Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0006415

Physical Location & Seq

Genomic Coordinates Reverse (-)

29990798 .. 29993072

Gene Structure 2275 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023917

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGGCCATAGCTGTTAGTGCAACTTCTTCAGCCTACGACAGGATGAAGGAGGTGAAAGAGTTCGACGAGTCAAATATCGGAGTTAAAGGCCTCTCCGACTCCAGCATCACTTCCATCACCCGATTCTTTGTCCACGACCCCCAAACCTTCTTCGACCTCAAACCCTCGTCCAAACGCACCGTCCCCGCCACGCTCCCCACCATCGACCTTTCTCACATCAACTCGGTTAATCTCCACCCTGAAATCGTTGAACAGATCAGAGACGCCGCTAGGACATGGGGATTCTTCCAAGTGATCAACCACGGCATACCCGTCTCCGTAGTAGATCAGACGCTGAACGCCATCAAAGCATTTCACGAGCAGCCCCACGAGGTGAAGGCCAAGTTCTACAAGCGAGAAGAGGGGAAGGGCTTCATGTACGCCAGCAACAATGATTTGTACCGCACAAAGGCGGCCAGCTGGCACGACTCGTTTAACTTGTGGACGGGCCCGGAGCCACCGGAGGTGGAGGAGCTTCCGGAGGTCTGTAGAAATGAGGTGGTTGCATGGGATTTCCATGCAACCAAGAGTGTGATGGAGTTGCTTTCCGAAGGGTTAGGGTTAGAAGCTGGCAAGTTCAAGGAGCTTACGTTTTCGGAGAAGAGGGCGCTTGTTGGACACTGCTATCCCTACTGTCCTCAGCCCGATCGGACGGTGGGGATTACGTCGCATACAGATCCTGGGATAGTGACAGTTCTGTTGCAAAACCATGTGCCTGGGTTGCAAGTTAGGCATGAGGATGAGTGGGTGGACGTCAAGGCTATTCCTGGAGGTCTGATTATTAATGTTGGAGACACGCTTCAGATAATCTCTAATGGGGAGTACAAAAGTGTGCAACATCGTGTGTTGGCAAACTCTTGGAAGGAAGCTCGAATTTCAATTGTGATATTTTACAACCTAGCCAAATGGAATGAAGATGGATACTGTGGACCTCTCCCAGAACTTTTGTTACCTGAGAAGCCACCAATCTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

338

Amino Acids

37.9

Weight (kDa)

5.64

Isoelectric Point (pI)

