Rroxscaffold_6G00407300

1-aminocyclopropane-1-carboxylate oxidase homolog

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Reverse (-)
29980470 .. 29984277
3808 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00407300.1

Sequence Viewer

Length: 1383 bp
ATGGGGATGATCGGCAAGAGGAGGAGATCACCATGGTGGGAAGGATCGGCCCATGCAACGCGGAAAACTCGTTTTCCGGCGGGTCGGGTAGCTTCGGGGGAGGGGCTTCGATCCGGCTATAGGAGCGGCGGCGAGCAAAGCGGTGGCACCAGGGCGGTGGCCGGCGTGGTCGAGCACAAGGAGGGCGGGTCGCCGGCGGAGGTGGCCGGAGGAAGAAGAAAAGTCGGGTCGGGTCGAGAAGGATCTGCGGGTCCGAAGAACCTTCATTCTAAAATGGCGGCTATTGATGCAACATCAGGATATGACCGAGTGAAGGAAGTGAAACAATTCGACGAGTCTAAGATTGGAGTTAAAGGCCTCTCCGATTCCGGCATCACTTCCATCCCTCAATTCTTCGTCCACGACGCCGAAACCCTCTCCGACCTCAAACCCTCGTCCAAATACACAGCCGCCACCCTCCCCACTATCGATCTTTCAGACATCAACTCGGTTACTAACCGTGCCGAAATTGTTGAGCAGATCAAACTCGCCGCGAAAACATGGGGTTTCTTCCAAGTAATCAACCACGGCGTGCCCGTTTCGGTACTCGATGAGACGTTGAAGGCTGTAAAAGCGTTTCACGACCAGCCCCACGTGGTGAAGGCGAAGTACTACAAGCGAGAAGAGGGAAAGGGCATCATGTATGCCAGCAATAACGACTTGTACCGTACCAAGGCGGCGAGCTGGCATGACTCGTTGCAGGTCTGGATGGGCCCACAGCGTTCCGAGGCGGAGGAGATCCCGGAGATGTGCAGGAATGAGGTGGTTGCGTGGGATTTTCATGCAACCAAGGTGGGTGAAACTGTGATGGAGTTGCTTTCAGAAGGGTTAGGGTTGGAAGCCGGGAAGTTCAAGGAGCTTACGTTTTCGGATGCGAGGGTGATTGTTGGGCACTGCTATCCCTATTGTCCTCAACCCGATCTCACGGTGGGGATTACATCGCATACTGATCCTGGGATAGTGACAGTTCTTTTGCAGAACCATGTACCTGGGTTGCAAGTTAGGCATCAAAATGAGTGGGTGGATGTCAAGCCTGTGCCTGGAGGTTTGGTTATCAACATTGGAGATCTTCTTCAGATAATCTCCAATGGCGAGTATAAAAGCGTACAACATCGTGTGTTGGCCAACTCTTGGAAGGAATCCCGAATTTCGATTGTCATGTTTTTGAACCAAGGAATGTCGAAAGAAGATGGTTACTGTGGACCTCTCCCTGAGCTTTTATCATCTGAGAAACCACCAGTCTATCGTAATTTCACAGTGCAAGAATATGTTGAAAATTTCTACAGCAAGGGACTAGACAGCAAATCTCTTATTGAAAAAATCACAATAAAGAAGCATAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

460

Amino Acids

50.62

Weight (kDa)

8.43

Isoelectric Point (pI)

