Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0006415

Physical Location & Seq

Genomic Coordinates Reverse (-)

13241331 .. 13243478

Gene Structure 2148 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G102900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGGCAGCCAGTGTTGATGCAAGTTCAAGCTCATATGATCGCATGAAGGAAGTGAAGGAATTTGACGAGTCAAAGATGGGAGTCAAAGGCCTCTCCGATTCCGGCATCACTTCCATTCCTCAAATTTTTGTCCACGACCCTCAAACCCTATCCGACCTCAAACCCTCCTCCAAGCCAACTGCCGCTGTCAAACCCACCATCGACCTCTCCCACATCACCTCCCCTGCCCACCGCCCCAATATCGTTGACCAGGTCAAGGCCGCCGCCAAAACCTTTGGCTTCTTCCAGGTCACCAACCACGGGGTGCCCGTCTCGGTCCTAGACGAGACAGTGAACGCGGTCAAAGCTTTCCACGAGCAGCCCCATCAGGTGAAAGCCGAGTACTACAAGCGAGATGAAGGAAAGGGAGTTATGTATGCCAGCAACAACGACTTGTACCGTACAACCGCCGCCAGCTGGCACGACTCGCTGCAGATGTGGATGGGGCCGGAGCCGCCCAACGTGGAGGAGATCCCGGAGGTGTGCAGGGAAGAGTTGGCTGCATGGGATTTGCATGCAACCAAGGTGGCTGATGACGTTATGGAGCTGCTCTCGGAAGGGTTAGGGTTGGAGCGTGGGAGGTTTAAGGAGCTGACGTTTTCGGATTCAAGGGTGCTTGTGGGGCACTGCTATCCTTACTGTCCTCAGCCTGATCTGACGGTAGGGATTAAGGCACATACGGATCCCGGGATCGTGACGGTTCTGTTGCAAAACCATGTGCCGGGGTTGCAGGTTAGGCATGAGAATGAGTGGTTGGATGTGAAGCCTGTGCCTGGTGGTTTGATCATTAACGTTGGAGATTTTCTTCAGCATAAAGGTACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

288

Amino Acids

31.65

Weight (kDa)

5.5

Isoelectric Point (pI)

