Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0006415

Physical Location & Seq

Genomic Coordinates Forward (+)

12782481 .. 12783998

Gene Structure 1518 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g19281.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGGCAGCCGCTGTTGGTGCAACTTCTTCAACCTATGACCGGATGAAGGAAGTGAAAGAGTTCGACGAGTCAAAGATGGGAGTTAAAGGCCTCTCCGATTCCGGCATCACTTCTATCCCTCAATTCTTTGTCCACGATCCCCAAACGCTCTCCGACCTCAAACCCTCGTCCAAACGCACCGTCCCCGCAACGCTCCCCACCATCGACCTTACTCGCATCAACTCGGCCAATCACCGCCCTGAAATCGTTGACCAGATCAAAGACGCCGCCAAGACATGGGGCTTCTTCCAAGTGATCAACCACGGCATACCCGTCTCGGTAGTAGATCAGACGGTGAACGCCGTCAGAGCGTTTCACGAGCAGCCCCACGAGGTGAAGGCCAAGTTCTACAAGCGAGAAGAGGGGAAGGGCTTCATGTACGCTAGCAACAATGACTTGTACCGCACAACGGCGGCCAGCTGGCACGACTCGTTTAGTGTTTGGACCGGGCCGGAGCCACCGGAGCTGGAGGAGCTTCCGGAGGTATGTAGAAATGAGGTGGTAGCATGGGATTTGCATGCAACCAAGGTGGCTGAGAGTGTGATGGAGTTGCTTTCAGAAGGGTTAGGATTGGAAGCTGGCAAATTCAAGGAGCTTACGTTTTCGGAGAAGAGGGCGCTTGTGGGGCACTGCTATCCCTACTGTCCTCAACCTGACCGGACTGTGGGAATTAAGTCGCATACTGATCCTGGGATAGTGACAGTTCTGTTGCAGAACGATGTGCCTGGGTTGCAAGTTAGGCATGAGGATGACTGGGTGGACGTTAAGCCTCTTCCTGGAGGTCTGATCATTAACGTTGGAGACATGCTTCAGGTATATTATAAATACAGTTTACTAATTAACAATCATTCACTAAGAGATTATATGTTGGTAATAATCAATCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

309

Amino Acids

34.49

Weight (kDa)

5.67

Isoelectric Point (pI)

