RchiOBHm_Chr3g0480951

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0010582
Physical Location & Seq
Reverse (-)
26901521 .. 26901965
445 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ44594

Sequence Viewer

Length: 243 bp
ATGGACATGAAGAAGATCTCCGTCGCCATCATTGTCATTGCAGCCTTCATGAGCCTCGTCGTGGCTGCAAAGGAGACAGGCAAGCCAGCAGCGGCCCCCAAGGCCAAGTCTCCAACAGCCTCATCTCCTACTGTAGGGGCTCATGCCCCTGCCCCATCAGGCGCCGTCCCCACTACCTTGTCCATTATTGAATCTTTCTTCAGCACCTTCCTTGTGTCCGTCTTTACCTATTACATGCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

80

Amino Acids

8.25

Weight (kDa)

9.52

Isoelectric Point (pI)

51.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 161
AciI CCGC 1 cut(s) 92
AcuI CTGAAG 1 cut(s) 184
AcyI GRCGYC 1 cut(s) 162
AfiI CCNNNNNNNGG 2 cut(s) 61, 134
AgsI TTSAA 1 cut(s) 191
Alw26I GTCTC 2 cut(s) 68, 114
AoxI GGCC 2 cut(s) 93, 102
ApeKI GCWGC 3 cut(s) 41, 65, 89
AspLEI GCGC 1 cut(s) 164
AspS9I GGNCC 1 cut(s) 94
BanI GGYRCC 1 cut(s) 161
BanII GRGCYC 1 cut(s) 142
BbvI GCAGC 3 cut(s) 52, 53, 101
BccI CCATC 2 cut(s) 35, 163
BceAI ACGGC 1 cut(s) 149
BcoDI GTCTC 2 cut(s) 68, 114
BfmI CTRYAG 1 cut(s) 132
BfoI RGCGCY 1 cut(s) 165
BglI GCCNNNNNGGC 1 cut(s) 101
BglII AGATCT 1 cut(s) 15
BisI GCNGC 4 cut(s) 42, 66, 90, 93
BlsI GCNGC 4 cut(s) 43, 67, 91, 94
BmgT120I GGNCC 1 cut(s) 94
BmiI GGNNCC 2 cut(s) 96, 163
BsaHI GRCGYC 1 cut(s) 162
BsaJI CCNNGG 1 cut(s) 99
Bsc4I CCNNNNNNNGG 2 cut(s) 61, 134
Bse3DI GCAATG 1 cut(s) 36
BseDI CCNNGG 1 cut(s) 99
BseLI CCNNNNNNNGG 2 cut(s) 61, 134
BseMI GCAATG 1 cut(s) 36
BseXI GCAGC 3 cut(s) 52, 53, 101
BshFI GGCC 2 cut(s) 95, 104
BshNI GGYRCC 1 cut(s) 161
BslFI GGGAC 1 cut(s) 152
BslI CCNNNNNNNGG 2 cut(s) 61, 134
BsmAI GTCTC 2 cut(s) 68, 114
BsmFI GGGAC 1 cut(s) 152
BsnI GGCC 2 cut(s) 95, 104
Bsp1286I GDGCHC 1 cut(s) 142
Bsp143I GATC 1 cut(s) 15
BspACI CCGC 1 cut(s) 92
BspANI GGCC 2 cut(s) 95, 104
BspHI TCATGA 1 cut(s) 48
BspLI GGNNCC 2 cut(s) 96, 163
BspT107I GGYRCC 1 cut(s) 161
BsrDI GCAATG 1 cut(s) 36
BssECI CCNNGG 1 cut(s) 99
BssMI GATC 1 cut(s) 15
BssNI GRCGYC 1 cut(s) 162
BssT1I CCWWGG 1 cut(s) 99
Bst4CI ACNGT 1 cut(s) 133
BstACI GRCGYC 1 cut(s) 162
BstC8I GCNNGC 2 cut(s) 83, 87
BstENI CCTNNNNNAGG 1 cut(s) 132
BstH2I RGCGCY 1 cut(s) 165
BstHHI GCGC 1 cut(s) 164
BstKTI GATC 1 cut(s) 18
BstMAI GTCTC 2 cut(s) 68, 114
BstMBI GATC 1 cut(s) 15
BstMWI GCNNNNNNNGC 1 cut(s) 101
BstNSI RCATGY 1 cut(s) 238
BstSFI CTRYAG 1 cut(s) 132
BstV1I GCAGC 3 cut(s) 52, 53, 101
BstX2I RGATCY 1 cut(s) 15
BstYI RGATCY 1 cut(s) 15
BsuRI GGCC 2 cut(s) 95, 104
Cac8I GCNNGC 2 cut(s) 83, 87
CciI TCATGA 1 cut(s) 48
