Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0006415

Physical Location & Seq

Genomic Coordinates Forward (+)

18884428 .. 18886459

Gene Structure 2032 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G017450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGGCAGCTATTGATGCAACATCAGGATATGACCGAGTGAAGGAAGTGAAAGAATTCGACGAGTCTAAGATCGGAGTTAAAGGCCTCTCCGATTCCGGCATCACTTCCATCCCTCAATTCTTCGTCCACGACCCCGAAACCCTCTCCGACGTCAAACCCTCGTCCAAATACACTGCCGCCACCCTCCCCACTATCGATCTTTCAGACATCAACTCGGTTACTCACCGTGCCGAAATTGTTGAGCAGATCAAACTCGCCGCGAAAACATGGGGTTTCTTCCAAGTAATCAACCACGGCGTGCCCGTTTCGGTACTCGATGAGACGTTGAAGGCTGTAAAAGCGTTTCATGACCAGCCCCACGAGGTGAAGGCGAAGTACTACAAGCGAGAAGAGGGAAAGGGCGTCATGTATGCCAGCAATAACGACTTGTACCGTACAAAGGCGGCGAGCTGGCATGACTCGTTGCAGGTCTGGATGGGCCCACAGCGTTCCGAGGCGGAGGAGATCCCGGAGATGTGCAGGAATGAGGTGGTTGCGTGGGATTTTCATGCAACCAAGGTGGGTGAAACTGTGATGGAGTTGCTTTCAGAAGGGTTAGGGTTGGAAGCCGGGAAGTTCAAGGAGCTTACGTTTTCGGATTCGAGGGTCATTGTTGGGCACTGCTATCCCTATTGTCCTCAACCCGATCTCACGGTGGGGATTACATCGCATACTGATCCTGGGATAGTGACAGTTCTTTTGCAGAACCATGTACCTGGGTTGCAAGTTAGGCATCAAAATGAGTGGGTGGATGTCAAGCCTGTGCCTGGAGGTTTGGTTATCAACATTGGAGATCTTCTTCAGATAATATCTAATGGGGAGTATAAAAGTGTGCAACATCGTGTGTTGGCAAACTCCTGGAAGGAAGCTCGAATTTCAATTGTGATATTTTACAACCTAGCCAAATGGAGGGAAGATGGATATTGTGGACCTCTCCCAGAACTTTTGTCACCGGAGAAGCCACCAATCTATCGAAACTTCACGGAGAAAGAATTTGTGGAAAATTTCTATAGCAAAGGAATAGATAGCAAGTCTCTGATCGAAAAAATCACAATACATAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

367

Amino Acids

41.18

Weight (kDa)

5.66

Isoelectric Point (pI)