35.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	65 - 163	3.9e-21	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	220 - 288	5.7e-19	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006415)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g19280 FvH4_6g19280 FvH4_6g19281
malus_domestica	MD12G1028400.v1.1 MD12G1028500.v1.1 MD14G1028700.v1.1
prunus_persica	Prupe.7G102900_v2.0.a1 Prupe.7G103000_v2.0.a1
pyrus_communis	pycom12g02720 pycom12g02730 pycom14g02670 pycom14g02680
rosa_chinensis	RchiOBHm_Chr3g0474491
rosa_laevigata	RLG00000023917 RLG00000023927 RLG00000023928
rosa_multiflora	Rmu_sc0001353.1_g000045 Rmu_sc0039676.1_g000001
rosa_roxburghii	Rroxscaffold_6G00407120 Rroxscaffold_6G00407300
rosa_rugosa	Rorug03G0140600 Rorug03G0141100
rosa_samantha	Rh3AG192000 Rh3BG221500 Rh3CG216200 Rh3DG216900
rosa_wichuraiana	Rw3G017450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	861
AccB7I	CCANNNNNTGG	1 cut(s)	276
AccIII	TCCGGA	1 cut(s)	517
AciI	CCGC	6 cut(s)	9, 186, 235, 267, 442, 452
AclI	AACGTT	1 cut(s)	834
AclWI	GGATC	2 cut(s)	131, 719
AcoI	YGGCCR	2 cut(s)	225, 453
AcsI	RAATTY	1 cut(s)	623
AcuI	CTGAAG	1 cut(s)	833
AcyI	GRCGYC	1 cut(s)	264
AdeI	CACNNNGTG	1 cut(s)	373
AfaI	GTAC	2 cut(s)	419, 440
AfiI	CCNNNNNNNGG	6 cut(s)	39, 46, 276, 448, 703, 815
AgsI	TTSAA	2 cut(s)	30, 628
AjnI	CCWGG	3 cut(s)	727, 763, 814
AluBI	AGCT	5 cut(s)	459, 505, 514, 617, 634
AluI	AGCT	5 cut(s)	459, 505, 514, 617, 634
Alw26I	GTCTC	2 cut(s)	319, 834
AlwI	GGATC	2 cut(s)	131, 719
AlwNI	CAGNNNCTG	1 cut(s)	11
Aor13HI	TCCGGA	1 cut(s)	517
AoxI	GGCC	5 cut(s)	88, 225, 378, 453, 488
ApeKI	GCWGC	2 cut(s)	5, 361
ApoI	RAATTY	1 cut(s)	623
ArsI	GACNNNNNNTTYG	2 cut(s)	165, 197
Asp700I	GAANNNNTTC	2 cut(s)	59, 410
AspLEI	GCGC	1 cut(s)	658
AspS9I	GGNCC	2 cut(s)	483, 488
AsuC2I	CCSGG	1 cut(s)	487
AsuHPI	GGTGA	3 cut(s)	224, 346, 385
AsuNHI	GCTAGC	1 cut(s)	422
AvaII	GGWCC	1 cut(s)	483
BaeGI	GKGCMC	1 cut(s)	669
BauI	CACGAG	2 cut(s)	356, 368
BbvI	GCAGC	2 cut(s)	17, 373
BccI	CCATC	3 cut(s)	70, 209, 577
BceAI	ACGGC	3 cut(s)	319, 326, 465
BciT130I	CCWGG	3 cut(s)	729, 765, 816
BclI	TGATCA	2 cut(s)	294, 825
BcnI	CCSGG	1 cut(s)	487
BcoDI	GTCTC	2 cut(s)	319, 834
BfaI	CTAG	1 cut(s)	423
BfoI	RGCGCY	1 cut(s)	659
BisI	GCNGC	5 cut(s)	6, 9, 267, 362, 453
BlsI	GCNGC	5 cut(s)	7, 10, 268, 363, 454
Bme1390I	CCNGG	4 cut(s)	487, 729, 765, 816
Bme18I	GGWCC	1 cut(s)	483
BmgT120I	GGNCC	2 cut(s)	483, 488
BmiI	GGNNCC	1 cut(s)	495
BmrFI	CCNGG	4 cut(s)	487, 729, 765, 816
BmrI	ACTGGG	1 cut(s)	802
BmsI	GCATC	2 cut(s)	114, 225
BmtI	GCTAGC	1 cut(s)	426
