FvH4_6g23100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0010582
Physical Location & Seq
Reverse (-)
16941422 .. 16942185
764 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g23100.t1

Sequence Viewer

Length: 264 bp
ATGGACATGAAGAAGATCACCGTCGTCGTCGTCCTTGTCATCGCAGCCCTGATGAGCCTCGTCGTGACTGCAAAGGACTCAGCAAAGACACCAGCGGCTGCCCCTAAGGGCGCCAAGCCTCCAGTAGCCTCAGCTACACCCGCCGGTGCTCCTAAGGATGCTCATGCCTCTAAAGCAGGTGGCGCCGCCCCCACTACCTTGTCCATTGCTGGATCATTCTTCAACTCCTTCCTTGTGTCTTTCTTTGCCTATTACATGCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

88

Amino Acids

8.77

Weight (kDa)

9.82

Isoelectric Point (pI)

31.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 167
Acc36I ACCTGC 1 cut(s) 167
AccB1I GGYRCC 2 cut(s) 110, 182
AciI CCGC 3 cut(s) 95, 141, 186
AclWI GGATC 1 cut(s) 220
AcyI GRCGYC 2 cut(s) 111, 183
AgsI TTSAA 1 cut(s) 223
AluBI AGCT 1 cut(s) 134
AluI AGCT 1 cut(s) 134
Alw21I GWGCWC 1 cut(s) 151
AlwI GGATC 1 cut(s) 220
AlwNI CAGNNNCTG 1 cut(s) 98
ApeKI GCWGC 2 cut(s) 44, 98
AspLEI GCGC 2 cut(s) 113, 185
AsuHPI GGTGA 1 cut(s) 10
AxyI CCTNAGG 2 cut(s) 105, 153
BanI GGYRCC 2 cut(s) 110, 182
Bbv12I GWGCWC 1 cut(s) 151
BbvCI CCTCAGC 1 cut(s) 130
BbvI GCAGC 2 cut(s) 56, 85
BfoI RGCGCY 2 cut(s) 114, 186
BfuAI ACCTGC 1 cut(s) 167
BisI GCNGC 4 cut(s) 45, 96, 99, 186
BlsI GCNGC 4 cut(s) 46, 97, 100, 187
BmiI GGNNCC 2 cut(s) 112, 184
BmsI GCATC 1 cut(s) 148
BpmI CTGGAG 1 cut(s) 105
Bpu10I CCTNAGC 1 cut(s) 130
BsaHI GRCGYC 2 cut(s) 111, 183
Bse118I RCCGGY 1 cut(s) 143
Bse1I ACTGG 1 cut(s) 122
Bse21I CCTNAGG 2 cut(s) 105, 153
Bse3DI GCAATG 1 cut(s) 204
BseGI GGATG 1 cut(s) 163
BseMI GCAATG 1 cut(s) 204
BseMII CTCAG 2 cut(s) 93, 144
BseNI ACTGG 1 cut(s) 122
BseXI GCAGC 2 cut(s) 56, 85
BshNI GGYRCC 2 cut(s) 110, 182
BsiHKAI GWGCWC 1 cut(s) 151
BsiSI CCGG 1 cut(s) 144
Bsp1286I GDGCHC 1 cut(s) 151
Bsp143I GATC 2 cut(s) 15, 212
BspACI CCGC 3 cut(s) 95, 141, 186
BspCNI CTCAG 2 cut(s) 92, 143
BspLI GGNNCC 2 cut(s) 112, 184
BspMI ACCTGC 1 cut(s) 167
BspPI GGATC 1 cut(s) 220
BspT107I GGYRCC 2 cut(s) 110, 182
BsrDI GCAATG 1 cut(s) 204
BsrFI RCCGGY 1 cut(s) 143
BsrI ACTGG 1 cut(s) 122
BssAI RCCGGY 1 cut(s) 143
BssMI GATC 2 cut(s) 15, 212
BssNI GRCGYC 2 cut(s) 111, 183
Bst4CI ACNGT 1 cut(s) 22
BstACI GRCGYC 2 cut(s) 111, 183
BstDEI CTNAG 4 cut(s) 79, 105, 130, 153
BstF5I GGATG 1 cut(s) 163
BstH2I RGCGCY 2 cut(s) 114, 186
BstHHI GCGC 2 cut(s) 113, 185
BstKTI GATC 2 cut(s) 18, 215
BstMBI GATC 2 cut(s) 15, 212
BstMWI GCNNNNNNNGC 3 cut(s) 140, 173, 182
BstNSI RCATGY 1 cut(s) 259
BstV1I GCAGC 2 cut(s) 56, 85
Bsu36I CCTNAGG 2 cut(s) 105, 153
BtgZI GCGATG 1 cut(s) 25
BtsCI GGATG 1 cut(s) 163
BveI ACCTGC 1 cut(s) 167
CaiI CAGNNNCTG 1 cut(s) 98
CfoI GCGC 2 cut(s) 113, 185