33.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	62 - 160	5.7e-21	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	217 - 312	3.4e-30	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006415)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g19280 FvH4_6g19280 FvH4_6g19281
malus_domestica	MD12G1028400.v1.1 MD12G1028500.v1.1 MD14G1028700.v1.1
prunus_persica	Prupe.7G102900_v2.0.a1 Prupe.7G103000_v2.0.a1
pyrus_communis	pycom12g02720 pycom12g02730 pycom14g02670 pycom14g02680
rosa_chinensis	RchiOBHm_Chr3g0474491
rosa_laevigata	RLG00000023917 RLG00000023927 RLG00000023928
rosa_multiflora	Rmu_sc0001353.1_g000045 Rmu_sc0039676.1_g000001
rosa_roxburghii	Rroxscaffold_6G00407120 Rroxscaffold_6G00407300
rosa_rugosa	Rorug03G0140600 Rorug03G0141100
rosa_samantha	Rh3AG192000 Rh3BG221500 Rh3CG216200 Rh3DG216900
rosa_wichuraiana	Rw3G017450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	153
Acc36I	ACCTGC	1 cut(s)	457
AccII	CGCG	1 cut(s)	260
AciI	CCGC	4 cut(s)	177, 258, 443, 497
AclWI	GGATC	2 cut(s)	499, 710
AcsI	RAATTY	4 cut(s)	53, 912, 1031, 1042
AcuI	CTGAAG	1 cut(s)	824
AcyI	GRCGYC	2 cut(s)	150, 402
AdeI	CACNNNGTG	2 cut(s)	298, 364
AfaI	GTAC	5 cut(s)	312, 377, 431, 436, 753
AfiI	CCNNNNNNNGG	4 cut(s)	40, 439, 806, 948
AgsI	TTSAA	3 cut(s)	328, 619, 918
AjnI	CCWGG	4 cut(s)	718, 754, 805, 896
AluBI	AGCT	4 cut(s)	8, 450, 625, 908
AluI	AGCT	4 cut(s)	8, 450, 625, 908
Alw26I	GTCTC	2 cut(s)	314, 1077
AlwI	GGATC	2 cut(s)	499, 710
AoxI	GGCC	2 cut(s)	82, 478
ApaI	GGGCCC	1 cut(s)	482
ApeKI	GCWGC	1 cut(s)	5
ApoI	RAATTY	4 cut(s)	53, 912, 1031, 1042
ArsI	GACNNNNNNTTYG	2 cut(s)	721, 753
Asp700I	GAANNNNTTC	1 cut(s)	53
AspS9I	GGNCC	3 cut(s)	478, 479, 968
AsuC2I	CCSGG	2 cut(s)	509, 610
AsuHPI	GGTGA	4 cut(s)	215, 376, 575, 981
AvaII	GGWCC	1 cut(s)	968
BaeGI	GKGCMC	3 cut(s)	303, 482, 660
BanII	GRGCYC	1 cut(s)	482
BarI	GAAGNNNNNNTAC	2 cut(s)	359, 391
BauI	CACGAG	1 cut(s)	359
BbvI	GCAGC	1 cut(s)	17
BccI	CCATC	4 cut(s)	116, 469, 568, 950
BceAI	ACGGC	1 cut(s)	310
BciT130I	CCWGG	4 cut(s)	720, 756, 807, 898
BcnI	CCSGG	2 cut(s)	509, 610
BcoDI	GTCTC	2 cut(s)	314, 1077
BfaI	CTAG	1 cut(s)	938
BfmI	CTRYAG	1 cut(s)	1048
BfuAI	ACCTGC	1 cut(s)	457
BglII	AGATCT	1 cut(s)	832
BisI	GCNGC	4 cut(s)	6, 177, 258, 444
BlsI	GCNGC	4 cut(s)	7, 178, 259, 445
BmcAI	AGTACT	1 cut(s)	377
Bme1390I	CCNGG	6 cut(s)	509, 610, 720, 756, 807, 898
Bme18I	GGWCC	1 cut(s)	968
BmgT120I	GGNCC	3 cut(s)	478, 479, 968
BmiI	GGNNCC	1 cut(s)	480
BmrFI	CCNGG	6 cut(s)	509, 610, 720, 756, 807, 898
BmsI	GCATC	3 cut(s)	4, 108, 781
BpmI	CTGGAG	1 cut(s)	828