BmuI	ACTGGG	1 cut(s)	802
BpmI	CTGGAG	2 cut(s)	527, 837
BpuMI	CCSGG	1 cut(s)	487
BsaHI	GRCGYC	1 cut(s)	264
BsaJI	CCNNGG	4 cut(s)	301, 564, 728, 764
BsaWI	WCCGGW	4 cut(s)	39, 499, 517, 696
BsaXI	ACNNNNNCTCC	2 cut(s)	623, 653
Bsc4I	CCNNNNNNNGG	6 cut(s)	39, 46, 276, 448, 703, 815
Bse1I	ACTGG	1 cut(s)	797
BseAI	TCCGGA	1 cut(s)	517
BseBI	CCWGG	3 cut(s)	729, 765, 816
BseDI	CCNNGG	4 cut(s)	301, 564, 728, 764
BseGI	GGATG	2 cut(s)	48, 793
BseLI	CCNNNNNNNGG	6 cut(s)	39, 46, 276, 448, 703, 815
BseMII	CTCAG	1 cut(s)	564
BseNI	ACTGG	1 cut(s)	797
BseRI	GAGGAG	1 cut(s)	524
BseSI	GKGCMC	1 cut(s)	669
BseXI	GCAGC	2 cut(s)	17, 373
BshFI	GGCC	5 cut(s)	90, 227, 380, 455, 490
BsiSI	CCGG	7 cut(s)	40, 102, 486, 491, 500, 518, 697
BslFI	GGGAC	1 cut(s)	167
BslI	CCNNNNNNNGG	6 cut(s)	39, 46, 276, 448, 703, 815
BsmAI	GTCTC	2 cut(s)	319, 834
BsmBI	CGTCTC	1 cut(s)	319
BsmFI	GGGAC	1 cut(s)	167
BsnI	GGCC	5 cut(s)	90, 227, 380, 455, 490
Bsp1286I	GDGCHC	1 cut(s)	669
Bsp13I	TCCGGA	1 cut(s)	517
Bsp143I	GATC	6 cut(s)	136, 255, 294, 325, 724, 825
BspACI	CCGC	6 cut(s)	9, 186, 235, 267, 442, 452
BspANI	GGCC	5 cut(s)	90, 227, 380, 455, 490
BspCNI	CTCAG	1 cut(s)	565
BspEI	TCCGGA	1 cut(s)	517
BspLI	GGNNCC	1 cut(s)	495
BspOI	GCTAGC	1 cut(s)	426
BspPI	GGATC	2 cut(s)	131, 719
BsrI	ACTGG	1 cut(s)	797
BssECI	CCNNGG	4 cut(s)	301, 564, 728, 764
BssMI	GATC	6 cut(s)	136, 255, 294, 325, 724, 825
BssNI	GRCGYC	1 cut(s)	264
BssSI	CACGAG	2 cut(s)	356, 368
BssT1I	CCWWGG	1 cut(s)	564
Bst2BI	CACGAG	2 cut(s)	356, 368
Bst2UI	CCWGG	3 cut(s)	729, 765, 816
Bst4CI	ACNGT	6 cut(s)	181, 334, 683, 703, 742, 869
Bst6I	CTCTTC	3 cut(s)	393, 644, 816
BstACI	GRCGYC	1 cut(s)	264
BstC8I	GCNNGC	5 cut(s)	424, 457, 461, 558, 619
BstDEI	CTNAG	2 cut(s)	573, 893
BstDSI	CCRYGG	1 cut(s)	301
BstF5I	GGATG	2 cut(s)	48, 793
BstH2I	RGCGCY	1 cut(s)	659
BstHHI	GCGC	1 cut(s)	658
BstKTI	GATC	6 cut(s)	139, 258, 297, 328, 727, 828
BstMAI	GTCTC	2 cut(s)	319, 834
BstMBI	GATC	6 cut(s)	136, 255, 294, 325, 724, 825
BstMWI	GCNNNNNNNGC	7 cut(s)	17, 347, 502, 511, 664, 769, 778
BstNI	CCWGG	3 cut(s)	729, 765, 816
BstNSI	RCATGY	2 cut(s)	560, 847
BstSCI	CCNGG	4 cut(s)	485, 727, 763, 814
BstSLI	GKGCMC	1 cut(s)	669
BstV1I	GCAGC	2 cut(s)	17, 373
BsuRI	GGCC	5 cut(s)	90, 227, 380, 455, 490
BtgI	CCRYGG	1 cut(s)	301
BtsCI	GGATG	2 cut(s)	48, 793
BtsI	GCAGTG	1 cut(s)	667
BtsIMutI	CAGTG	1 cut(s)	667
Cac8I	GCNNGC	5 cut(s)	424, 457, 461, 558, 619
CaiI	CAGNNNCTG	1 cut(s)	11
CfoI	GCGC	1 cut(s)	658
Cfr13I	GGNCC	2 cut(s)	483, 488
CseI	GACGC	1 cut(s)	272
Csp6I	GTAC	2 cut(s)	418, 439
CspCI	CAANNNNNGTGG	2 cut(s)	549, 584
