Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001353.1

Orthogroup ID

OG0006415

Physical Location & Seq

Genomic Coordinates Forward (+)

180057 .. 180881

Gene Structure 825 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001353.1_g000045.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

atggcagacatggatgaaaattcgggatacaaccgaatgacggaagtgaaagagttcgacaaatcaaagatcggagttaaaggcctctccgactccggcatcacttccatcccccaattctttgtgcacgacccccaaaccctctccgacctcaaaccctcgtccaaacgcaccgtccccgccacgctccccaccatcgacctttcttacatcaactcggctaatcaccgccccgaaatcgttgaccagatcaaagacgccggcaggacatggggattcttccaagtgatcaaccacggcatacccgtctgggtggtggatcagacggtgaacgcagtcaaagcatttcatgagcagccccacgaggtgaaggccaggttctacaagcgagaagaggggaagggcttcatgtacgccagcaacaatgacttgtaccgcacaaaggcggccagctggcacgactcgtttactgtgtggacagggccggaactgccggaggtggaggagcttccggaggtatgtagaaatgaggtggttgcatgggatttgcatgcaaccaaggtggctgagagtgtgatggagttgctttcagaaggcttagggttagaagctggcaagttcaaggagcttacgttttcggagaagagggcgcttgtggggcactgctatccctactgtcctcagcccgatcggacagtggggattatgtcgcatactgatcctgggatagtgacagttctgttgcaaaaccatgtgcctgggttgcaatgcaagttaggcatgaggatgagtgggtggacgtcaaggctgttcctggaggtctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

274

Amino Acids

30.84

Weight (kDa)

5.82

Isoelectric Point (pI)