38.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006415)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g19280 FvH4_6g19280 FvH4_6g19281
malus_domestica	MD12G1028400.v1.1 MD12G1028500.v1.1 MD14G1028700.v1.1
prunus_persica	Prupe.7G102900_v2.0.a1 Prupe.7G103000_v2.0.a1
pyrus_communis	pycom12g02720 pycom12g02730 pycom14g02670 pycom14g02680
rosa_chinensis	RchiOBHm_Chr3g0474491
rosa_laevigata	RLG00000023917 RLG00000023927 RLG00000023928
rosa_multiflora	Rmu_sc0001353.1_g000045 Rmu_sc0039676.1_g000001
rosa_roxburghii	Rroxscaffold_6G00407120 Rroxscaffold_6G00407300
rosa_rugosa	Rorug03G0140600 Rorug03G0141100
rosa_samantha	Rh3AG192000 Rh3BG221500 Rh3CG216200 Rh3DG216900
rosa_wichuraiana	Rw3G017450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	760
AccB1I	GGYRCC	1 cut(s)	304
AccII	CGCG	1 cut(s)	338
AciI	CCGC	8 cut(s)	183, 232, 261, 264, 338, 447, 450, 494
AclI	AACGTT	1 cut(s)	831
AclWI	GGATC	4 cut(s)	505, 716, 729, 737
AcsI	RAATTY	2 cut(s)	59, 123
AcuI	CTGAAG	1 cut(s)	830
AdeI	CACNNNGTG	1 cut(s)	304
AfaI	GTAC	4 cut(s)	383, 437, 442, 859
AfiI	CCNNNNNNNGG	5 cut(s)	256, 300, 456, 760, 812
AgsI	TTSAA	2 cut(s)	27, 648
AjnI	CCWGG	3 cut(s)	249, 285, 811
AjuI	GAANNNNNNNTTGG	2 cut(s)	776, 808
AluBI	AGCT	5 cut(s)	30, 347, 456, 586, 631
AluI	AGCT	5 cut(s)	30, 347, 456, 586, 631
Alw26I	GTCTC	2 cut(s)	316, 320
AlwI	GGATC	4 cut(s)	505, 716, 729, 737
Ama87I	CYCGRG	1 cut(s)	725
AoxI	GGCC	3 cut(s)	88, 258, 485
ApeKI	GCWGC	5 cut(s)	5, 358, 469, 539, 586
ApoI	RAATTY	2 cut(s)	59, 123
AspS9I	GGNCC	2 cut(s)	316, 485
AsuC2I	CCSGG	4 cut(s)	515, 726, 727, 762
AsuHPI	GGTGA	3 cut(s)	208, 283, 382
AvaI	CYCGRG	1 cut(s)	725
AvaII	GGWCC	1 cut(s)	316
BaeGI	GKGCMC	2 cut(s)	309, 666
BamHI	GGATCC	1 cut(s)	721
BanI	GGYRCC	1 cut(s)	304
BauI	CACGAG	1 cut(s)	353
BbvCI	CCTCAGC	1 cut(s)	684
BbvI	GCAGC	5 cut(s)	17, 370, 456, 526, 573
BccI	CCATC	4 cut(s)	70, 206, 372, 475
BciT130I	CCWGG	3 cut(s)	251, 287, 813
BclI	TGATCA	1 cut(s)	822
BcnI	CCSGG	4 cut(s)	515, 726, 727, 762
BcoDI	GTCTC	2 cut(s)	316, 320
BfaI	CTAG	1 cut(s)	320
BfmI	CTRYAG	1 cut(s)	470
BfuAI	ACCTGC	1 cut(s)	760
BmcAI	AGTACT	1 cut(s)	383
Bme1390I	CCNGG	7 cut(s)	251, 287, 515, 726, 727, 762, 813
Bme18I	GGWCC	1 cut(s)	316
BmeT110I	CYCGRG	1 cut(s)	725
BmgT120I	GGNCC	2 cut(s)	316, 485
BmiI	GGNNCC	4 cut(s)	306, 486, 492, 723
BmrFI	CCNGG	7 cut(s)	251, 287, 515, 726, 727, 762, 813
BmsI	GCATC	2 cut(s)	7, 114
BplI	GAGNNNNNCTC	2 cut(s)	575, 607
Bpu10I	CCTNAGC	1 cut(s)	684
BpuMI	CCSGG	4 cut(s)	515, 726, 727, 762
BsaAI	YACGTR	1 cut(s)	861
BsaJI	CCNNGG	4 cut(s)	298, 561, 725, 761