37.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	65 - 164	9.7e-22	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	217 - 312	7.1e-29	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006415)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g19280 FvH4_6g19280 FvH4_6g19281
malus_domestica	MD12G1028400.v1.1 MD12G1028500.v1.1 MD14G1028700.v1.1
prunus_persica	Prupe.7G102900_v2.0.a1 Prupe.7G103000_v2.0.a1
pyrus_communis	pycom12g02720 pycom12g02730 pycom14g02670 pycom14g02680
rosa_chinensis	RchiOBHm_Chr3g0474491
rosa_laevigata	RLG00000023917 RLG00000023927 RLG00000023928
rosa_multiflora	Rmu_sc0001353.1_g000045 Rmu_sc0039676.1_g000001
rosa_roxburghii	Rroxscaffold_6G00407120 Rroxscaffold_6G00407300
rosa_rugosa	Rorug03G0140600 Rorug03G0141100
rosa_samantha	Rh3AG192000 Rh3BG221500 Rh3CG216200 Rh3DG216900
rosa_wichuraiana	Rw3G017450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	795
AccIII	TCCGGA	1 cut(s)	517
AciI	CCGC	4 cut(s)	186, 267, 442, 452
AclWI	GGATC	1 cut(s)	710
AcoI	YGGCCR	2 cut(s)	3, 453
AcsI	RAATTY	1 cut(s)	912
AcuI	CTGAAG	2 cut(s)	12, 824
AcyI	GRCGYC	2 cut(s)	264, 792
AdeI	CACNNNGTG	1 cut(s)	373
AfaI	GTAC	3 cut(s)	419, 440, 863
AfiI	CCNNNNNNNGG	2 cut(s)	39, 448
AgsI	TTSAA	3 cut(s)	251, 619, 918
AjnI	CCWGG	3 cut(s)	718, 754, 805
AluBI	AGCT	6 cut(s)	11, 459, 514, 608, 625, 908
AluI	AGCT	6 cut(s)	11, 459, 514, 608, 625, 908
Alw26I	GTCTC	3 cut(s)	255, 319, 825
AlwI	GGATC	1 cut(s)	710
AlwNI	CAGNNNCTG	2 cut(s)	334, 719
Aor13HI	TCCGGA	1 cut(s)	517
AoxI	GGCC	5 cut(s)	3, 88, 378, 453, 487
ApaI	GGGCCC	1 cut(s)	491
ApeKI	GCWGC	1 cut(s)	361
ApoI	RAATTY	1 cut(s)	912
ArsI	GACNNNNNNTTYG	2 cut(s)	165, 197
AseI	ATTAAT	1 cut(s)	822
Asp700I	GAANNNNTTC	2 cut(s)	59, 410
AspLEI	GCGC	1 cut(s)	649
AspS9I	GGNCC	3 cut(s)	487, 488, 968
AsuC2I	CCSGG	1 cut(s)	491
AsuHPI	GGTGA	3 cut(s)	64, 109, 385
AvaII	GGWCC	1 cut(s)	968
BaeGI	GKGCMC	1 cut(s)	491
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	491
BauI	CACGAG	2 cut(s)	356, 368
BbvCI	CCTCAGC	1 cut(s)	678
BbvI	GCAGC	1 cut(s)	373
BccI	CCATC	5 cut(s)	122, 209, 350, 568, 950
BceAI	ACGGC	1 cut(s)	319
BciT130I	CCWGG	3 cut(s)	720, 756, 807
BciVI	GTATCC	1 cut(s)	953
BclI	TGATCA	1 cut(s)	294
BcnI	CCSGG	1 cut(s)	491
BcoDI	GTCTC	3 cut(s)	255, 319, 825
BfaI	CTAG	2 cut(s)	270, 938
BfmI	CTRYAG	1 cut(s)	526
BfoI	RGCGCY	1 cut(s)	650
BfuI	GTATCC	1 cut(s)	953
BisI	GCNGC	3 cut(s)	267, 362, 453
BlsI	GCNGC	3 cut(s)	268, 363, 454
Bme1390I	CCNGG	4 cut(s)	491, 720, 756, 807
Bme18I	GGWCC	1 cut(s)	968
BmgT120I	GGNCC	3 cut(s)	487, 488, 968
BmiI	GGNNCC	2 cut(s)	489, 495
BmrFI	CCNGG	4 cut(s)	491, 720, 756, 807
BmsI	GCATC	1 cut(s)	114