33.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006415)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g19280 FvH4_6g19280 FvH4_6g19281
malus_domestica	MD12G1028400.v1.1 MD12G1028500.v1.1 MD14G1028700.v1.1
prunus_persica	Prupe.7G102900_v2.0.a1 Prupe.7G103000_v2.0.a1
pyrus_communis	pycom12g02720 pycom12g02730 pycom14g02670 pycom14g02680
rosa_chinensis	RchiOBHm_Chr3g0474491
rosa_laevigata	RLG00000023917 RLG00000023927 RLG00000023928
rosa_multiflora	Rmu_sc0001353.1_g000045 Rmu_sc0039676.1_g000001
rosa_roxburghii	Rroxscaffold_6G00407120 Rroxscaffold_6G00407300
rosa_rugosa	Rorug03G0140600 Rorug03G0141100
rosa_samantha	Rh3AG192000 Rh3BG221500 Rh3CG216200 Rh3DG216900
rosa_wichuraiana	Rw3G017450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	803
AccIII	TCCGGA	1 cut(s)	511
AciI	CCGC	4 cut(s)	180, 229, 436, 446
AclWI	GGATC	2 cut(s)	327, 713
AcoI	YGGCCR	1 cut(s)	447
AcsI	RAATTY	1 cut(s)	19
AcyI	GRCGYC	2 cut(s)	258, 800
AdeI	CACNNNGTG	1 cut(s)	367
AfaI	GTAC	2 cut(s)	413, 434
AfiI	CCNNNNNNNGG	2 cut(s)	40, 442
AgsI	TTSAA	1 cut(s)	622
AjnI	CCWGG	4 cut(s)	374, 721, 757, 813
AluBI	AGCT	4 cut(s)	453, 508, 611, 628
AluI	AGCT	4 cut(s)	453, 508, 611, 628
Alw21I	GWGCWC	1 cut(s)	129
Alw44I	GTGCAC	1 cut(s)	125
AlwI	GGATC	2 cut(s)	327, 713
Aor13HI	TCCGGA	1 cut(s)	511
AoxI	GGCC	4 cut(s)	82, 372, 447, 482
ApaLI	GTGCAC	1 cut(s)	125
ApeKI	GCWGC	1 cut(s)	355
ApoI	RAATTY	1 cut(s)	19
ArsI	GACNNNNNNTTYG	2 cut(s)	159, 191
Asp700I	GAANNNNTTC	2 cut(s)	53, 404
AspLEI	GCGC	1 cut(s)	652
AspS9I	GGNCC	1 cut(s)	482
AsuHPI	GGTGA	3 cut(s)	218, 340, 379
BaeGI	GKGCMC	2 cut(s)	129, 663
BauI	CACGAG	1 cut(s)	362
Bbv12I	GWGCWC	1 cut(s)	129
BbvCI	CCTCAGC	1 cut(s)	681
BbvI	GCAGC	1 cut(s)	367
BccI	CCATC	3 cut(s)	116, 203, 571
BceAI	ACGGC	1 cut(s)	313
BciT130I	CCWGG	4 cut(s)	376, 723, 759, 815
BciVI	GTATCC	1 cut(s)	20
BclI	TGATCA	1 cut(s)	288
BfoI	RGCGCY	1 cut(s)	653
BfuI	GTATCC	1 cut(s)	20
BisI	GCNGC	2 cut(s)	356, 447
BlsI	GCNGC	2 cut(s)	357, 448
Bme1390I	CCNGG	4 cut(s)	376, 723, 759, 815
BmgT120I	GGNCC	1 cut(s)	482
BmrFI	CCNGG	4 cut(s)	376, 723, 759, 815
BmsI	GCATC	1 cut(s)	108
Bpu10I	CCTNAGC	2 cut(s)	598, 681
BsaHI	GRCGYC	2 cut(s)	258, 800
BsaJI	CCNNGG	4 cut(s)	295, 558, 722, 758
BsaWI	WCCGGW	1 cut(s)	511
BsaXI	ACNNNNNCTCC	2 cut(s)	617, 647
Bsc4I	CCNNNNNNNGG	2 cut(s)	40, 442
Bse118I	RCCGGY	1 cut(s)	260
Bse3DI	GCAATG	1 cut(s)	773