39.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 153 - 251 1e-19 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 308 - 403 5.9e-30 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 730
AccB1I GGYRCC 1 cut(s) 146
AccB7I CCANNNNNTGG 1 cut(s) 1170
AccBSI CCGCTC 1 cut(s) 126
AccII CGCG 2 cut(s) 61, 533
AclWI GGATC 5 cut(s) 52, 105, 250, 772, 983
AcoI YGGCCR 3 cut(s) 159, 204, 1161
AcsI RAATTY 2 cut(s) 1185, 1315
AcuI CTGAAG 1 cut(s) 1097
AcvI CACGTG 1 cut(s) 634
AcyI GRCGYC 1 cut(s) 405
AdeI CACNNNGTG 2 cut(s) 571, 637
AfaI GTAC 6 cut(s) 585, 650, 704, 709, 1026, 1146
AfiI CCNNNNNNNGG 5 cut(s) 120, 313, 712, 1079, 1170
AgsI TTSAA 5 cut(s) 601, 892, 1207, 1313, 1355
AjnI CCWGG 4 cut(s) 149, 991, 1027, 1078
AleI CACNNNNGTG 1 cut(s) 34
AluBI AGCT 4 cut(s) 92, 723, 898, 1255
AluI AGCT 4 cut(s) 92, 723, 898, 1255
Alw21I GWGCWC 1 cut(s) 177
Alw26I GTCTC 1 cut(s) 587
AlwI GGATC 5 cut(s) 52, 105, 250, 772, 983
AoxI GGCC 6 cut(s) 48, 159, 204, 355, 751, 1161
ApaI GGGCCC 1 cut(s) 755
ApoI RAATTY 2 cut(s) 1185, 1315
ArsI GACNNNNNNTTYG 2 cut(s) 994, 1026
Asp700I GAANNNNTTC 1 cut(s) 326
AspS9I GGNCC 5 cut(s) 49, 251, 751, 752, 1241
AsuC2I CCSGG 2 cut(s) 782, 883
AsuHPI GGTGA 4 cut(s) 21, 649, 848, 931
AvaII GGWCC 2 cut(s) 251, 1241
BaeGI GKGCMC 3 cut(s) 576, 755, 933
BalI TGGCCA 1 cut(s) 1163
BanI GGYRCC 1 cut(s) 146
BanII GRGCYC 1 cut(s) 755
BarI GAAGNNNNNNTAC 2 cut(s) 632, 664
BbrPI CACGTG 1 cut(s) 634
Bbv12I GWGCWC 1 cut(s) 177
BccI CCATC 4 cut(s) 389, 742, 841, 1223
BceAI ACGGC 1 cut(s) 583
BciT130I CCWGG 4 cut(s) 151, 993, 1029, 1080
BcnI CCSGG 2 cut(s) 782, 883
BcoDI GTCTC 1 cut(s) 587
BfaI CTAG 2 cut(s) 1334, 1381
BfmI CTRYAG 2 cut(s) 118, 1321
BfuAI ACCTGC 1 cut(s) 730
BglII AGATCT 1 cut(s) 1105
BisI GCNGC 6 cut(s) 127, 130, 279, 450, 531, 717
BlsI GCNGC 6 cut(s) 128, 131, 280, 451, 532, 718
BmcAI AGTACT 1 cut(s) 650
Bme1390I CCNGG 6 cut(s) 151, 782, 883, 993, 1029, 1080
Bme18I GGWCC 2 cut(s) 251, 1241
BmgT120I GGNCC 5 cut(s) 49, 251, 751, 752, 1241
BmiI GGNNCC 3 cut(s) 148, 252, 753
BmrFI CCNGG 6 cut(s) 151, 782, 883, 993, 1029, 1080
BmsI GCATC 5 cut(s) 277, 381, 684, 901, 1054
BpmI CTGGAG 1 cut(s) 1101
Bpu10I CCTNAGC 1 cut(s) 1251