BpmI	CTGGAG	2 cut(s)	85, 828
Bpu10I	CCTNAGC	1 cut(s)	678
BpuMI	CCSGG	1 cut(s)	491
BsaHI	GRCGYC	2 cut(s)	264, 792
BsaJI	CCNNGG	3 cut(s)	301, 719, 755
BsaWI	WCCGGW	2 cut(s)	499, 517
BsaXI	ACNNNNNCTCC	2 cut(s)	614, 644
Bsc4I	CCNNNNNNNGG	2 cut(s)	39, 448
BseAI	TCCGGA	1 cut(s)	517
BseBI	CCWGG	3 cut(s)	720, 756, 807
BseDI	CCNNGG	3 cut(s)	301, 719, 755
BseGI	GGATG	2 cut(s)	48, 784
BseLI	CCNNNNNNNGG	2 cut(s)	39, 448
BseMII	CTCAG	2 cut(s)	692, 984
BseRI	GAGGAG	1 cut(s)	524
BseSI	GKGCMC	1 cut(s)	491
BseXI	GCAGC	1 cut(s)	373
Bsh1285I	CGRYCG	1 cut(s)	688
BshFI	GGCC	5 cut(s)	5, 90, 380, 455, 489
BsiEI	CGRYCG	1 cut(s)	688
BsiSI	CCGG	3 cut(s)	491, 500, 518
BslFI	GGGAC	1 cut(s)	167
BslI	CCNNNNNNNGG	2 cut(s)	39, 448
BsmAI	GTCTC	3 cut(s)	255, 319, 825
BsmBI	CGTCTC	2 cut(s)	255, 319
BsmFI	GGGAC	1 cut(s)	167
BsnI	GGCC	5 cut(s)	5, 90, 380, 455, 489
Bsp120I	GGGCCC	1 cut(s)	487
Bsp1286I	GDGCHC	1 cut(s)	491
Bsp13I	TCCGGA	1 cut(s)	517
Bsp143I	GATC	5 cut(s)	255, 294, 325, 685, 715
BspACI	CCGC	4 cut(s)	186, 267, 442, 452
BspANI	GGCC	5 cut(s)	5, 90, 380, 455, 489
BspCNI	CTCAG	2 cut(s)	691, 985
BspEI	TCCGGA	1 cut(s)	517
BspLI	GGNNCC	2 cut(s)	489, 495
BspPI	GGATC	1 cut(s)	710
BssECI	CCNNGG	3 cut(s)	301, 719, 755
BssMI	GATC	5 cut(s)	255, 294, 325, 685, 715
BssNI	GRCGYC	2 cut(s)	264, 792
BssSI	CACGAG	2 cut(s)	356, 368
Bst2BI	CACGAG	2 cut(s)	356, 368
Bst2UI	CCWGG	3 cut(s)	720, 756, 807
Bst4CI	ACNGT	5 cut(s)	181, 674, 694, 733, 965
Bst6I	CTCTTC	2 cut(s)	393, 635
BstACI	GRCGYC	2 cut(s)	264, 792
BstC8I	GCNNGC	4 cut(s)	424, 457, 461, 610
BstDEI	CTNAG	2 cut(s)	678, 993
BstDSI	CCRYGG	1 cut(s)	301
BstENI	CCTNNNNNAGG	1 cut(s)	37
BstF5I	GGATG	2 cut(s)	48, 784
BstH2I	RGCGCY	1 cut(s)	650
BstHHI	GCGC	1 cut(s)	649
BstKTI	GATC	5 cut(s)	258, 297, 328, 688, 718
BstMAI	GTCTC	3 cut(s)	255, 319, 825
BstMBI	GATC	5 cut(s)	255, 294, 325, 685, 715
BstMCI	CGRYCG	1 cut(s)	688
BstMWI	GCNNNNNNNGC	4 cut(s)	17, 347, 760, 769
BstNI	CCWGG	3 cut(s)	720, 756, 807
BstSCI	CCNGG	4 cut(s)	489, 718, 754, 805
BstSFI	CTRYAG	1 cut(s)	526
BstSLI	GKGCMC	1 cut(s)	491
BstV1I	GCAGC	1 cut(s)	373
BstX2I	RGATCY	1 cut(s)	715
BstXI	CCANNNNNNTGG	1 cut(s)	755
BstYI	RGATCY	1 cut(s)	715
BsuI	GTATCC	1 cut(s)	953
BsuRI	GGCC	5 cut(s)	5, 90, 380, 455, 489
BtgI	CCRYGG	1 cut(s)	301
BtsCI	GGATG	2 cut(s)	48, 784
BtsI	GCAGTG	1 cut(s)	658
BtsIMutI	CAGTG	1 cut(s)	658
Cac8I	GCNNGC	4 cut(s)	424, 457, 461, 610
CaiI	CAGNNNCTG	2 cut(s)	334, 719
CfoI	GCGC	1 cut(s)	649
Cfr13I	GGNCC	3 cut(s)	487, 488, 968
CseI	GACGC	2 cut(s)	272, 340
Csp6I	GTAC	3 cut(s)	418, 439, 862
CviAII	CATG	6 cut(s)	276, 415, 546, 557, 749, 773
CviQI	GTAC	3 cut(s)	418, 439, 862
DdeI	CTNAG	2 cut(s)	678, 993