BseAI	TCCGGA	1 cut(s)	511
BseBI	CCWGG	4 cut(s)	376, 723, 759, 815
BseDI	CCNNGG	4 cut(s)	295, 558, 722, 758
BseGI	GGATG	3 cut(s)	19, 108, 792
BseLI	CCNNNNNNNGG	2 cut(s)	40, 442
BseMI	GCAATG	1 cut(s)	773
BseMII	CTCAG	2 cut(s)	558, 695
BseRI	GAGGAG	1 cut(s)	518
BseSI	GKGCMC	2 cut(s)	129, 663
BseXI	GCAGC	1 cut(s)	367
Bsh1285I	CGRYCG	1 cut(s)	691
BshFI	GGCC	4 cut(s)	84, 374, 449, 484
BsiEI	CGRYCG	1 cut(s)	691
BsiHKAI	GWGCWC	1 cut(s)	129
BsiSI	CCGG	5 cut(s)	96, 261, 485, 494, 512
BslFI	GGGAC	1 cut(s)	161
BslI	CCNNNNNNNGG	2 cut(s)	40, 442
BsmFI	GGGAC	1 cut(s)	161
BsnI	GGCC	4 cut(s)	84, 374, 449, 484
Bsp1286I	GDGCHC	2 cut(s)	129, 663
Bsp13I	TCCGGA	1 cut(s)	511
Bsp143I	GATC	6 cut(s)	69, 249, 288, 319, 688, 718
BspACI	CCGC	4 cut(s)	180, 229, 436, 446
BspANI	GGCC	4 cut(s)	84, 374, 449, 484
BspCNI	CTCAG	2 cut(s)	559, 694
BspEI	TCCGGA	1 cut(s)	511
BspHI	TCATGA	1 cut(s)	349
BspPI	GGATC	2 cut(s)	327, 713
BsrDI	GCAATG	1 cut(s)	773
BsrFI	RCCGGY	1 cut(s)	260
BssAI	RCCGGY	1 cut(s)	260
BssECI	CCNNGG	4 cut(s)	295, 558, 722, 758
BssMI	GATC	6 cut(s)	69, 249, 288, 319, 688, 718
BssNI	GRCGYC	2 cut(s)	258, 800
BssSI	CACGAG	1 cut(s)	362
BssT1I	CCWWGG	1 cut(s)	558
Bst2BI	CACGAG	1 cut(s)	362
Bst2UI	CCWGG	4 cut(s)	376, 723, 759, 815
Bst4CI	ACNGT	6 cut(s)	175, 328, 472, 677, 697, 736
Bst6I	CTCTTC	2 cut(s)	387, 638
BstACI	GRCGYC	2 cut(s)	258, 800
BstC8I	GCNNGC	6 cut(s)	262, 418, 451, 455, 552, 613
BstDEI	CTNAG	3 cut(s)	567, 598, 681
BstDSI	CCRYGG	1 cut(s)	295
BstF5I	GGATG	3 cut(s)	19, 108, 792
BstH2I	RGCGCY	1 cut(s)	653
BstHHI	GCGC	1 cut(s)	652
BstKTI	GATC	6 cut(s)	72, 252, 291, 322, 691, 721
BstMBI	GATC	6 cut(s)	69, 249, 288, 319, 688, 718
BstMCI	CGRYCG	1 cut(s)	691
BstMWI	GCNNNNNNNGC	5 cut(s)	341, 490, 658, 763, 777
BstNI	CCWGG	4 cut(s)	376, 723, 759, 815
BstNSI	RCATGY	1 cut(s)	554
BstSCI	CCNGG	4 cut(s)	374, 721, 757, 813
BstSLI	GKGCMC	2 cut(s)	129, 663
BstV1I	GCAGC	1 cut(s)	367
BstXI	CCANNNNNNTGG	1 cut(s)	758
BsuI	GTATCC	1 cut(s)	20
BsuRI	GGCC	4 cut(s)	84, 374, 449, 484
BtgI	CCRYGG	1 cut(s)	295
BtsCI	GGATG	3 cut(s)	19, 108, 792
BtsI	GCAGTG	1 cut(s)	661
BtsIMutI	CAGTG	2 cut(s)	661, 702
Cac8I	GCNNGC	6 cut(s)	262, 418, 451, 455, 552, 613
CciI	TCATGA	1 cut(s)	349
CfoI	GCGC	1 cut(s)	652
Cfr10I	RCCGGY	1 cut(s)	260
Cfr13I	GGNCC	1 cut(s)	482
CseI	GACGC	1 cut(s)	266
Csp6I	GTAC	2 cut(s)	412, 433
CspCI	CAANNNNNGTGG	2 cut(s)	543, 578