BsaXI	ACNNNNNCTCC	4 cut(s)	203, 233, 620, 650
Bsc4I	CCNNNNNNNGG	5 cut(s)	256, 300, 456, 760, 812
Bse1I	ACTGG	1 cut(s)	9
BseBI	CCWGG	3 cut(s)	251, 287, 813
BseDI	CCNNGG	4 cut(s)	298, 561, 725, 761
BseGI	GGATG	2 cut(s)	486, 802
BseLI	CCNNNNNNNGG	5 cut(s)	256, 300, 456, 760, 812
BseMII	CTCAG	1 cut(s)	698
BseNI	ACTGG	1 cut(s)	9
BseRI	GAGGAG	2 cut(s)	157, 521
BseSI	GKGCMC	2 cut(s)	309, 666
BseXI	GCAGC	5 cut(s)	17, 370, 456, 526, 573
BsgI	GTGCAG	1 cut(s)	544
Bsh1236I	CGCG	1 cut(s)	338
BshFI	GGCC	3 cut(s)	90, 260, 487
BshNI	GGYRCC	1 cut(s)	304
BsiHKCI	CYCGRG	1 cut(s)	725
BsiSI	CCGG	5 cut(s)	102, 488, 515, 726, 761
BslI	CCNNNNNNNGG	5 cut(s)	256, 300, 456, 760, 812
BsmAI	GTCTC	2 cut(s)	316, 320
BsmBI	CGTCTC	1 cut(s)	316
BsnI	GGCC	3 cut(s)	90, 260, 487
BsoBI	CYCGRG	1 cut(s)	725
Bsp1286I	GDGCHC	2 cut(s)	309, 666
Bsp143I	GATC	6 cut(s)	37, 510, 691, 721, 729, 822
BspACI	CCGC	8 cut(s)	183, 232, 261, 264, 338, 447, 450, 494
BspANI	GGCC	3 cut(s)	90, 260, 487
BspCNI	CTCAG	1 cut(s)	697
BspFNI	CGCG	1 cut(s)	338
BspLI	GGNNCC	4 cut(s)	306, 486, 492, 723
BspMAI	CTGCAG	1 cut(s)	474
BspMI	ACCTGC	1 cut(s)	760
BspPI	GGATC	4 cut(s)	505, 716, 729, 737
BspT107I	GGYRCC	1 cut(s)	304
BsrI	ACTGG	1 cut(s)	9
BssECI	CCNNGG	4 cut(s)	298, 561, 725, 761
BssMI	GATC	6 cut(s)	37, 510, 691, 721, 729, 822
BssSI	CACGAG	1 cut(s)	353
BssT1I	CCWWGG	1 cut(s)	561
Bst2BI	CACGAG	1 cut(s)	353
Bst2UI	CCWGG	3 cut(s)	251, 287, 813
Bst4CI	ACNGT	5 cut(s)	331, 440, 680, 700, 739
Bst6I	CTCTTC	1 cut(s)	525
BstBAI	YACGTR	1 cut(s)	861
BstC8I	GCNNGC	4 cut(s)	421, 454, 458, 555
BstDEI	CTNAG	1 cut(s)	684
BstDSI	CCRYGG	1 cut(s)	298
BstEII	GGTNACC	1 cut(s)	289
BstF5I	GGATG	2 cut(s)	486, 802
BstFNI	CGCG	1 cut(s)	338
BstKTI	GATC	6 cut(s)	40, 513, 694, 724, 732, 825
BstMAI	GTCTC	2 cut(s)	316, 320
BstMBI	GATC	6 cut(s)	37, 510, 691, 721, 729, 822
BstMWI	GCNNNNNNNGC	6 cut(s)	344, 466, 493, 661, 766, 775
BstNI	CCWGG	3 cut(s)	251, 287, 813
BstNSI	RCATGY	1 cut(s)	557
BstPI	GGTNACC	1 cut(s)	289
BstSCI	CCNGG	7 cut(s)	249, 285, 513, 724, 725, 760, 811
BstSFI	CTRYAG	1 cut(s)	470
BstSLI	GKGCMC	2 cut(s)	309, 666
BstUI	CGCG	1 cut(s)	338
BstV1I	GCAGC	5 cut(s)	17, 370, 456, 526, 573
BstX2I	RGATCY	2 cut(s)	510, 721
BstYI	RGATCY	2 cut(s)	510, 721
BsuRI	GGCC	3 cut(s)	90, 260, 487
BtgI	CCRYGG	1 cut(s)	298
BtsCI	GGATG	2 cut(s)	486, 802
BtsI	GCAGTG	1 cut(s)	664
BtsIMutI	CAGTG	3 cut(s)	16, 336, 664
BveI	ACCTGC	1 cut(s)	760
Cac8I	GCNNGC	4 cut(s)	421, 454, 458, 555
Cfr13I	GGNCC	2 cut(s)	316, 485
Cfr9I	CCCGGG	1 cut(s)	725
CsiI	ACCWGGT	1 cut(s)	249