DpnI	GATC	5 cut(s)	257, 296, 327, 687, 717
DpnII	GATC	5 cut(s)	255, 294, 325, 685, 715
DraIII	CACNNNGTG	1 cut(s)	373
EaeI	YGGCCR	2 cut(s)	3, 453
Eam1104I	CTCTTC	2 cut(s)	393, 635
EarI	CTCTTC	2 cut(s)	393, 635
Eco147I	AGGCCT	1 cut(s)	90
Eco24I	GRGCYC	1 cut(s)	491
Eco47I	GGWCC	1 cut(s)	968
Eco57I	CTGAAG	2 cut(s)	12, 824
EcoNI	CCTNNNNNAGG	1 cut(s)	37
EcoRII	CCWGG	3 cut(s)	718, 754, 805
EcoT38I	GRGCYC	1 cut(s)	491
Esp3I	CGTCTC	2 cut(s)	255, 319
FaeI	CATG	6 cut(s)	279, 418, 549, 560, 752, 776
FaiI	YATR	9 cut(s)	8, 277, 308, 416, 547, 558, 711, 750, 774
FaqI	GGGAC	1 cut(s)	167
FatI	CATG	6 cut(s)	275, 414, 545, 556, 748, 772
FauI	CCCGC	1 cut(s)	193
FbaI	TGATCA	1 cut(s)	294
Fnu4HI	GCNGC	3 cut(s)	267, 362, 453
FokI	GGATG	2 cut(s)	55, 791
FriOI	GRGCYC	1 cut(s)	491
Fsp4HI	GCNGC	3 cut(s)	267, 362, 453
FspBI	CTAG	2 cut(s)	270, 938
GlaI	GCGC	1 cut(s)	648
GluI	GCNGC	3 cut(s)	267, 362, 453
GsuI	CTGGAG	2 cut(s)	85, 828
HaeII	RGCGCY	1 cut(s)	650
HaeIII	GGCC	5 cut(s)	5, 90, 380, 455, 489
HapII	CCGG	3 cut(s)	491, 500, 518
HgaI	GACGC	2 cut(s)	272, 340
HhaI	GCGC	1 cut(s)	649
Hin1I	GRCGYC	2 cut(s)	264, 792
Hin1II	CATG	6 cut(s)	279, 418, 549, 560, 752, 776
Hin6I	GCGC	1 cut(s)	647
HinP1I	GCGC	1 cut(s)	647
HinfI	GANTC	5 cut(s)	68, 98, 123, 282, 467
HpaII	CCGG	3 cut(s)	491, 500, 518
HphI	GGTGA	3 cut(s)	64, 109, 385
Hpy166II	GTNNAC	4 cut(s)	133, 483, 790, 968
Hpy188I	TCNGA	9 cut(s)	80, 97, 260, 330, 589, 637, 690, 816, 843
Hpy188III	TCNNGA	2 cut(s)	356, 518
Hpy8I	GTNNAC	4 cut(s)	133, 483, 790, 968
Hpy99I	CGWCG	2 cut(s)	68, 709
HpyAV	CCTTC	6 cut(s)	40, 157, 370, 400, 584, 895
HpyCH4III	ACNGT	5 cut(s)	181, 674, 694, 733, 965
HpyCH4IV	ACGT	3 cut(s)	629, 704, 792
HpyCH4V	TGCA	6 cut(s)	20, 545, 560, 742, 763, 874
HpyF10VI	GCNNNNNNNGC	4 cut(s)	17, 347, 760, 769
HpyF3I	CTNAG	2 cut(s)	678, 993
HpySE526I	ACGT	3 cut(s)	629, 704, 792
Hsp92I	GRCGYC	2 cut(s)	264, 792
Hsp92II	CATG	6 cut(s)	279, 418, 549, 560, 752, 776
HspAI	GCGC	1 cut(s)	647
Kpn2I	TCCGGA	1 cut(s)	517
Ksp22I	TGATCA	1 cut(s)	294
Kzo9I	GATC	5 cut(s)	255, 294, 325, 685, 715
LmnI	GCTCC	4 cut(s)	198, 493, 511, 622
Lsp1109I	GCAGC	1 cut(s)	373
LweI	GCATC	1 cut(s)	114
MaeI	CTAG	2 cut(s)	270, 938
MaeII	ACGT	3 cut(s)	629, 704, 792
MaeIII	GTNAC	2 cut(s)	727, 987
MalI	GATC	5 cut(s)	257, 296, 327, 687, 717
MboI	GATC	5 cut(s)	255, 294, 325, 685, 715
MboII	GAAGA	6 cut(s)	18, 142, 277, 410, 652, 965
MfeI	CAATTG	1 cut(s)	918
MflI	RGATCY	1 cut(s)	715
MhlI	GDGCHC	1 cut(s)	491
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	912, 918
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	3 cut(s)	77, 92, 461
MmeI	TCCRAC	3 cut(s)	120, 634, 808