BpuMI CCSGG 2 cut(s) 782, 883
Bsa29I ATCGAT 1 cut(s) 468
BsaAI YACGTR 1 cut(s) 634
BsaHI GRCGYC 1 cut(s) 405
BsaJI CCNNGG 9 cut(s) 32, 150, 565, 711, 765, 828, 992, 1028, 1210
BsaXI ACNNNNNCTCC 6 cut(s) 173, 203, 887, 917, 1074, 1104
Bsc4I CCNNNNNNNGG 5 cut(s) 120, 313, 712, 1079, 1170
Bse118I RCCGGY 2 cut(s) 161, 193
Bse1I ACTGG 1 cut(s) 1277
BseBI CCWGG 4 cut(s) 151, 993, 1029, 1080
BseCI ATCGAT 1 cut(s) 468
BseDI CCNNGG 9 cut(s) 32, 150, 565, 711, 765, 828, 992, 1028, 1210
BseGI GGATG 5 cut(s) 12, 381, 753, 916, 1069
BseLI CCNNNNNNNGG 5 cut(s) 120, 313, 712, 1079, 1170
BseMII CTCAG 2 cut(s) 1242, 1257
BseNI ACTGG 1 cut(s) 1277
BseRI GAGGAG 3 cut(s) 34, 37, 788
BseSI GKGCMC 3 cut(s) 576, 755, 933
BsgI GTGCAG 1 cut(s) 811
Bsh1236I CGCG 2 cut(s) 61, 533
BshFI GGCC 6 cut(s) 50, 161, 206, 357, 753, 1163
BshNI GGYRCC 1 cut(s) 146
BshVI ATCGAT 1 cut(s) 468
BsiHKAI GWGCWC 1 cut(s) 177
BsiSI CCGG 8 cut(s) 77, 114, 162, 194, 207, 369, 782, 882
BslFI GGGAC 1 cut(s) 1344
BslI CCNNNNNNNGG 5 cut(s) 120, 313, 712, 1079, 1170
BsmAI GTCTC 1 cut(s) 587
BsmBI CGTCTC 1 cut(s) 587
BsmFI GGGAC 1 cut(s) 1344
BsnI GGCC 6 cut(s) 50, 161, 206, 357, 753, 1163
Bsp120I GGGCCC 1 cut(s) 751
Bsp1286I GDGCHC 4 cut(s) 177, 576, 755, 933
Bsp19I CCATGG 1 cut(s) 32
BspANI GGCC 6 cut(s) 50, 161, 206, 357, 753, 1163
BspCNI CTCAG 2 cut(s) 1243, 1258
BspDI ATCGAT 1 cut(s) 468
BspFNI CGCG 2 cut(s) 61, 533
BspLI GGNNCC 3 cut(s) 148, 252, 753
BspMI ACCTGC 1 cut(s) 730
BspPI GGATC 5 cut(s) 52, 105, 250, 772, 983
BspT107I GGYRCC 1 cut(s) 146
BsrBI CCGCTC 1 cut(s) 126
BsrFI RCCGGY 2 cut(s) 161, 193
BsrI ACTGG 1 cut(s) 1277
BssAI RCCGGY 2 cut(s) 161, 193
BssECI CCNNGG 9 cut(s) 32, 150, 565, 711, 765, 828, 992, 1028, 1210
BssNI GRCGYC 1 cut(s) 405
BssT1I CCWWGG 4 cut(s) 32, 711, 828, 1210
Bst2UI CCWGG 4 cut(s) 151, 993, 1029, 1080
Bst4CI ACNGT 7 cut(s) 500, 707, 844, 967, 1006, 1238, 1297
Bst6I CTCTTC 1 cut(s) 657
BstACI GRCGYC 1 cut(s) 405
BstBAI YACGTR 1 cut(s) 634
BstC8I GCNNGC 7 cut(s) 134, 163, 195, 572, 688, 721, 725
BstDEI CTNAG 3 cut(s) 339, 1251, 1266
BstDSI CCRYGG 2 cut(s) 32, 565
BstF5I GGATG 5 cut(s) 12, 381, 753, 916, 1069
BstFNI CGCG 2 cut(s) 61, 533
BstMAI GTCTC 1 cut(s) 587