CfoI GCGC 1 cut(s) 164
Cfr13I GGNCC 1 cut(s) 94
CviAII CATG 4 cut(s) 7, 49, 143, 235
CviJI RGCY 8 cut(s) 44, 54, 65, 85, 95, 104, 119, 140
CviKI_1 RGCY 8 cut(s) 44, 54, 65, 85, 95, 104, 119, 140
DinI GGCGCC 1 cut(s) 163
DpnI GATC 1 cut(s) 17
DpnII GATC 1 cut(s) 15
Eco130I CCWWGG 1 cut(s) 99
Eco24I GRGCYC 1 cut(s) 142
Eco57I CTGAAG 1 cut(s) 184
EcoNI CCTNNNNNAGG 1 cut(s) 132
EcoT14I CCWWGG 1 cut(s) 99
EcoT38I GRGCYC 1 cut(s) 142
EgeI GGCGCC 1 cut(s) 163
EheI GGCGCC 1 cut(s) 163
ErhI CCWWGG 1 cut(s) 99
FaeI CATG 4 cut(s) 10, 52, 146, 238
FaiI YATR 4 cut(s) 8, 50, 144, 236
FaqI GGGAC 1 cut(s) 152
FatI CATG 4 cut(s) 6, 48, 142, 234
Fnu4HI GCNGC 4 cut(s) 42, 66, 90, 93
FriOI GRGCYC 1 cut(s) 142
Fsp4HI GCNGC 4 cut(s) 42, 66, 90, 93
GlaI GCGC 1 cut(s) 163
GluI GCNGC 4 cut(s) 42, 66, 90, 93
HaeII RGCGCY 1 cut(s) 165
HaeIII GGCC 2 cut(s) 95, 104
HhaI GCGC 1 cut(s) 164
Hin1I GRCGYC 1 cut(s) 162
Hin1II CATG 4 cut(s) 10, 52, 146, 238
Hin6I GCGC 1 cut(s) 162
HinP1I GCGC 1 cut(s) 162
HinfI GANTC 1 cut(s) 191
Hpy188III TCNNGA 1 cut(s) 49
Hpy99I CGWCG 2 cut(s) 26, 62
HpyAV CCTTC 2 cut(s) 55, 217
HpyCH4III ACNGT 1 cut(s) 133
HpyCH4V TGCA 3 cut(s) 41, 68, 238
HpyF10VI GCNNNNNNNGC 1 cut(s) 101
Hsp92I GRCGYC 1 cut(s) 162
Hsp92II CATG 4 cut(s) 10, 52, 146, 238
HspAI GCGC 1 cut(s) 162
KasI GGCGCC 1 cut(s) 161
Kzo9I GATC 1 cut(s) 15
LpnPI CCDG 4 cut(s) 63, 99, 144, 162
Lsp1109I GCAGC 3 cut(s) 52, 53, 101
MalI GATC 1 cut(s) 17
MboI GATC 1 cut(s) 15
MboII GAAGA 3 cut(s) 22, 25, 190
MflI RGATCY 1 cut(s) 15
MhlI GDGCHC 1 cut(s) 142
Mly113I GGCGCC 1 cut(s) 162
MmeI TCCRAC 1 cut(s) 137
MnlI CCTC 2 cut(s) 65, 130
MspA1I CMGCKG 1 cut(s) 92
MwoI GCNNNNNNNGC 1 cut(s) 101
NarI GGCGCC 1 cut(s) 162
NdeII GATC 1 cut(s) 15
NlaIII CATG 4 cut(s) 10, 52, 146, 238
NlaIV GGNNCC 2 cut(s) 96, 163
NspI RCATGY 1 cut(s) 238
PagI TCATGA 1 cut(s) 48
PfeI GAWTC 1 cut(s) 191
PkrI GCNGC 4 cut(s) 43, 67, 91, 94
PluTI GGCGCC 1 cut(s) 165
PspN4I GGNNCC 2 cut(s) 96, 163
PspPI GGNCC 1 cut(s) 94
PsuI RGATCY 1 cut(s) 15
SatI GCNGC 4 cut(s) 42, 66, 90, 93
Sau3AI GATC 1 cut(s) 15
Sau96I GGNCC 1 cut(s) 94
SduI GDGCHC 1 cut(s) 142
SetI ASST 3 cut(s) 179, 209, 230
SfcI CTRYAG 1 cut(s) 132
SfiI GGCCNNNNNGGCC 1 cut(s) 101
SfoI GGCGCC 1 cut(s) 163
SsiI CCGC 1 cut(s) 92
SspDI GGCGCC 1 cut(s) 161
StyI CCWWGG 1 cut(s) 99
TaaI ACNGT 1 cut(s) 133
TauI GCSGC 1 cut(s) 95
TfiI GAWTC 1 cut(s) 191
TseI GCWGC 3 cut(s) 41, 65, 89
TspDTI ATGAA 2 cut(s) 23, 37
TspGWI ACGGA 2 cut(s) 10, 208
XagI CCTNNNNNAGG 1 cut(s) 132
XceI RCATGY 1 cut(s) 238
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.