Mox20I	TGGCCA	1 cut(s)	5
MroI	TCCGGA	1 cut(s)	517
MroXI	GAANNNNTTC	2 cut(s)	59, 410
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	4 cut(s)	84, 228, 474, 822
MslI	CAYNNNNRTG	1 cut(s)	777
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	459
MspI	CCGG	3 cut(s)	491, 500, 518
MspR9I	CCNGG	4 cut(s)	491, 720, 756, 807
MunI	CAATTG	1 cut(s)	918
MvaI	CCWGG	3 cut(s)	720, 756, 807
MwoI	GCNNNNNNNGC	4 cut(s)	17, 347, 760, 769
NciI	CCSGG	1 cut(s)	491
NdeII	GATC	5 cut(s)	255, 294, 325, 685, 715
NlaIII	CATG	6 cut(s)	279, 418, 549, 560, 752, 776
NlaIV	GGNNCC	2 cut(s)	489, 495
NmuCI	GTSAC	1 cut(s)	727
PceI	AGGCCT	1 cut(s)	90
PcsI	WCGNNNNNNNCGW	1 cut(s)	309
PdmI	GAANNNNTTC	2 cut(s)	59, 410
PfeI	GAWTC	2 cut(s)	123, 282
PfoI	TCCNGGA	1 cut(s)	805
PkrI	GCNGC	3 cut(s)	268, 363, 454
Ple19I	CGATCG	1 cut(s)	688
PleI	GAGTC	3 cut(s)	76, 92, 461
PpsI	GAGTC	3 cut(s)	76, 92, 461
PshBI	ATTAAT	1 cut(s)	822
Psp6I	CCWGG	3 cut(s)	718, 754, 805
PspGI	CCWGG	3 cut(s)	718, 754, 805
PspN4I	GGNNCC	2 cut(s)	489, 495
PspOMI	GGGCCC	1 cut(s)	487
PspPI	GGNCC	3 cut(s)	487, 488, 968
PsrI	GAACNNNNNNTAC	2 cut(s)	972, 1004
PstNI	CAGNNNCTG	2 cut(s)	334, 719
PsuI	RGATCY	1 cut(s)	715
PvuI	CGATCG	1 cut(s)	688
PvuII	CAGCTG	1 cut(s)	459
RsaI	GTAC	3 cut(s)	419, 440, 863
RsaNI	GTAC	3 cut(s)	418, 439, 862
RseI	CAYNNNNRTG	1 cut(s)	777
SaqAI	TTAA	4 cut(s)	84, 228, 474, 822
SatI	GCNGC	3 cut(s)	267, 362, 453
Sau3AI	GATC	5 cut(s)	255, 294, 325, 685, 715
Sau96I	GGNCC	3 cut(s)	487, 488, 968
SchI	GAGTC	3 cut(s)	77, 92, 461
ScrFI	CCNGG	4 cut(s)	491, 720, 756, 807
SduI	GDGCHC	1 cut(s)	491
SfaNI	GCATC	1 cut(s)	114
SfcI	CTRYAG	1 cut(s)	526
SinI	GGWCC	1 cut(s)	968
SmiMI	CAYNNNNRTG	1 cut(s)	777
Sse9I	AATT	2 cut(s)	912, 918
SseBI	AGGCCT	1 cut(s)	90
SsiI	CCGC	4 cut(s)	186, 267, 442, 452
SspMI	CTAG	2 cut(s)	270, 938
StuI	AGGCCT	1 cut(s)	90
StyD4I	CCNGG	4 cut(s)	489, 718, 754, 805
TaaI	ACNGT	5 cut(s)	181, 674, 694, 733, 965
TaiI	ACGT	3 cut(s)	632, 707, 795
TaqI	TCGA	4 cut(s)	63, 153, 204, 910
TasI	AATT	2 cut(s)	912, 918
TatI	WGTACW	1 cut(s)	861
TauI	GCSGC	2 cut(s)	269, 455
TfiI	GAWTC	2 cut(s)	123, 282
Tru1I	TTAA	4 cut(s)	84, 228, 474, 822
Tru9I	TTAA	4 cut(s)	84, 228, 474, 822
TscAI	CASTG	1 cut(s)	665
TseFI	GTSAC	1 cut(s)	727
TseI	GCWGC	1 cut(s)	361
Tsp45I	GTSAC	1 cut(s)	727
TspDTI	ATGAA	3 cut(s)	59, 403, 966
TspGWI	ACGGA	1 cut(s)	307
TspRI	CASTG	1 cut(s)	665
VpaK11BI	GGWCC	1 cut(s)	968
VspI	ATTAAT	1 cut(s)	822
XagI	CCTNNNNNAGG	1 cut(s)	37
XapI	RAATTY	1 cut(s)	912
XcmI	CCANNNNNNNNNTGG	1 cut(s)	571
XmnI	GAANNNNTTC	2 cut(s)	59, 410
XspI	CTAG	2 cut(s)	270, 938
ZraI	GACGTC	1 cut(s)	793

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.