CviAII	CATG	8 cut(s)	10, 270, 350, 409, 540, 551, 752, 781
CviQI	GTAC	2 cut(s)	412, 433
DdeI	CTNAG	3 cut(s)	567, 598, 681
DpnI	GATC	6 cut(s)	71, 251, 290, 321, 690, 720
DpnII	GATC	6 cut(s)	69, 249, 288, 319, 688, 718
DraIII	CACNNNGTG	1 cut(s)	367
EaeI	YGGCCR	1 cut(s)	447
Eam1104I	CTCTTC	2 cut(s)	387, 638
EarI	CTCTTC	2 cut(s)	387, 638
Eco130I	CCWWGG	1 cut(s)	558
Eco147I	AGGCCT	1 cut(s)	84
EcoRII	CCWGG	4 cut(s)	374, 721, 757, 813
EcoT14I	CCWWGG	1 cut(s)	558
ErhI	CCWWGG	1 cut(s)	558
FaeI	CATG	8 cut(s)	13, 273, 353, 412, 543, 554, 755, 784
FaqI	GGGAC	1 cut(s)	161
FatI	CATG	8 cut(s)	9, 269, 349, 408, 539, 550, 751, 780
FauI	CCCGC	1 cut(s)	187
FbaI	TGATCA	1 cut(s)	288
Fnu4HI	GCNGC	2 cut(s)	356, 447
FokI	GGATG	3 cut(s)	26, 95, 799
Fsp4HI	GCNGC	2 cut(s)	356, 447
GlaI	GCGC	1 cut(s)	651
GluI	GCNGC	2 cut(s)	356, 447
HaeII	RGCGCY	1 cut(s)	653
HaeIII	GGCC	4 cut(s)	84, 374, 449, 484
HapII	CCGG	5 cut(s)	96, 261, 485, 494, 512
HgaI	GACGC	1 cut(s)	266
HhaI	GCGC	1 cut(s)	652
Hin1I	GRCGYC	2 cut(s)	258, 800
Hin1II	CATG	8 cut(s)	13, 273, 353, 412, 543, 554, 755, 784
Hin6I	GCGC	1 cut(s)	650
HinP1I	GCGC	1 cut(s)	650
HincII	GTYRAC	1 cut(s)	244
HindII	GTYRAC	1 cut(s)	244
HinfI	GANTC	3 cut(s)	92, 276, 461
HpaII	CCGG	5 cut(s)	96, 261, 485, 494, 512
HphI	GGTGA	3 cut(s)	218, 340, 379
Hpy166II	GTNNAC	6 cut(s)	127, 244, 331, 468, 477, 798
Hpy188I	TCNGA	8 cut(s)	74, 91, 148, 324, 592, 640, 693, 824
Hpy188III	TCNNGA	3 cut(s)	24, 350, 512
Hpy8I	GTNNAC	6 cut(s)	127, 244, 331, 468, 477, 798
HpyAV	CCTTC	3 cut(s)	364, 394, 587
HpyCH4III	ACNGT	6 cut(s)	175, 328, 472, 677, 697, 736
HpyCH4IV	ACGT	2 cut(s)	632, 800
HpyCH4V	TGCA	7 cut(s)	127, 539, 550, 554, 745, 766, 771
HpyF10VI	GCNNNNNNNGC	5 cut(s)	341, 490, 658, 763, 777
HpyF3I	CTNAG	3 cut(s)	567, 598, 681
HpySE526I	ACGT	2 cut(s)	632, 800
Hsp92I	GRCGYC	2 cut(s)	258, 800
Hsp92II	CATG	8 cut(s)	13, 273, 353, 412, 543, 554, 755, 784
HspAI	GCGC	1 cut(s)	650
Kpn2I	TCCGGA	1 cut(s)	511
KroI	GCCGGC	1 cut(s)	260
KroNI	GCCGGC	1 cut(s)	262
Ksp22I	TGATCA	1 cut(s)	288
Kzo9I	GATC	6 cut(s)	69, 249, 288, 319, 688, 718
LmnI	GCTCC	3 cut(s)	192, 505, 625
Lsp1109I	GCAGC	1 cut(s)	367
LweI	GCATC	1 cut(s)	108
MaeII	ACGT	2 cut(s)	632, 800
MaeIII	GTNAC	1 cut(s)	730
MalI	GATC	6 cut(s)	71, 251, 290, 321, 690, 720
MboI	GATC	6 cut(s)	69, 249, 288, 319, 688, 718
MboII	GAAGA	3 cut(s)	271, 404, 655