BstMWI GCNNNNNNNGC 6 cut(s) 123, 138, 203, 287, 611, 1042
BstNI CCWGG 4 cut(s) 151, 993, 1029, 1080
BstSCI CCNGG 6 cut(s) 149, 780, 881, 991, 1027, 1078
BstSFI CTRYAG 2 cut(s) 118, 1321
BstSLI GKGCMC 3 cut(s) 576, 755, 933
BstUI CGCG 2 cut(s) 61, 533
BstX2I RGATCY 3 cut(s) 242, 777, 1105
BstXI CCANNNNNNTGG 2 cut(s) 157, 1028
BstYI RGATCY 3 cut(s) 242, 777, 1105
Bsu15I ATCGAT 1 cut(s) 468
BsuRI GGCC 6 cut(s) 50, 161, 206, 357, 753, 1163
BsuTUI ATCGAT 1 cut(s) 468
BtgI CCRYGG 2 cut(s) 32, 565
BtgZI GCGATG 1 cut(s) 963
BtsCI GGATG 5 cut(s) 12, 381, 753, 916, 1069
BtsI GCAGTG 1 cut(s) 931
BtsIMutI CAGTG 2 cut(s) 931, 1302
BveI ACCTGC 1 cut(s) 730
Cac8I GCNNGC 7 cut(s) 134, 163, 195, 572, 688, 721, 725
Cfr10I RCCGGY 2 cut(s) 161, 193
Cfr13I GGNCC 5 cut(s) 49, 251, 751, 752, 1241
ClaI ATCGAT 1 cut(s) 468
CseI GACGC 1 cut(s) 413
Csp6I GTAC 6 cut(s) 584, 649, 703, 708, 1025, 1145
CspCI CAANNNNNGTGG 4 cut(s) 813, 848, 1037, 1072
CviAII CATG 8 cut(s) 33, 53, 540, 679, 728, 821, 1022, 1198
CviQI GTAC 6 cut(s) 584, 649, 703, 708, 1025, 1145
DdeI CTNAG 3 cut(s) 339, 1251, 1266
DraIII CACNNNGTG 2 cut(s) 571, 637
EaeI YGGCCR 3 cut(s) 159, 204, 1161
Eam1104I CTCTTC 1 cut(s) 657
EarI CTCTTC 1 cut(s) 657
EciI GGCGGA 2 cut(s) 212, 785
Eco130I CCWWGG 4 cut(s) 32, 711, 828, 1210
Eco147I AGGCCT 1 cut(s) 357
Eco24I GRGCYC 1 cut(s) 755
Eco47I GGWCC 2 cut(s) 251, 1241
Eco57I CTGAAG 1 cut(s) 1097
Eco72I CACGTG 1 cut(s) 634
EcoRII CCWGG 4 cut(s) 149, 991, 1027, 1078
EcoT14I CCWWGG 4 cut(s) 32, 711, 828, 1210
EcoT38I GRGCYC 1 cut(s) 755
ErhI CCWWGG 4 cut(s) 32, 711, 828, 1210
Esp3I CGTCTC 1 cut(s) 587
FaeI CATG 8 cut(s) 36, 56, 543, 682, 731, 824, 1025, 1201
FaqI GGGAC 1 cut(s) 1344
FatI CATG 8 cut(s) 32, 52, 539, 678, 727, 820, 1021, 1197
FauI CCCGC 3 cut(s) 73, 179, 241
Fnu4HI GCNGC 6 cut(s) 127, 130, 279, 450, 531, 717
FokI GGATG 5 cut(s) 19, 368, 760, 923, 1076
FriOI GRGCYC 1 cut(s) 755
Fsp4HI GCNGC 6 cut(s) 127, 130, 279, 450, 531, 717
FspBI CTAG 2 cut(s) 1334, 1381
GluI GCNGC 6 cut(s) 127, 130, 279, 450, 531, 717
GsuI CTGGAG 1 cut(s) 1101
HaeIII GGCC 6 cut(s) 50, 161, 206, 357, 753, 1163
HapII CCGG 8 cut(s) 77, 114, 162, 194, 207, 369, 782, 882
HgaI GACGC 1 cut(s) 413