BpuMI	CCSGG	2 cut(s)	509, 610
Bsa29I	ATCGAT	1 cut(s)	195
BsaHI	GRCGYC	2 cut(s)	150, 402
BsaJI	CCNNGG	5 cut(s)	292, 492, 555, 719, 755
BsaWI	WCCGGW	1 cut(s)	991
BsaXI	ACNNNNNCTCC	4 cut(s)	614, 644, 801, 831
Bsc4I	CCNNNNNNNGG	4 cut(s)	40, 439, 806, 948
BseBI	CCWGG	4 cut(s)	720, 756, 807, 898
BseCI	ATCGAT	1 cut(s)	195
BseDI	CCNNGG	5 cut(s)	292, 492, 555, 719, 755
BseGI	GGATG	3 cut(s)	108, 480, 796
BseLI	CCNNNNNNNGG	4 cut(s)	40, 439, 806, 948
BseRI	GAGGAG	1 cut(s)	515
BseSI	GKGCMC	3 cut(s)	303, 482, 660
BseXI	GCAGC	1 cut(s)	17
BsgI	GTGCAG	1 cut(s)	538
Bsh1236I	CGCG	1 cut(s)	260
BshFI	GGCC	2 cut(s)	84, 480
BshVI	ATCGAT	1 cut(s)	195
BsiSI	CCGG	4 cut(s)	96, 509, 609, 992
BslI	CCNNNNNNNGG	4 cut(s)	40, 439, 806, 948
BsmAI	GTCTC	2 cut(s)	314, 1077
BsmBI	CGTCTC	1 cut(s)	314
BsnI	GGCC	2 cut(s)	84, 480
Bsp120I	GGGCCC	1 cut(s)	478
Bsp1286I	GDGCHC	3 cut(s)	303, 482, 660
Bsp143I	GATC	8 cut(s)	69, 196, 246, 504, 685, 715, 832, 1077
BspACI	CCGC	4 cut(s)	177, 258, 443, 497
BspANI	GGCC	2 cut(s)	84, 480
BspDI	ATCGAT	1 cut(s)	195
BspFNI	CGCG	1 cut(s)	260
BspHI	TCATGA	1 cut(s)	346
BspLI	GGNNCC	1 cut(s)	480
BspMI	ACCTGC	1 cut(s)	457
BspPI	GGATC	2 cut(s)	499, 710
BssECI	CCNNGG	5 cut(s)	292, 492, 555, 719, 755
BssMI	GATC	8 cut(s)	69, 196, 246, 504, 685, 715, 832, 1077
BssNI	GRCGYC	2 cut(s)	150, 402
BssSI	CACGAG	1 cut(s)	359
BssT1I	CCWWGG	1 cut(s)	555
Bst2BI	CACGAG	1 cut(s)	359
Bst2UI	CCWGG	4 cut(s)	720, 756, 807, 898
Bst4CI	ACNGT	5 cut(s)	227, 434, 571, 694, 733
Bst6I	CTCTTC	1 cut(s)	384
BstACI	GRCGYC	2 cut(s)	150, 402
BstC8I	GCNNGC	4 cut(s)	299, 415, 448, 452
BstDEI	CTNAG	1 cut(s)	66
BstDSI	CCRYGG	1 cut(s)	292
BstF5I	GGATG	3 cut(s)	108, 480, 796
BstFNI	CGCG	1 cut(s)	260
BstKTI	GATC	8 cut(s)	72, 199, 249, 507, 688, 718, 835, 1080
BstMAI	GTCTC	2 cut(s)	314, 1077
BstMBI	GATC	8 cut(s)	69, 196, 246, 504, 685, 715, 832, 1077
BstMWI	GCNNNNNNNGC	3 cut(s)	14, 338, 769
BstNI	CCWGG	4 cut(s)	720, 756, 807, 898
BstSCI	CCNGG	6 cut(s)	507, 608, 718, 754, 805, 896
BstSFI	CTRYAG	1 cut(s)	1048
BstSLI	GKGCMC	3 cut(s)	303, 482, 660
BstUI	CGCG	1 cut(s)	260
BstV1I	GCAGC	1 cut(s)	17
BstX2I	RGATCY	2 cut(s)	504, 832
BstXI	CCANNNNNNTGG	1 cut(s)	755
BstYI	RGATCY	2 cut(s)	504, 832
Bsu15I	ATCGAT	1 cut(s)	195
BsuRI	GGCC	2 cut(s)	84, 480
BsuTUI	ATCGAT	1 cut(s)	195
BtgI	CCRYGG	1 cut(s)	292
BtgZI	GCGATG	1 cut(s)	690
BtsCI	GGATG	3 cut(s)	108, 480, 796
BtsI	GCAGTG	2 cut(s)	171, 658
BtsIMutI	CAGTG	2 cut(s)	171, 658
BveI	ACCTGC	1 cut(s)	457
Cac8I	GCNNGC	4 cut(s)	299, 415, 448, 452
CciI	TCATGA	1 cut(s)	346
Cfr13I	GGNCC	3 cut(s)	478, 479, 968
