Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0006415

Physical Location & Seq

Genomic Coordinates Forward (+)

3159840 .. 3162180

Gene Structure 2341 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1028400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGCACAAGTCTATCAATTCTACTCACAAAATGGCAGCCAAAATTGATGCAACATCGGGATCATACGACCGCATGAAAGAAGTGAAAGAATTCGACGATTCGAAGATGGGAGTCAAAGGCCTCTCCGATTCAGGCATCACTGTCATCCCTCAAATTTTTGTCCACGACCCTCAAACCTTATCAGACCTCAAACCCTCATCCAAAAACACCACCACCACCATTCCCACCATCGACCTTTCTCACATCAACTCAGCCGCCCACCGCCCCAAAATCGTTGACCAAGTGAAATCCGCCTCCAAAACCTTTGGCTTCTTCCAAGTCACCAACCATGGGGTGCCCGTCTCCGTTTTGGATGAAACGATCACCGCTGTCAAAGCGTTCCACGAGCTGCCGCAGGAGGACAGAGCCAAGTACTACAAGCGAAATGAAGGAAAGGGAGTCATGTACGCTAGCAATGCCGACTTGTACCGCACATCAGCCGCCAGCTGGCGTGATTCGCTACAAGTGTGGATGAGCCCGGAGAGGGGCAAGGCCGAGGAGGTACCTGAGGCGTGTCGGGAAGAGTTGTTTCTGGTGGGGCATTGCTATCCTTATTGTCCCCAGCCTGATCGGACCATTGGGATTACGGCGCATACCTATGTTACGGCTCTGACGGTTCTGTTGCGGAACCATGTACCTGGGTTGCAAGTTAGGCATGAGAATGAGTGGCTGGATGTGAAGACTGTGCCCGGAGGTTTGATTATTAACGTTGGAGACTTGCTTCAGATCATCTCCAATGGGGAGTATAAAAGTGTGCAGCACAGGGTGTTGGCCAACTCATGGAAAGAAGCTCTAATCTCTGTTGTGATGTTTTTTTACCATACCAAATGGAGAGAAGATAATTACTATGGACCTCTTCCTGAGCTTTTGTCACCAGAGAAACCACCAATCTATCGAGACTTCACTAAACATGAACTACTTGAAAATTACTATAGCAAAGGATTAGATAGCAAATCTTTCATTGACAAAGTCACAATAAAAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

342

Amino Acids

38.57

Weight (kDa)

7.25

Isoelectric Point (pI)