Hin1I GRCGYC 1 cut(s) 405
Hin1II CATG 8 cut(s) 36, 56, 543, 682, 731, 824, 1025, 1201
HinfI GANTC 4 cut(s) 335, 365, 731, 1178
HpaII CCGG 8 cut(s) 77, 114, 162, 194, 207, 369, 782, 882
HphI GGTGA 4 cut(s) 21, 649, 848, 931
Hpy166II GTNNAC 2 cut(s) 400, 1241
Hpy188I TCNGA 9 cut(s) 255, 364, 421, 478, 766, 862, 910, 1116, 1267
Hpy188III TCNNGA 5 cut(s) 236, 297, 620, 745, 1182
Hpy8I GTNNAC 2 cut(s) 400, 1241
Hpy99I CGWCG 2 cut(s) 335, 407
HpyAV CCTTC 8 cut(s) 35, 233, 272, 307, 595, 634, 857, 1168
HpyCH4III ACNGT 7 cut(s) 500, 707, 844, 967, 1006, 1238, 1297
HpyCH4IV ACGT 3 cut(s) 596, 633, 902
HpyCH4V TGCA 8 cut(s) 56, 290, 739, 792, 824, 1015, 1036, 1300
HpyF10VI GCNNNNNNNGC 6 cut(s) 123, 138, 203, 287, 611, 1042
HpyF3I CTNAG 3 cut(s) 339, 1251, 1266
HpySE526I ACGT 3 cut(s) 596, 633, 902
Hsp92I GRCGYC 1 cut(s) 405
Hsp92II CATG 8 cut(s) 36, 56, 543, 682, 731, 824, 1025, 1201
KroI GCCGGC 2 cut(s) 161, 193
KroNI GCCGGC 2 cut(s) 163, 195
LmnI GCTCC 2 cut(s) 123, 895
LweI GCATC 5 cut(s) 277, 381, 684, 901, 1054
MaeI CTAG 2 cut(s) 1334, 1381
MaeII ACGT 3 cut(s) 596, 633, 902
MaeIII GTNAC 3 cut(s) 490, 1000, 1232
MbiI CCGCTC 1 cut(s) 126
MboII GAAGA 9 cut(s) 225, 228, 268, 385, 541, 674, 1100, 1103, 1238
MflI RGATCY 3 cut(s) 242, 777, 1105
MhlI GDGCHC 4 cut(s) 177, 576, 755, 933
MlsI TGGCCA 1 cut(s) 1163
MluCI AATT 6 cut(s) 326, 389, 507, 1185, 1288, 1315
MluNI TGGCCA 1 cut(s) 1163
MlyI GAGTC 2 cut(s) 344, 725
MmeI TCCRAC 2 cut(s) 444, 855
Mox20I TGGCCA 1 cut(s) 1163
MreI CGCCGGCG 1 cut(s) 193
MroNI GCCGGC 2 cut(s) 161, 193
MroXI GAANNNNTTC 1 cut(s) 326
MscI TGGCCA 1 cut(s) 1163
MseI TTAA 1 cut(s) 351
MslI CAYNNNNRTG 2 cut(s) 34, 1050
Msp20I TGGCCA 1 cut(s) 1163
MspI CCGG 8 cut(s) 77, 114, 162, 194, 207, 369, 782, 882
MspR9I CCNGG 6 cut(s) 151, 782, 883, 993, 1029, 1080
MvaI CCWGG 4 cut(s) 151, 993, 1029, 1080
MvnI CGCG 2 cut(s) 61, 533
MwoI GCNNNNNNNGC 6 cut(s) 123, 138, 203, 287, 611, 1042
NaeI GCCGGC 2 cut(s) 163, 195
NciI CCSGG 2 cut(s) 782, 883
NcoI CCATGG 1 cut(s) 32
NgoMIV GCCGGC 2 cut(s) 161, 193
NlaIII CATG 8 cut(s) 36, 56, 543, 682, 731, 824, 1025, 1201
NlaIV GGNNCC 3 cut(s) 148, 252, 753
NmuCI GTSAC 1 cut(s) 1000
OliI CACNNNNGTG 1 cut(s) 34
PceI AGGCCT 1 cut(s) 357