ClaI	ATCGAT	1 cut(s)	195
CseI	GACGC	1 cut(s)	391
Csp6I	GTAC	5 cut(s)	311, 376, 430, 435, 752
CspCI	CAANNNNNGTGG	4 cut(s)	540, 575, 764, 799
CviAII	CATG	6 cut(s)	267, 347, 406, 455, 548, 749
CviQI	GTAC	5 cut(s)	311, 376, 430, 435, 752
DdeI	CTNAG	1 cut(s)	66
DpnI	GATC	8 cut(s)	71, 198, 248, 506, 687, 717, 834, 1079
DpnII	GATC	8 cut(s)	69, 196, 246, 504, 685, 715, 832, 1077
DraIII	CACNNNGTG	2 cut(s)	298, 364
Eam1104I	CTCTTC	1 cut(s)	384
EarI	CTCTTC	1 cut(s)	384
EciI	GGCGGA	1 cut(s)	512
Eco130I	CCWWGG	1 cut(s)	555
Eco147I	AGGCCT	1 cut(s)	84
Eco24I	GRGCYC	1 cut(s)	482
Eco47I	GGWCC	1 cut(s)	968
Eco57I	CTGAAG	1 cut(s)	824
EcoRI	GAATTC	1 cut(s)	53
EcoRII	CCWGG	4 cut(s)	718, 754, 805, 896
EcoT14I	CCWWGG	1 cut(s)	555
EcoT38I	GRGCYC	1 cut(s)	482
ErhI	CCWWGG	1 cut(s)	555
Esp3I	CGTCTC	1 cut(s)	314
FaeI	CATG	6 cut(s)	270, 350, 409, 458, 551, 752
FatI	CATG	6 cut(s)	266, 346, 405, 454, 547, 748
Fnu4HI	GCNGC	4 cut(s)	6, 177, 258, 444
FokI	GGATG	3 cut(s)	95, 487, 803
FriOI	GRGCYC	1 cut(s)	482
Fsp4HI	GCNGC	4 cut(s)	6, 177, 258, 444
FspBI	CTAG	1 cut(s)	938
GluI	GCNGC	4 cut(s)	6, 177, 258, 444
GsuI	CTGGAG	1 cut(s)	828
HaeIII	GGCC	2 cut(s)	84, 480
HapII	CCGG	4 cut(s)	96, 509, 609, 992
HgaI	GACGC	1 cut(s)	391
Hin1I	GRCGYC	2 cut(s)	150, 402
Hin1II	CATG	6 cut(s)	270, 350, 409, 458, 551, 752
HinfI	GANTC	4 cut(s)	62, 92, 458, 638
HpaII	CCGG	4 cut(s)	96, 509, 609, 992
HphI	GGTGA	4 cut(s)	215, 376, 575, 981
Hpy166II	GTNNAC	2 cut(s)	127, 968
Hpy188I	TCNGA	9 cut(s)	74, 91, 148, 205, 493, 589, 637, 843, 1077
Hpy188III	TCNNGA	3 cut(s)	24, 347, 472
Hpy8I	GTNNAC	2 cut(s)	127, 968
Hpy99I	CGWCG	2 cut(s)	62, 152
HpyAV	CCTTC	5 cut(s)	34, 322, 361, 584, 895
HpyCH4III	ACNGT	5 cut(s)	227, 434, 571, 694, 733
HpyCH4IV	ACGT	3 cut(s)	150, 323, 629
HpyCH4V	TGCA	7 cut(s)	17, 466, 519, 551, 742, 763, 874
HpyF10VI	GCNNNNNNNGC	3 cut(s)	14, 338, 769
HpyF3I	CTNAG	1 cut(s)	66
HpySE526I	ACGT	3 cut(s)	150, 323, 629
Hsp92I	GRCGYC	2 cut(s)	150, 402
Hsp92II	CATG	6 cut(s)	270, 350, 409, 458, 551, 752
Kzo9I	GATC	8 cut(s)	69, 196, 246, 504, 685, 715, 832, 1077
LmnI	GCTCC	1 cut(s)	622
Lsp1109I	GCAGC	1 cut(s)	17
LweI	GCATC	3 cut(s)	4, 108, 781
MaeI	CTAG	1 cut(s)	938
MaeII	ACGT	3 cut(s)	150, 323, 629
MaeIII	GTNAC	3 cut(s)	217, 727, 987
MalI	GATC	8 cut(s)	71, 198, 248, 506, 687, 717, 834, 1079
MboI	GATC	8 cut(s)	69, 196, 246, 504, 685, 715, 832, 1077
MboII	GAAGA	6 cut(s)	112, 268, 401, 827, 830, 965
MfeI	CAATTG	1 cut(s)	918
MflI	RGATCY	2 cut(s)	504, 832
MhlI	GDGCHC	3 cut(s)	303, 482, 660
MluCI	AATT	7 cut(s)	53, 116, 234, 912, 918, 1031, 1042