38.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	74 - 174	1.5e-20	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	191 - 283	1.8e-23	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006415)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g19280 FvH4_6g19280 FvH4_6g19281
malus_domestica	MD12G1028400.v1.1 MD12G1028500.v1.1 MD14G1028700.v1.1
prunus_persica	Prupe.7G102900_v2.0.a1 Prupe.7G103000_v2.0.a1
pyrus_communis	pycom12g02720 pycom12g02730 pycom14g02670 pycom14g02680
rosa_chinensis	RchiOBHm_Chr3g0474491
rosa_laevigata	RLG00000023917 RLG00000023927 RLG00000023928
rosa_multiflora	Rmu_sc0001353.1_g000045 Rmu_sc0039676.1_g000001
rosa_roxburghii	Rroxscaffold_6G00407120 Rroxscaffold_6G00407300
rosa_rugosa	Rorug03G0140600 Rorug03G0141100
rosa_samantha	Rh3AG192000 Rh3BG221500 Rh3CG216200 Rh3DG216900
rosa_wichuraiana	Rw3G017450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	541
AccB1I	GGYRCC	2 cut(s)	334, 541
AccB7I	CCANNNNNTGG	1 cut(s)	819
AciI	CCGC	9 cut(s)	70, 255, 262, 291, 366, 392, 469, 480, 664
AclI	AACGTT	1 cut(s)	747
AclWI	GGATC	1 cut(s)	67
AcoI	YGGCCR	1 cut(s)	810
AcsI	RAATTY	2 cut(s)	89, 153
AcuI	CTGAAG	1 cut(s)	746
AdeI	CACNNNGTG	1 cut(s)	805
AfaI	GTAC	5 cut(s)	413, 446, 467, 543, 675
AfiI	CCNNNNNNNGG	5 cut(s)	330, 486, 523, 524, 819
AgsI	TTSAA	1 cut(s)	962
AjnI	CCWGG	1 cut(s)	676
AluBI	AGCT	4 cut(s)	388, 486, 830, 904
AluI	AGCT	4 cut(s)	388, 486, 830, 904
Alw26I	GTCTC	3 cut(s)	346, 747, 930
AlwI	GGATC	1 cut(s)	67
AoxI	GGCC	3 cut(s)	118, 531, 810
ApeKI	GCWGC	3 cut(s)	35, 388, 796
ApoI	RAATTY	2 cut(s)	89, 153
Asp700I	GAANNNNTTC	1 cut(s)	89
Asp718I	GGTACC	1 cut(s)	541
AspLEI	GCGC	1 cut(s)	631
AspS9I	GGNCC	2 cut(s)	612, 890
AsuC2I	CCSGG	2 cut(s)	518, 729
AsuHPI	GGTGA	3 cut(s)	313, 355, 903
AsuII	TTCGAA	1 cut(s)	101
AsuNHI	GCTAGC	1 cut(s)	449
AvaII	GGWCC	2 cut(s)	612, 890
AxyI	CCTNAGG	1 cut(s)	546
BaeGI	GKGCMC	2 cut(s)	339, 729
BalI	TGGCCA	1 cut(s)	812
BanI	GGYRCC	2 cut(s)	334, 541
BanII	GRGCYC	1 cut(s)	518
BauI	CACGAG	1 cut(s)	383
BbsI	GAAGAC	1 cut(s)	725
BbvI	GCAGC	3 cut(s)	47, 375, 808
BccI	CCATC	2 cut(s)	100, 236
BceAI	ACGGC	2 cut(s)	642, 660
BciT130I	CCWGG	1 cut(s)	678
BcnI	CCSGG	2 cut(s)	518, 729
BcoDI	GTCTC	3 cut(s)	346, 747, 930
BfaI	CTAG	1 cut(s)	450
BfmI	CTRYAG	1 cut(s)	970
BisI	GCNGC	6 cut(s)	36, 255, 389, 392, 480, 797
BlsI	GCNGC	6 cut(s)	37, 256, 390, 393, 481, 798
BmcAI	AGTACT	1 cut(s)	413
Bme1390I	CCNGG	3 cut(s)	518, 678, 729
Bme18I	GGWCC	2 cut(s)	612, 890
BmgT120I	GGNCC	2 cut(s)	612, 890
BmiI	GGNNCC	3 cut(s)	336, 543, 668
BmrFI	CCNGG	3 cut(s)	518, 678, 729
BmsI	GCATC	2 cut(s)	37, 144