Csp6I	GTAC	4 cut(s)	382, 436, 441, 858
CspCI	CAANNNNNGTGG	2 cut(s)	546, 581
CviAII	CATG	5 cut(s)	43, 543, 554, 755, 779
CviQI	GTAC	4 cut(s)	382, 436, 441, 858
DdeI	CTNAG	1 cut(s)	684
DpnI	GATC	6 cut(s)	39, 512, 693, 723, 731, 824
DpnII	GATC	6 cut(s)	37, 510, 691, 721, 729, 822
DraIII	CACNNNGTG	1 cut(s)	304
Eam1104I	CTCTTC	1 cut(s)	525
EarI	CTCTTC	1 cut(s)	525
Eco130I	CCWWGG	1 cut(s)	561
Eco147I	AGGCCT	1 cut(s)	90
Eco47I	GGWCC	1 cut(s)	316
Eco57I	CTGAAG	1 cut(s)	830
Eco88I	CYCGRG	1 cut(s)	725
Eco91I	GGTNACC	1 cut(s)	289
EcoO65I	GGTNACC	1 cut(s)	289
EcoRII	CCWGG	3 cut(s)	249, 285, 811
EcoT14I	CCWWGG	1 cut(s)	561
ErhI	CCWWGG	1 cut(s)	561
Esp3I	CGTCTC	1 cut(s)	316
FaeI	CATG	5 cut(s)	46, 546, 557, 758, 782
FatI	CATG	5 cut(s)	42, 542, 553, 754, 778
FauNDI	CATATG	1 cut(s)	34
FbaI	TGATCA	1 cut(s)	822
FokI	GGATG	2 cut(s)	493, 809
FspBI	CTAG	1 cut(s)	320
HaeIII	GGCC	3 cut(s)	90, 260, 487
HapII	CCGG	5 cut(s)	102, 488, 515, 726, 761
Hin1II	CATG	5 cut(s)	46, 546, 557, 758, 782
HincII	GTYRAC	1 cut(s)	247
HindII	GTYRAC	1 cut(s)	247
HindIII	AAGCTT	1 cut(s)	345
HinfI	GANTC	5 cut(s)	68, 81, 98, 464, 644
HpaII	CCGG	5 cut(s)	102, 488, 515, 726, 761
HphI	GGTGA	3 cut(s)	208, 283, 382
Hpy166II	GTNNAC	3 cut(s)	133, 247, 334
Hpy188I	TCNGA	5 cut(s)	97, 154, 595, 643, 696
Hpy188III	TCNNGA	1 cut(s)	733
Hpy8I	GTNNAC	3 cut(s)	133, 247, 334
HpyAV	CCTTC	4 cut(s)	40, 49, 392, 590
HpyCH4III	ACNGT	5 cut(s)	331, 440, 680, 700, 739
HpyCH4IV	ACGT	5 cut(s)	501, 576, 635, 831, 860
HpyCH4V	TGCA	8 cut(s)	20, 472, 525, 542, 553, 557, 748, 769
HpyF10VI	GCNNNNNNNGC	6 cut(s)	344, 466, 493, 661, 766, 775
HpyF3I	CTNAG	1 cut(s)	684
HpySE526I	ACGT	5 cut(s)	501, 576, 635, 831, 860
Hsp92II	CATG	5 cut(s)	46, 546, 557, 758, 782
Ksp22I	TGATCA	1 cut(s)	822
Kzo9I	GATC	6 cut(s)	37, 510, 691, 721, 729, 822
LmnI	GCTCC	4 cut(s)	490, 583, 610, 628
Lsp1109I	GCAGC	5 cut(s)	17, 370, 456, 526, 573
LweI	GCATC	2 cut(s)	7, 114
MabI	ACCWGGT	1 cut(s)	249
MaeI	CTAG	1 cut(s)	320
MaeII	ACGT	5 cut(s)	501, 576, 635, 831, 860
MaeIII	GTNAC	2 cut(s)	289, 733
MalI	GATC	6 cut(s)	39, 512, 693, 723, 731, 824
MboI	GATC	6 cut(s)	37, 510, 691, 721, 729, 822
MboII	GAAGA	3 cut(s)	274, 542, 836
MflI	RGATCY	2 cut(s)	510, 721
MhlI	GDGCHC	2 cut(s)	309, 666
MluCI	AATT	2 cut(s)	59, 123
MlyI	GAGTC	3 cut(s)	77, 90, 458
MmeI	TCCRAC	4 cut(s)	177, 588, 774, 814
MseI	TTAA	3 cut(s)	624, 708, 828
MslI	CAYNNNNRTG	1 cut(s)	783
MspA1I	CMGCKG	2 cut(s)	185, 456
MspI	CCGG	5 cut(s)	102, 488, 515, 726, 761
MspR9I	CCNGG	7 cut(s)	251, 287, 515, 726, 727, 762, 813
MvaI	CCWGG	3 cut(s)	251, 287, 813