Cfr10I RCCGGY 1 cut(s) 143
CviAII CATG 3 cut(s) 7, 164, 256
CviJI RGCY 6 cut(s) 47, 57, 98, 118, 128, 134
CviKI_1 RGCY 6 cut(s) 47, 57, 98, 118, 128, 134
DdeI CTNAG 4 cut(s) 79, 105, 130, 153
DinI GGCGCC 2 cut(s) 112, 184
DpnI GATC 2 cut(s) 17, 214
DpnII GATC 2 cut(s) 15, 212
Eco81I CCTNAGG 2 cut(s) 105, 153
EgeI GGCGCC 2 cut(s) 112, 184
EheI GGCGCC 2 cut(s) 112, 184
FaeI CATG 3 cut(s) 10, 167, 259
FaiI YATR 3 cut(s) 8, 165, 257
FatI CATG 3 cut(s) 6, 163, 255
FauI CCCGC 1 cut(s) 148
Fnu4HI GCNGC 4 cut(s) 45, 96, 99, 186
FokI GGATG 1 cut(s) 170
Fsp4HI GCNGC 4 cut(s) 45, 96, 99, 186
GlaI GCGC 2 cut(s) 112, 184
GluI GCNGC 4 cut(s) 45, 96, 99, 186
GsuI CTGGAG 1 cut(s) 105
HaeII RGCGCY 2 cut(s) 114, 186
HapII CCGG 1 cut(s) 144
HhaI GCGC 2 cut(s) 113, 185
Hin1I GRCGYC 2 cut(s) 111, 183
Hin1II CATG 3 cut(s) 10, 167, 259
Hin6I GCGC 2 cut(s) 111, 183
HinP1I GCGC 2 cut(s) 111, 183
HinfI GANTC 1 cut(s) 77
HpaII CCGG 1 cut(s) 144
HphI GGTGA 1 cut(s) 10
Hpy188III TCNNGA 1 cut(s) 64
Hpy99I CGWCG 4 cut(s) 26, 29, 32, 65
HpyAV CCTTC 1 cut(s) 238
HpyCH4III ACNGT 1 cut(s) 22
HpyCH4V TGCA 2 cut(s) 71, 259
HpyF10VI GCNNNNNNNGC 3 cut(s) 140, 173, 182
HpyF3I CTNAG 4 cut(s) 79, 105, 130, 153
Hsp92I GRCGYC 2 cut(s) 111, 183
Hsp92II CATG 3 cut(s) 10, 167, 259
HspAI GCGC 2 cut(s) 111, 183
KasI GGCGCC 2 cut(s) 110, 182
Kzo9I GATC 2 cut(s) 15, 212
LmnI GCTCC 1 cut(s) 154
LpnPI CCDG 6 cut(s) 62, 105, 135, 157, 162, 195
Lsp1109I GCAGC 2 cut(s) 56, 85
LweI GCATC 1 cut(s) 148
MaeIII GTNAC 1 cut(s) 64
MalI GATC 2 cut(s) 17, 214
MboI GATC 2 cut(s) 15, 212
MboII GAAGA 3 cut(s) 22, 25, 211
MhlI GDGCHC 1 cut(s) 151
Mly113I GGCGCC 2 cut(s) 111, 183
MlyI GAGTC 1 cut(s) 71
MnlI CCTC 4 cut(s) 68, 129, 139, 178
MspA1I CMGCKG 1 cut(s) 95
MspI CCGG 1 cut(s) 144
MwoI GCNNNNNNNGC 3 cut(s) 140, 173, 182
NarI GGCGCC 2 cut(s) 111, 183
NdeII GATC 2 cut(s) 15, 212
NlaIII CATG 3 cut(s) 10, 167, 259
NlaIV GGNNCC 2 cut(s) 112, 184
NmuCI GTSAC 1 cut(s) 64
NspI RCATGY 1 cut(s) 259
PaqCI CACCTGC 1 cut(s) 167
PkrI GCNGC 4 cut(s) 46, 97, 100, 187
PleI GAGTC 1 cut(s) 71
PluTI GGCGCC 2 cut(s) 114, 186
PpsI GAGTC 1 cut(s) 71
PspN4I GGNNCC 2 cut(s) 112, 184
PstNI CAGNNNCTG 1 cut(s) 98
SatI GCNGC 4 cut(s) 45, 96, 99, 186
Sau3AI GATC 2 cut(s) 15, 212
SchI GAGTC 1 cut(s) 71
SduI GDGCHC 1 cut(s) 151
SetI ASST 3 cut(s) 136, 181, 200
SfaNI GCATC 1 cut(s) 148
SfoI GGCGCC 2 cut(s) 112, 184
SgrAI CRCCGGYG 1 cut(s) 143
SsiI CCGC 3 cut(s) 95, 141, 186
SspDI GGCGCC 2 cut(s) 110, 182
TaaI ACNGT 1 cut(s) 22
TauI GCSGC 2 cut(s) 98, 188
TseFI GTSAC 1 cut(s) 64
TseI GCWGC 2 cut(s) 44, 98
Tsp45I GTSAC 1 cut(s) 64
TspDTI ATGAA 1 cut(s) 23
XceI RCATGY 1 cut(s) 259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.