BmtI	GCTAGC	1 cut(s)	453
BpiI	GAAGAC	1 cut(s)	725
Bpu10I	CCTNAGC	1 cut(s)	900
Bpu14I	TTCGAA	1 cut(s)	101
BpuMI	CCSGG	2 cut(s)	518, 729
BsaJI	CCNNGG	3 cut(s)	328, 534, 677
Bsc4I	CCNNNNNNNGG	5 cut(s)	330, 486, 523, 524, 819
Bse21I	CCTNAGG	1 cut(s)	546
Bse3DI	GCAATG	2 cut(s)	460, 580
BseBI	CCWGG	1 cut(s)	678
BseDI	CCNNGG	3 cut(s)	328, 534, 677
BseGI	GGATG	5 cut(s)	144, 197, 358, 516, 718
BseLI	CCNNNNNNNGG	5 cut(s)	330, 486, 523, 524, 819
BseMI	GCAATG	2 cut(s)	460, 580
BseMII	CTCAG	3 cut(s)	264, 537, 891
BseRI	GAGGAG	1 cut(s)	551
BseSI	GKGCMC	2 cut(s)	339, 729
BseXI	GCAGC	3 cut(s)	47, 375, 808
BseYI	CCCAGC	1 cut(s)	600
BsgI	GTGCAG	1 cut(s)	815
Bsh1285I	CGRYCG	1 cut(s)	70
BshFI	GGCC	3 cut(s)	120, 533, 812
BshNI	GGYRCC	2 cut(s)	334, 541
BsiEI	CGRYCG	1 cut(s)	70
BsiSI	CCGG	2 cut(s)	518, 729
BslFI	GGGAC	1 cut(s)	582
BslI	CCNNNNNNNGG	5 cut(s)	330, 486, 523, 524, 819
BsmAI	GTCTC	3 cut(s)	346, 747, 930
BsmBI	CGTCTC	1 cut(s)	346
BsmFI	GGGAC	1 cut(s)	582
BsnI	GGCC	3 cut(s)	120, 533, 812
Bsp119I	TTCGAA	1 cut(s)	101
Bsp1286I	GDGCHC	3 cut(s)	339, 518, 729
Bsp143I	GATC	4 cut(s)	59, 360, 607, 765
Bsp19I	CCATGG	1 cut(s)	328
BspACI	CCGC	9 cut(s)	70, 255, 262, 291, 366, 392, 469, 480, 664
BspANI	GGCC	3 cut(s)	120, 533, 812
BspCNI	CTCAG	3 cut(s)	263, 538, 892
BspLI	GGNNCC	3 cut(s)	336, 543, 668
BspOI	GCTAGC	1 cut(s)	453
BspPI	GGATC	1 cut(s)	67
BspT104I	TTCGAA	1 cut(s)	101
BspT107I	GGYRCC	2 cut(s)	334, 541
BsrDI	GCAATG	2 cut(s)	460, 580
BssECI	CCNNGG	3 cut(s)	328, 534, 677
BssMI	GATC	4 cut(s)	59, 360, 607, 765
BssSI	CACGAG	1 cut(s)	383
BssT1I	CCWWGG	1 cut(s)	328
Bst2BI	CACGAG	1 cut(s)	383
Bst2UI	CCWGG	1 cut(s)	678
Bst4CI	ACNGT	3 cut(s)	142, 655, 724
Bst6I	CTCTTC	2 cut(s)	555, 900
BstBI	TTCGAA	1 cut(s)	101
BstC8I	GCNNGC	3 cut(s)	451, 484, 488
BstDEI	CTNAG	3 cut(s)	250, 546, 900
BstDSI	CCRYGG	1 cut(s)	328
BstF5I	GGATG	5 cut(s)	144, 197, 358, 516, 718
BstHHI	GCGC	1 cut(s)	631
BstKTI	GATC	4 cut(s)	62, 363, 610, 768
BstMAI	GTCTC	3 cut(s)	346, 747, 930
BstMBI	GATC	4 cut(s)	59, 360, 607, 765
BstMCI	CGRYCG	1 cut(s)	70
BstMWI	GCNNNNNNNGC	4 cut(s)	374, 455, 496, 691
BstNI	CCWGG	1 cut(s)	678
BstSCI	CCNGG	3 cut(s)	516, 676, 727
BstSFI	CTRYAG	1 cut(s)	970
BstSLI	GKGCMC	2 cut(s)	339, 729
BstV1I	GCAGC	3 cut(s)	47, 375, 808
BstV2I	GAAGAC	1 cut(s)	725
BstXI	CCANNNNNNTGG	1 cut(s)	677
Bsu36I	CCTNAGG	1 cut(s)	546
BsuRI	GGCC	3 cut(s)	120, 533, 812
BtgI	CCRYGG	1 cut(s)	328
BtsCI	GGATG	5 cut(s)	144, 197, 358, 516, 718
BtsIMutI	CAGTG	1 cut(s)	138
Cac8I	GCNNGC	3 cut(s)	451, 484, 488
CfoI	GCGC	1 cut(s)	631
Cfr13I	GGNCC	2 cut(s)	612, 890
Csp6I	GTAC	5 cut(s)	412, 445, 466, 542, 674