CviAII	CATG	6 cut(s)	276, 415, 546, 557, 782, 844
CviQI	GTAC	2 cut(s)	418, 439
DdeI	CTNAG	2 cut(s)	573, 893
DpnI	GATC	6 cut(s)	138, 257, 296, 327, 726, 827
DpnII	GATC	6 cut(s)	136, 255, 294, 325, 724, 825
DraIII	CACNNNGTG	1 cut(s)	373
EaeI	YGGCCR	2 cut(s)	225, 453
Eam1104I	CTCTTC	3 cut(s)	393, 644, 816
EarI	CTCTTC	3 cut(s)	393, 644, 816
Eco130I	CCWWGG	1 cut(s)	564
Eco147I	AGGCCT	1 cut(s)	90
Eco47I	GGWCC	1 cut(s)	483
Eco57I	CTGAAG	1 cut(s)	833
EcoRII	CCWGG	3 cut(s)	727, 763, 814
EcoT14I	CCWWGG	1 cut(s)	564
ErhI	CCWWGG	1 cut(s)	564
Esp3I	CGTCTC	1 cut(s)	319
FaeI	CATG	6 cut(s)	279, 418, 549, 560, 785, 847
FaqI	GGGAC	1 cut(s)	167
FatI	CATG	6 cut(s)	275, 414, 545, 556, 781, 843
FauI	CCCGC	1 cut(s)	193
FbaI	TGATCA	2 cut(s)	294, 825
Fnu4HI	GCNGC	5 cut(s)	6, 9, 267, 362, 453
FokI	GGATG	2 cut(s)	55, 800
Fsp4HI	GCNGC	5 cut(s)	6, 9, 267, 362, 453
FspBI	CTAG	1 cut(s)	423
GlaI	GCGC	1 cut(s)	657
GluI	GCNGC	5 cut(s)	6, 9, 267, 362, 453
GsuI	CTGGAG	2 cut(s)	527, 837
HaeII	RGCGCY	1 cut(s)	659
HaeIII	GGCC	5 cut(s)	90, 227, 380, 455, 490
HapII	CCGG	7 cut(s)	40, 102, 486, 491, 500, 518, 697
HgaI	GACGC	1 cut(s)	272
HhaI	GCGC	1 cut(s)	658
Hin1I	GRCGYC	1 cut(s)	264
Hin1II	CATG	6 cut(s)	279, 418, 549, 560, 785, 847
Hin6I	GCGC	1 cut(s)	656
HinP1I	GCGC	1 cut(s)	656
HincII	GTYRAC	1 cut(s)	250
HindII	GTYRAC	1 cut(s)	250
HinfI	GANTC	3 cut(s)	68, 98, 467
HpaII	CCGG	7 cut(s)	40, 102, 486, 491, 500, 518, 697
HphI	GGTGA	3 cut(s)	224, 346, 385
Hpy166II	GTNNAC	5 cut(s)	133, 250, 337, 799, 872
Hpy188I	TCNGA	7 cut(s)	97, 154, 330, 347, 598, 646, 825
Hpy188III	TCNNGA	2 cut(s)	356, 518
Hpy8I	GTNNAC	5 cut(s)	133, 250, 337, 799, 872
Hpy99I	CGWCG	1 cut(s)	68
HpyAV	CCTTC	4 cut(s)	40, 370, 400, 593
HpyCH4III	ACNGT	6 cut(s)	181, 334, 683, 703, 742, 869
HpyCH4IV	ACGT	3 cut(s)	638, 801, 834
HpyCH4V	TGCA	5 cut(s)	20, 556, 560, 751, 772
HpyF10VI	GCNNNNNNNGC	7 cut(s)	17, 347, 502, 511, 664, 769, 778
HpyF3I	CTNAG	2 cut(s)	573, 893
HpySE526I	ACGT	3 cut(s)	638, 801, 834
Hsp92I	GRCGYC	1 cut(s)	264
Hsp92II	CATG	6 cut(s)	279, 418, 549, 560, 785, 847
HspAI	GCGC	1 cut(s)	656
Kpn2I	TCCGGA	1 cut(s)	517
Ksp22I	TGATCA	2 cut(s)	294, 825
Kzo9I	GATC	6 cut(s)	136, 255, 294, 325, 724, 825
LmnI	GCTCC	5 cut(s)	198, 493, 502, 511, 631
Lsp1109I	GCAGC	2 cut(s)	17, 373
LweI	GCATC	2 cut(s)	114, 225
MaeI	CTAG	1 cut(s)	423
MaeII	ACGT	3 cut(s)	638, 801, 834
MaeIII	GTNAC	1 cut(s)	736
MalI	GATC	6 cut(s)	138, 257, 296, 327, 726, 827
MboI	GATC	6 cut(s)	136, 255, 294, 325, 724, 825
MboII	GAAGA	5 cut(s)	18, 277, 410, 661, 803
MhlI	GDGCHC	1 cut(s)	669
MluCI	AATT	4 cut(s)	122, 623, 708, 876