PcsI WCGNNNNNNNCGW 1 cut(s) 573
PdiI GCCGGC 2 cut(s) 163, 195
PdmI GAANNNNTTC 1 cut(s) 326
PfeI GAWTC 2 cut(s) 365, 1178
PflMI CCANNNNNTGG 1 cut(s) 1170
PfoI TCCNGGA 1 cut(s) 780
PkrI GCNGC 6 cut(s) 128, 131, 280, 451, 532, 718
PleI GAGTC 2 cut(s) 343, 725
PmaCI CACGTG 1 cut(s) 634
PmlI CACGTG 1 cut(s) 634
PpsI GAGTC 2 cut(s) 343, 725
Ppu21I YACGTR 1 cut(s) 634
Psp6I CCWGG 4 cut(s) 149, 991, 1027, 1078
PspCI CACGTG 1 cut(s) 634
PspGI CCWGG 4 cut(s) 149, 991, 1027, 1078
PspN4I GGNNCC 3 cut(s) 148, 252, 753
PspOMI GGGCCC 1 cut(s) 751
PspPI GGNCC 5 cut(s) 49, 251, 751, 752, 1241
PsuI RGATCY 3 cut(s) 242, 777, 1105
RsaI GTAC 6 cut(s) 585, 650, 704, 709, 1026, 1146
RsaNI GTAC 6 cut(s) 584, 649, 703, 708, 1025, 1145
RseI CAYNNNNRTG 2 cut(s) 34, 1050
SaqAI TTAA 1 cut(s) 351
SatI GCNGC 6 cut(s) 127, 130, 279, 450, 531, 717
Sau96I GGNCC 5 cut(s) 49, 251, 751, 752, 1241
ScaI AGTACT 1 cut(s) 650
SchI GAGTC 2 cut(s) 344, 725
ScrFI CCNGG 6 cut(s) 151, 782, 883, 993, 1029, 1080
SduI GDGCHC 4 cut(s) 177, 576, 755, 933
SfaNI GCATC 5 cut(s) 277, 381, 684, 901, 1054
SfcI CTRYAG 2 cut(s) 118, 1321
SgrAI CRCCGGYG 1 cut(s) 193
SinI GGWCC 2 cut(s) 251, 1241
SmiMI CAYNNNNRTG 2 cut(s) 34, 1050
Sse9I AATT 6 cut(s) 326, 389, 507, 1185, 1288, 1315
SseBI AGGCCT 1 cut(s) 357
SspMI CTAG 2 cut(s) 1334, 1381
StuI AGGCCT 1 cut(s) 357
StyD4I CCNGG 6 cut(s) 149, 780, 881, 991, 1027, 1078
StyI CCWWGG 4 cut(s) 32, 711, 828, 1210
TaaI ACNGT 7 cut(s) 500, 707, 844, 967, 1006, 1238, 1297
TaiI ACGT 3 cut(s) 599, 636, 905
TaqI TCGA 8 cut(s) 109, 171, 235, 330, 468, 588, 1190, 1220
TaqII GACCGA 1 cut(s) 321
TasI AATT 6 cut(s) 326, 389, 507, 1185, 1288, 1315
TatI WGTACW 1 cut(s) 648
TauI GCSGC 6 cut(s) 129, 132, 281, 452, 533, 719
TfiI GAWTC 2 cut(s) 365, 1178
Tru1I TTAA 1 cut(s) 351
Tru9I TTAA 1 cut(s) 351
TscAI CASTG 2 cut(s) 938, 1302
TseFI GTSAC 1 cut(s) 1000
Tsp45I GTSAC 1 cut(s) 1000
TspDTI ATGAA 2 cut(s) 254, 809
TspRI CASTG 2 cut(s) 938, 1302
Van91I CCANNNNNTGG 1 cut(s) 1170
VpaK11BI GGWCC 2 cut(s) 251, 1241
XapI RAATTY 2 cut(s) 1185, 1315
XmnI GAANNNNTTC 1 cut(s) 326
XspI CTAG 2 cut(s) 1334, 1381
ZrmI AGTACT 1 cut(s) 650
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.