CviAII	CATG	7 cut(s)	73, 329, 442, 671, 695, 819, 950
CviQI	GTAC	5 cut(s)	412, 445, 466, 542, 674
DdeI	CTNAG	3 cut(s)	250, 546, 900
DpnI	GATC	4 cut(s)	61, 362, 609, 767
DpnII	GATC	4 cut(s)	59, 360, 607, 765
DraIII	CACNNNGTG	1 cut(s)	805
EaeI	YGGCCR	1 cut(s)	810
Eam1104I	CTCTTC	2 cut(s)	555, 900
EarI	CTCTTC	2 cut(s)	555, 900
EciI	GGCGGA	1 cut(s)	280
Eco130I	CCWWGG	1 cut(s)	328
Eco147I	AGGCCT	1 cut(s)	120
Eco24I	GRGCYC	1 cut(s)	518
Eco47I	GGWCC	2 cut(s)	612, 890
Eco57I	CTGAAG	1 cut(s)	746
Eco81I	CCTNAGG	1 cut(s)	546
EcoRI	GAATTC	1 cut(s)	89
EcoRII	CCWGG	1 cut(s)	676
EcoT14I	CCWWGG	1 cut(s)	328
EcoT38I	GRGCYC	1 cut(s)	518
ErhI	CCWWGG	1 cut(s)	328
Esp3I	CGTCTC	1 cut(s)	346
FaeI	CATG	7 cut(s)	76, 332, 445, 674, 698, 822, 953
FaqI	GGGAC	1 cut(s)	582
FatI	CATG	7 cut(s)	72, 328, 441, 670, 694, 818, 949
Fnu4HI	GCNGC	6 cut(s)	36, 255, 389, 392, 480, 797
FokI	GGATG	5 cut(s)	131, 184, 365, 523, 725
FriOI	GRGCYC	1 cut(s)	518
Fsp4HI	GCNGC	6 cut(s)	36, 255, 389, 392, 480, 797
FspBI	CTAG	1 cut(s)	450
GlaI	GCGC	1 cut(s)	630
GluI	GCNGC	6 cut(s)	36, 255, 389, 392, 480, 797
GsaI	CCCAGC	1 cut(s)	604
HaeIII	GGCC	3 cut(s)	120, 533, 812
HapII	CCGG	2 cut(s)	518, 729
HhaI	GCGC	1 cut(s)	631
Hin1II	CATG	7 cut(s)	76, 332, 445, 674, 698, 822, 953
Hin6I	GCGC	1 cut(s)	629
HinP1I	GCGC	1 cut(s)	629
HincII	GTYRAC	1 cut(s)	277
HindII	GTYRAC	1 cut(s)	277
HinfI	GANTC	5 cut(s)	98, 111, 128, 438, 494
HpaII	CCGG	2 cut(s)	518, 729
HphI	GGTGA	3 cut(s)	313, 355, 903
Hpy166II	GTNNAC	2 cut(s)	163, 277
Hpy188I	TCNGA	5 cut(s)	127, 184, 612, 651, 765
Hpy188III	TCNNGA	4 cut(s)	57, 557, 899, 935
Hpy8I	GTNNAC	2 cut(s)	163, 277
Hpy99I	CGWCG	1 cut(s)	98
HpyAV	CCTTC	1 cut(s)	422
HpyCH4III	ACNGT	3 cut(s)	142, 655, 724
HpyCH4IV	ACGT	1 cut(s)	747
HpyCH4V	TGCA	4 cut(s)	4, 50, 685, 796
HpyF10VI	GCNNNNNNNGC	4 cut(s)	374, 455, 496, 691
HpyF3I	CTNAG	3 cut(s)	250, 546, 900
HpySE526I	ACGT	1 cut(s)	747
Hsp92II	CATG	7 cut(s)	76, 332, 445, 674, 698, 822, 953
HspAI	GCGC	1 cut(s)	629
KpnI	GGTACC	1 cut(s)	545
Kzo9I	GATC	4 cut(s)	59, 360, 607, 765
Lsp1109I	GCAGC	3 cut(s)	47, 375, 808
LweI	GCATC	2 cut(s)	37, 144
MaeI	CTAG	1 cut(s)	450
MaeII	ACGT	1 cut(s)	747
MaeIII	GTNAC	4 cut(s)	319, 640, 909, 1009
MalI	GATC	4 cut(s)	61, 362, 609, 767
MboI	GATC	4 cut(s)	59, 360, 607, 765
MboII	GAAGA	6 cut(s)	115, 304, 572, 730, 887, 887
MhlI	GDGCHC	3 cut(s)	339, 518, 729
MlsI	TGGCCA	1 cut(s)	812
MluCI	AATT	6 cut(s)	16, 42, 89, 153, 880, 964
MluNI	TGGCCA	1 cut(s)	812
MlyI	GAGTC	2 cut(s)	120, 447
MmeI	TCCRAC	1 cut(s)	730
Mox20I	TGGCCA	1 cut(s)	812
MroXI	GAANNNNTTC	1 cut(s)	89
MscI	TGGCCA	1 cut(s)	812