MvnI	CGCG	1 cut(s)	338
MwoI	GCNNNNNNNGC	6 cut(s)	344, 466, 493, 661, 766, 775
NciI	CCSGG	4 cut(s)	515, 726, 727, 762
NdeI	CATATG	1 cut(s)	34
NdeII	GATC	6 cut(s)	37, 510, 691, 721, 729, 822
NlaIII	CATG	5 cut(s)	46, 546, 557, 758, 782
NlaIV	GGNNCC	4 cut(s)	306, 486, 492, 723
NmeAIII	GCCGAG	1 cut(s)	403
NmuCI	GTSAC	2 cut(s)	289, 733
NspI	RCATGY	1 cut(s)	557
PaeI	GCATGC	1 cut(s)	557
PceI	AGGCCT	1 cut(s)	90
PcsI	WCGNNNNNNNCGW	1 cut(s)	306
PfeI	GAWTC	2 cut(s)	98, 644
PflFI	GACNNNGTC	1 cut(s)	251
PfoI	TCCNGGA	1 cut(s)	513
PleI	GAGTC	3 cut(s)	76, 89, 458
PpsI	GAGTC	3 cut(s)	76, 89, 458
Ppu21I	YACGTR	1 cut(s)	861
Psp1406I	AACGTT	1 cut(s)	831
Psp6I	CCWGG	3 cut(s)	249, 285, 811
PspEI	GGTNACC	1 cut(s)	289
PspGI	CCWGG	3 cut(s)	249, 285, 811
PspN4I	GGNNCC	4 cut(s)	306, 486, 492, 723
PspPI	GGNCC	2 cut(s)	316, 485
PstI	CTGCAG	1 cut(s)	474
PsuI	RGATCY	2 cut(s)	510, 721
PsyI	GACNNNGTC	1 cut(s)	251
PvuII	CAGCTG	1 cut(s)	456
RsaI	GTAC	4 cut(s)	383, 437, 442, 859
RsaNI	GTAC	4 cut(s)	382, 436, 441, 858
RseI	CAYNNNNRTG	1 cut(s)	783
SaqAI	TTAA	3 cut(s)	624, 708, 828
Sau3AI	GATC	6 cut(s)	37, 510, 691, 721, 729, 822
Sau96I	GGNCC	2 cut(s)	316, 485
ScaI	AGTACT	1 cut(s)	383
SchI	GAGTC	3 cut(s)	77, 90, 458
ScrFI	CCNGG	7 cut(s)	251, 287, 515, 726, 727, 762, 813
SduI	GDGCHC	2 cut(s)	309, 666
SexAI	ACCWGGT	1 cut(s)	249
SfaNI	GCATC	2 cut(s)	7, 114
SfcI	CTRYAG	1 cut(s)	470
SinI	GGWCC	1 cut(s)	316
SmaI	CCCGGG	1 cut(s)	727
SmiMI	CAYNNNNRTG	1 cut(s)	783
SphI	GCATGC	1 cut(s)	557
Sse9I	AATT	2 cut(s)	59, 123
SseBI	AGGCCT	1 cut(s)	90
SsiI	CCGC	8 cut(s)	183, 232, 261, 264, 338, 447, 450, 494
SspMI	CTAG	1 cut(s)	320
StuI	AGGCCT	1 cut(s)	90
StyD4I	CCNGG	7 cut(s)	249, 285, 513, 724, 725, 760, 811
StyI	CCWWGG	1 cut(s)	561
TaaI	ACNGT	5 cut(s)	331, 440, 680, 700, 739
TaiI	ACGT	5 cut(s)	504, 579, 638, 834, 863
TaqI	TCGA	1 cut(s)	201
TaqII	GACCGA	1 cut(s)	304
TasI	AATT	2 cut(s)	59, 123
TatI	WGTACW	1 cut(s)	381
TauI	GCSGC	5 cut(s)	185, 263, 266, 452, 496
TfiI	GAWTC	2 cut(s)	98, 644
Tru1I	TTAA	3 cut(s)	624, 708, 828
Tru9I	TTAA	3 cut(s)	624, 708, 828
TscAI	CASTG	3 cut(s)	16, 336, 671
TseFI	GTSAC	2 cut(s)	289, 733
TseI	GCWGC	5 cut(s)	5, 358, 469, 539, 586
Tsp45I	GTSAC	2 cut(s)	289, 733
TspDTI	ATGAA	2 cut(s)	59, 411
TspGWI	ACGGA	1 cut(s)	734
TspMI	CCCGGG	1 cut(s)	725
TspRI	CASTG	3 cut(s)	16, 336, 671
Tth111I	GACNNNGTC	1 cut(s)	251
VpaK11BI	GGWCC	1 cut(s)	316
XapI	RAATTY	2 cut(s)	59, 123
XceI	RCATGY	1 cut(s)	557
XmaI	CCCGGG	1 cut(s)	725
XspI	CTAG	1 cut(s)	320
ZrmI	AGTACT	1 cut(s)	383

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.