MlyI	GAGTC	2 cut(s)	77, 461
MmeI	TCCRAC	2 cut(s)	177, 817
MroI	TCCGGA	1 cut(s)	517
MroXI	GAANNNNTTC	2 cut(s)	59, 410
MseI	TTAA	5 cut(s)	84, 711, 804, 831, 879
MslI	CAYNNNNRTG	1 cut(s)	786
MspA1I	CMGCKG	2 cut(s)	11, 459
MspI	CCGG	7 cut(s)	40, 102, 486, 491, 500, 518, 697
MspR9I	CCNGG	4 cut(s)	487, 729, 765, 816
MvaI	CCWGG	3 cut(s)	729, 765, 816
MwoI	GCNNNNNNNGC	7 cut(s)	17, 347, 502, 511, 664, 769, 778
NciI	CCSGG	1 cut(s)	487
NdeII	GATC	6 cut(s)	136, 255, 294, 325, 724, 825
NheI	GCTAGC	1 cut(s)	422
NlaIII	CATG	6 cut(s)	279, 418, 549, 560, 785, 847
NlaIV	GGNNCC	1 cut(s)	495
NmeAIII	GCCGAG	1 cut(s)	203
NmuCI	GTSAC	1 cut(s)	736
NspI	RCATGY	2 cut(s)	560, 847
PaeI	GCATGC	1 cut(s)	560
PceI	AGGCCT	1 cut(s)	90
PcsI	WCGNNNNNNNCGW	1 cut(s)	309
PdmI	GAANNNNTTC	2 cut(s)	59, 410
PfeI	GAWTC	1 cut(s)	98
PflMI	CCANNNNNTGG	1 cut(s)	276
PfoI	TCCNGGA	1 cut(s)	814
PkrI	GCNGC	5 cut(s)	7, 10, 268, 363, 454
PleI	GAGTC	2 cut(s)	76, 461
PpsI	GAGTC	2 cut(s)	76, 461
PsiI	TTATAA	1 cut(s)	861
Psp1406I	AACGTT	1 cut(s)	834
Psp6I	CCWGG	3 cut(s)	727, 763, 814
PspGI	CCWGG	3 cut(s)	727, 763, 814
PspN4I	GGNNCC	1 cut(s)	495
PspPI	GGNCC	2 cut(s)	483, 488
PstNI	CAGNNNCTG	1 cut(s)	11
PvuII	CAGCTG	1 cut(s)	459
RsaI	GTAC	2 cut(s)	419, 440
RsaNI	GTAC	2 cut(s)	418, 439
RseI	CAYNNNNRTG	1 cut(s)	786
SaqAI	TTAA	5 cut(s)	84, 711, 804, 831, 879
SatI	GCNGC	5 cut(s)	6, 9, 267, 362, 453
Sau3AI	GATC	6 cut(s)	136, 255, 294, 325, 724, 825
Sau96I	GGNCC	2 cut(s)	483, 488
SchI	GAGTC	2 cut(s)	77, 461
ScrFI	CCNGG	4 cut(s)	487, 729, 765, 816
SduI	GDGCHC	1 cut(s)	669
SfaNI	GCATC	2 cut(s)	114, 225
SinI	GGWCC	1 cut(s)	483
SmiMI	CAYNNNNRTG	1 cut(s)	786
SphI	GCATGC	1 cut(s)	560
Sse9I	AATT	4 cut(s)	122, 623, 708, 876
SseBI	AGGCCT	1 cut(s)	90
SsiI	CCGC	6 cut(s)	9, 186, 235, 267, 442, 452
SspMI	CTAG	1 cut(s)	423
StuI	AGGCCT	1 cut(s)	90
StyD4I	CCNGG	4 cut(s)	485, 727, 763, 814
StyI	CCWWGG	1 cut(s)	564
TaaI	ACNGT	6 cut(s)	181, 334, 683, 703, 742, 869
TaiI	ACGT	3 cut(s)	641, 804, 837
TaqI	TCGA	2 cut(s)	63, 204
TasI	AATT	4 cut(s)	122, 623, 708, 876
TauI	GCSGC	3 cut(s)	11, 269, 455
TfiI	GAWTC	1 cut(s)	98
Tru1I	TTAA	5 cut(s)	84, 711, 804, 831, 879
Tru9I	TTAA	5 cut(s)	84, 711, 804, 831, 879
TscAI	CASTG	1 cut(s)	674
TseFI	GTSAC	1 cut(s)	736
TseI	GCWGC	2 cut(s)	5, 361
Tsp45I	GTSAC	1 cut(s)	736
TspDTI	ATGAA	2 cut(s)	59, 403
TspRI	CASTG	1 cut(s)	674
Van91I	CCANNNNNTGG	1 cut(s)	276
VpaK11BI	GGWCC	1 cut(s)	483
XapI	RAATTY	1 cut(s)	623
XceI	RCATGY	2 cut(s)	560, 847
XmnI	GAANNNNTTC	2 cut(s)	59, 410
XspI	CTAG	1 cut(s)	423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.