MseI	TTAA	1 cut(s)	744
MslI	CAYNNNNRTG	2 cut(s)	636, 699
Msp20I	TGGCCA	1 cut(s)	812
MspA1I	CMGCKG	2 cut(s)	368, 486
MspI	CCGG	2 cut(s)	518, 729
MspR9I	CCNGG	3 cut(s)	518, 678, 729
MvaI	CCWGG	1 cut(s)	678
MwoI	GCNNNNNNNGC	4 cut(s)	374, 455, 496, 691
NciI	CCSGG	2 cut(s)	518, 729
NcoI	CCATGG	1 cut(s)	328
NdeII	GATC	4 cut(s)	59, 360, 607, 765
NheI	GCTAGC	1 cut(s)	449
NlaIII	CATG	7 cut(s)	76, 332, 445, 674, 698, 822, 953
NlaIV	GGNNCC	3 cut(s)	336, 543, 668
NmeAIII	GCCGAG	1 cut(s)	559
NmuCI	GTSAC	3 cut(s)	319, 909, 1009
NspV	TTCGAA	1 cut(s)	101
PceI	AGGCCT	1 cut(s)	120
PdmI	GAANNNNTTC	1 cut(s)	89
PfeI	GAWTC	3 cut(s)	98, 128, 494
PflFI	GACNNNGTC	1 cut(s)	1007
PflMI	CCANNNNNTGG	1 cut(s)	819
PkrI	GCNGC	6 cut(s)	37, 256, 390, 393, 481, 798
PleI	GAGTC	2 cut(s)	119, 446
PpsI	GAGTC	2 cut(s)	119, 446
Psp1406I	AACGTT	1 cut(s)	747
Psp6I	CCWGG	1 cut(s)	676
PspFI	CCCAGC	1 cut(s)	600
PspGI	CCWGG	1 cut(s)	676
PspN4I	GGNNCC	3 cut(s)	336, 543, 668
PspPI	GGNCC	2 cut(s)	612, 890
PsyI	GACNNNGTC	1 cut(s)	1007
PvuII	CAGCTG	1 cut(s)	486
RsaI	GTAC	5 cut(s)	413, 446, 467, 543, 675
RsaNI	GTAC	5 cut(s)	412, 445, 466, 542, 674
RseI	CAYNNNNRTG	2 cut(s)	636, 699
SaqAI	TTAA	1 cut(s)	744
SatI	GCNGC	6 cut(s)	36, 255, 389, 392, 480, 797
Sau3AI	GATC	4 cut(s)	59, 360, 607, 765
Sau96I	GGNCC	2 cut(s)	612, 890
ScaI	AGTACT	1 cut(s)	413
SchI	GAGTC	2 cut(s)	120, 447
ScrFI	CCNGG	3 cut(s)	518, 678, 729
SduI	GDGCHC	3 cut(s)	339, 518, 729
SfaNI	GCATC	2 cut(s)	37, 144
SfcI	CTRYAG	1 cut(s)	970
SfuI	TTCGAA	1 cut(s)	101
SinI	GGWCC	2 cut(s)	612, 890
SmiMI	CAYNNNNRTG	2 cut(s)	636, 699
Sse9I	AATT	6 cut(s)	16, 42, 89, 153, 880, 964
SseBI	AGGCCT	1 cut(s)	120
SsiI	CCGC	9 cut(s)	70, 255, 262, 291, 366, 392, 469, 480, 664
SspMI	CTAG	1 cut(s)	450
StuI	AGGCCT	1 cut(s)	120
StyD4I	CCNGG	3 cut(s)	516, 676, 727
StyI	CCWWGG	1 cut(s)	328
TaaI	ACNGT	3 cut(s)	142, 655, 724
TaiI	ACGT	1 cut(s)	750
TaqI	TCGA	4 cut(s)	93, 101, 231, 934
TasI	AATT	6 cut(s)	16, 42, 89, 153, 880, 964
TatI	WGTACW	1 cut(s)	411
TauI	GCSGC	3 cut(s)	257, 394, 482
TfiI	GAWTC	3 cut(s)	98, 128, 494
Tru1I	TTAA	1 cut(s)	744
Tru9I	TTAA	1 cut(s)	744
TscAI	CASTG	1 cut(s)	145
TseFI	GTSAC	3 cut(s)	319, 909, 1009
TseI	GCWGC	3 cut(s)	35, 388, 796
Tsp45I	GTSAC	3 cut(s)	319, 909, 1009
TspDTI	ATGAA	5 cut(s)	89, 369, 441, 966, 988
TspGWI	ACGGA	1 cut(s)	334
TspRI	CASTG	1 cut(s)	145
Tth111I	GACNNNGTC	1 cut(s)	1007
Van91I	CCANNNNNTGG	1 cut(s)	819
VpaK11BI	GGWCC	2 cut(s)	612, 890
XapI	RAATTY	2 cut(s)	89, 153
XmnI	GAANNNNTTC	1 cut(s)	89
XspI	CTAG	1 cut(s)	450
ZrmI	AGTACT	1 cut(s)	413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.