MhlI	GDGCHC	2 cut(s)	129, 663
MluCI	AATT	2 cut(s)	19, 116
MlyI	GAGTC	2 cut(s)	86, 455
MmeI	TCCRAC	2 cut(s)	114, 171
MroI	TCCGGA	1 cut(s)	511
MroNI	GCCGGC	1 cut(s)	260
MroXI	GAANNNNTTC	2 cut(s)	53, 404
MseI	TTAA	1 cut(s)	78
MslI	CAYNNNNRTG	1 cut(s)	785
MspA1I	CMGCKG	1 cut(s)	453
MspI	CCGG	5 cut(s)	96, 261, 485, 494, 512
MspR9I	CCNGG	4 cut(s)	376, 723, 759, 815
MvaI	CCWGG	4 cut(s)	376, 723, 759, 815
MwoI	GCNNNNNNNGC	5 cut(s)	341, 490, 658, 763, 777
NaeI	GCCGGC	1 cut(s)	262
NdeII	GATC	6 cut(s)	69, 249, 288, 319, 688, 718
NgoMIV	GCCGGC	1 cut(s)	260
NlaIII	CATG	8 cut(s)	13, 273, 353, 412, 543, 554, 755, 784
NmeAIII	GCCGAG	1 cut(s)	197
NmuCI	GTSAC	1 cut(s)	730
NspI	RCATGY	1 cut(s)	554
PaeI	GCATGC	1 cut(s)	554
PagI	TCATGA	1 cut(s)	349
PceI	AGGCCT	1 cut(s)	84
PcsI	WCGNNNNNNNCGW	1 cut(s)	303
PdiI	GCCGGC	1 cut(s)	262
PdmI	GAANNNNTTC	2 cut(s)	53, 404
PfeI	GAWTC	1 cut(s)	276
PfoI	TCCNGGA	1 cut(s)	813
PkrI	GCNGC	2 cut(s)	357, 448
Ple19I	CGATCG	1 cut(s)	691
PleI	GAGTC	2 cut(s)	86, 455
PpsI	GAGTC	2 cut(s)	86, 455
Psp6I	CCWGG	4 cut(s)	374, 721, 757, 813
PspGI	CCWGG	4 cut(s)	374, 721, 757, 813
PspPI	GGNCC	1 cut(s)	482
PvuI	CGATCG	1 cut(s)	691
PvuII	CAGCTG	1 cut(s)	453
RsaI	GTAC	2 cut(s)	413, 434
RsaNI	GTAC	2 cut(s)	412, 433
RseI	CAYNNNNRTG	1 cut(s)	785
SaqAI	TTAA	1 cut(s)	78
SatI	GCNGC	2 cut(s)	356, 447
Sau3AI	GATC	6 cut(s)	69, 249, 288, 319, 688, 718
Sau96I	GGNCC	1 cut(s)	482
SchI	GAGTC	2 cut(s)	86, 455
ScrFI	CCNGG	4 cut(s)	376, 723, 759, 815
SduI	GDGCHC	2 cut(s)	129, 663
SfaNI	GCATC	1 cut(s)	108
SmiMI	CAYNNNNRTG	1 cut(s)	785
SphI	GCATGC	1 cut(s)	554
Sse9I	AATT	2 cut(s)	19, 116
SseBI	AGGCCT	1 cut(s)	84
SsiI	CCGC	4 cut(s)	180, 229, 436, 446
StuI	AGGCCT	1 cut(s)	84
StyD4I	CCNGG	4 cut(s)	374, 721, 757, 813
StyI	CCWWGG	1 cut(s)	558
TaaI	ACNGT	6 cut(s)	175, 328, 472, 677, 697, 736
TaiI	ACGT	2 cut(s)	635, 803
TaqI	TCGA	2 cut(s)	57, 198
TasI	AATT	2 cut(s)	19, 116
TauI	GCSGC	1 cut(s)	449
TfiI	GAWTC	1 cut(s)	276
Tru1I	TTAA	1 cut(s)	78
Tru9I	TTAA	1 cut(s)	78
TscAI	CASTG	2 cut(s)	668, 702
TseFI	GTSAC	1 cut(s)	730
TseI	GCWGC	1 cut(s)	355
Tsp45I	GTSAC	1 cut(s)	730
TspDTI	ATGAA	3 cut(s)	30, 338, 397
TspGWI	ACGGA	1 cut(s)	56
TspRI	CASTG	2 cut(s)	668, 702
VneI	GTGCAC	1 cut(s)	125
XapI	RAATTY	1 cut(s)	19
XceI	RCATGY	1 cut(s)	554
XmnI	GAANNNNTTC	2 cut(s)	53, 404
ZraI	GACGTC	1 cut(s)	801

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.