MlyI	GAGTC	2 cut(s)	71, 452
MmeI	TCCRAC	2 cut(s)	171, 582
MroXI	GAANNNNTTC	1 cut(s)	53
MseI	TTAA	1 cut(s)	78
MslI	CAYNNNNRTG	1 cut(s)	777
MspI	CCGG	4 cut(s)	96, 509, 609, 992
MspR9I	CCNGG	6 cut(s)	509, 610, 720, 756, 807, 898
MunI	CAATTG	1 cut(s)	918
MvaI	CCWGG	4 cut(s)	720, 756, 807, 898
MvnI	CGCG	1 cut(s)	260
MwoI	GCNNNNNNNGC	3 cut(s)	14, 338, 769
NciI	CCSGG	2 cut(s)	509, 610
NdeII	GATC	8 cut(s)	69, 196, 246, 504, 685, 715, 832, 1077
NlaIII	CATG	6 cut(s)	270, 350, 409, 458, 551, 752
NlaIV	GGNNCC	1 cut(s)	480
NmuCI	GTSAC	2 cut(s)	727, 987
PagI	TCATGA	1 cut(s)	346
PceI	AGGCCT	1 cut(s)	84
PcsI	WCGNNNNNNNCGW	1 cut(s)	300
PdmI	GAANNNNTTC	1 cut(s)	53
PfeI	GAWTC	2 cut(s)	92, 638
PfoI	TCCNGGA	2 cut(s)	507, 896
PkrI	GCNGC	4 cut(s)	7, 178, 259, 445
PleI	GAGTC	2 cut(s)	70, 452
PpsI	GAGTC	2 cut(s)	70, 452
Psp6I	CCWGG	4 cut(s)	718, 754, 805, 896
PspGI	CCWGG	4 cut(s)	718, 754, 805, 896
PspN4I	GGNNCC	1 cut(s)	480
PspOMI	GGGCCC	1 cut(s)	478
PspPI	GGNCC	3 cut(s)	478, 479, 968
PsuI	RGATCY	2 cut(s)	504, 832
RsaI	GTAC	5 cut(s)	312, 377, 431, 436, 753
RsaNI	GTAC	5 cut(s)	311, 376, 430, 435, 752
RseI	CAYNNNNRTG	1 cut(s)	777
SaqAI	TTAA	1 cut(s)	78
SatI	GCNGC	4 cut(s)	6, 177, 258, 444
Sau3AI	GATC	8 cut(s)	69, 196, 246, 504, 685, 715, 832, 1077
Sau96I	GGNCC	3 cut(s)	478, 479, 968
ScaI	AGTACT	1 cut(s)	377
SchI	GAGTC	2 cut(s)	71, 452
ScrFI	CCNGG	6 cut(s)	509, 610, 720, 756, 807, 898
SduI	GDGCHC	3 cut(s)	303, 482, 660
SfaNI	GCATC	3 cut(s)	4, 108, 781
SfcI	CTRYAG	1 cut(s)	1048
SinI	GGWCC	1 cut(s)	968
SmiMI	CAYNNNNRTG	1 cut(s)	777
Sse9I	AATT	7 cut(s)	53, 116, 234, 912, 918, 1031, 1042
SseBI	AGGCCT	1 cut(s)	84
SsiI	CCGC	4 cut(s)	177, 258, 443, 497
SspMI	CTAG	1 cut(s)	938
StuI	AGGCCT	1 cut(s)	84
StyD4I	CCNGG	6 cut(s)	507, 608, 718, 754, 805, 896
StyI	CCWWGG	1 cut(s)	555
TaaI	ACNGT	5 cut(s)	227, 434, 571, 694, 733
TaiI	ACGT	3 cut(s)	153, 326, 632
TaqI	TCGA	7 cut(s)	57, 195, 315, 641, 910, 1012, 1080
TaqII	GACCGA	1 cut(s)	48
TasI	AATT	7 cut(s)	53, 116, 234, 912, 918, 1031, 1042
TatI	WGTACW	1 cut(s)	375
TauI	GCSGC	3 cut(s)	179, 260, 446
TfiI	GAWTC	2 cut(s)	92, 638
Tru1I	TTAA	1 cut(s)	78
Tru9I	TTAA	1 cut(s)	78
TscAI	CASTG	2 cut(s)	178, 665
TseFI	GTSAC	2 cut(s)	727, 987
TseI	GCWGC	1 cut(s)	5
Tsp45I	GTSAC	2 cut(s)	727, 987
TspDTI	ATGAA	2 cut(s)	335, 536
TspGWI	ACGGA	1 cut(s)	1037
TspRI	CASTG	2 cut(s)	178, 665
VpaK11BI	GGWCC	1 cut(s)	968
XapI	RAATTY	4 cut(s)	53, 912, 1031, 1042
XmnI	GAANNNNTTC	1 cut(s)	53
XspI	CTAG	1 cut(s)	938
ZraI	GACGTC	1 cut(s)	151
ZrmI	AGTACT	1 cut(s)	377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.