Rorug03G0140600

1-aminocyclopropane-1-carboxylate oxidase homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0006415
Physical Location & Seq
Forward (+)
11570274 .. 11570621
348 bp
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UTR
Exon/CDS
Intron
Rorug03G0140600.1

Sequence Viewer

Length: 348 bp
ATGGAGGCTGAGGTGTGTAGAGTTGGTCTTCTTCTTGGTATACACCAAGGTTGGATAGAAGTAGAAATCGAAAGTGACTCTACCTTTCTGATTGCTGCACTCAAGAATGAGGAGAAGAATTTCTCGGGTAAGGAGTATTTAACTGCTTTTCAATCTGTGGAAATTCGACATATTTACCGTGAAGCAAATGGTGTTGCAGATAGACTTGCACACCTTACTAGTTTACCTTTTATTTATGATGTTTGGTTAGATGAGACTCCTGCTATTATTCAGGATGTACTATACGAGGATTATTGTAATAGTTCTACTATAACTTGGGATTCAGGTTTTATGTCCCTCCCGATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

115

Amino Acids

13.12

Weight (kDa)

4.36

Isoelectric Point (pI)

48.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 2 - 71 1.4e-07 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 40
AcsI RAATTY 2 cut(s) 118, 162
AfaI GTAC 1 cut(s) 279
AgsI TTSAA 1 cut(s) 152
AhlI ACTAGT 1 cut(s) 218
Alw26I GTCTC 1 cut(s) 248
Ama87I CYCGRG 1 cut(s) 124
ApeKI GCWGC 1 cut(s) 95
ApoI RAATTY 2 cut(s) 118, 162
Asp700I GAANNNNTTC 1 cut(s) 119
AvaI CYCGRG 1 cut(s) 124
BbsI GAAGAC 1 cut(s) 20
BbvCI CCTCAGC 1 cut(s) 9
BbvI GCAGC 1 cut(s) 82
BcoDI GTCTC 1 cut(s) 248
BcuI ACTAGT 1 cut(s) 218
BfaI CTAG 1 cut(s) 219
BisI GCNGC 1 cut(s) 96
BlsI GCNGC 1 cut(s) 97
BmeT110I CYCGRG 1 cut(s) 124
BpiI GAAGAC 1 cut(s) 20
Bpu10I CCTNAGC 1 cut(s) 9
BpuEI CTTGAG 1 cut(s) 86
BsaJI CCNNGG 1 cut(s) 46
BseDI CCNNGG 1 cut(s) 46
BseGI GGATG 1 cut(s) 280
BseRI GAGGAG 1 cut(s) 125
BseXI GCAGC 1 cut(s) 82
BsgI GTGCAG 1 cut(s) 81
BsiHKCI CYCGRG 1 cut(s) 124
BslFI GGGAC 1 cut(s) 319
BsmAI GTCTC 1 cut(s) 248
BsmFI GGGAC 1 cut(s) 319
BsoBI CYCGRG 1 cut(s) 124
BssECI CCNNGG 1 cut(s) 46
BssNAI GTATAC 1 cut(s) 41
BssT1I CCWWGG 1 cut(s) 46
Bst1107I GTATAC 1 cut(s) 41
Bst4CI ACNGT 1 cut(s) 179
BstDEI CTNAG 1 cut(s) 9
BstF5I GGATG 1 cut(s) 280
BstMAI GTCTC 1 cut(s) 248
BstV1I GCAGC 1 cut(s) 82
BstV2I GAAGAC 1 cut(s) 20
BstZ17I GTATAC 1 cut(s) 41
BtsCI GGATG 1 cut(s) 280
Csp6I GTAC 1 cut(s) 278
CviJI RGCY 1 cut(s) 8
CviKI_1 RGCY 1 cut(s) 8
CviQI GTAC 1 cut(s) 278
DdeI CTNAG 1 cut(s) 9
Eco130I CCWWGG 1 cut(s) 46
Eco88I CYCGRG 1 cut(s) 124
EcoT14I CCWWGG 1 cut(s) 46
ErhI CCWWGG 1 cut(s) 46
FaiI YATR 6 cut(s) 41, 171, 237, 283, 311, 332
FaqI GGGAC 1 cut(s) 319
FblI GTMKAC 1 cut(s) 40
Fnu4HI GCNGC 1 cut(s) 96
FokI GGATG 1 cut(s) 287
Fsp4HI GCNGC 1 cut(s) 96
FspBI CTAG 1 cut(s) 219
GluI GCNGC 1 cut(s) 96
HinfI GANTC 3 cut(s) 77, 256, 320
Hpy166II GTNNAC 2 cut(s) 41, 224
Hpy188I TCNGA 1 cut(s) 90
Hpy188III TCNNGA 3 cut(s) 103, 272, 340
Hpy8I GTNNAC 2 cut(s) 41, 224
HpyCH4III ACNGT 1 cut(s) 179
HpyCH4V TGCA 3 cut(s) 98, 197, 209
HpyF3I CTNAG 1 cut(s) 9
LpnPI CCDG 3 cut(s) 257, 273, 309
Lsp1109I GCAGC 1 cut(s) 82
MaeI CTAG 1 cut(s) 219
MaeIII GTNAC 1 cut(s) 74
MboII GAAGA 3 cut(s) 20, 23, 127
MluCI AATT 2 cut(s) 118, 162
MlyI GAGTC 2 cut(s) 71, 250
MmeI TCCRAC 1 cut(s) 32
MnlI CCTC 4 cut(s) 4, 103, 280, 347
MroXI GAANNNNTTC 1 cut(s) 119
MseI TTAA 1 cut(s) 140
NmuCI GTSAC 1 cut(s) 74
PdmI GAANNNNTTC 1 cut(s) 119
PfeI GAWTC 1 cut(s) 320
PkrI GCNGC 1 cut(s) 97
PleI GAGTC 2 cut(s) 71, 250
PpsI GAGTC 2 cut(s) 71, 250
RsaI GTAC 1 cut(s) 279
RsaNI GTAC 1 cut(s) 278
SaqAI TTAA 1 cut(s) 140
SatI GCNGC 1 cut(s) 96
SchI GAGTC 2 cut(s) 71, 250
SetI ASST 6 cut(s) 15, 52, 86, 216, 229, 328
SmlI CTYRAG 1 cut(s) 101
SmoI CTYRAG 1 cut(s) 101
SpeI ACTAGT 1 cut(s) 218
Sse9I AATT 2 cut(s) 118, 162
SspMI CTAG 1 cut(s) 219
StyI CCWWGG 1 cut(s) 46
TaaI ACNGT 1 cut(s) 179
TaqI TCGA 2 cut(s) 69, 166
TasI AATT 2 cut(s) 118, 162
TatI WGTACW 1 cut(s) 277
TfiI GAWTC 1 cut(s) 320
Tru1I TTAA 1 cut(s) 140
Tru9I TTAA 1 cut(s) 140
TseFI GTSAC 1 cut(s) 74
TseI GCWGC 1 cut(s) 95
Tsp45I GTSAC 1 cut(s) 74
XapI RAATTY 2 cut(s) 118, 162
XmiI GTMKAC 1 cut(s) 40
XmnI GAANNNNTTC 1 cut(s) 119
XspI CTAG 1 cut(s) 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.