Prupe.7G068400_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0010582
Physical Location & Seq
Forward (+)
10665345 .. 10665843
499 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G068400.1

Sequence Viewer

Length: 213 bp
ATGGACATGAAGAAGATCTCAATTGCCATCATCTTCATTGCTGCCTTGATGGGTGTTGTCTTGGCAGCTGAGAAGAAGGAATCCCCCAAGGCCGCTGCCCCCAAGGCTGCTACCCCTGCCCCGGCAAGCGGCGCCACCGCCACCACCTTTTCGGTTGTTGGGTCTTTGGTTGGTGCCTTAATTTTTGCTTTCTTTGGCTATTACCTTCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

71

Amino Acids

7.14

Weight (kDa)

9.52

Isoelectric Point (pI)

30.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 131, 173
AciI CCGC 3 cut(s) 93, 129, 138
AcuI CTGAAG 1 cut(s) 191
AcyI GRCGYC 1 cut(s) 132
AfiI CCNNNNNNNGG 2 cut(s) 121, 128
AluBI AGCT 1 cut(s) 68
AluI AGCT 1 cut(s) 68
AoxI GGCC 1 cut(s) 90
ApeKI GCWGC 4 cut(s) 41, 65, 95, 107
AspLEI GCGC 1 cut(s) 134
AsuC2I CCSGG 1 cut(s) 122
BanI GGYRCC 2 cut(s) 131, 173
BbvI GCAGC 4 cut(s) 28, 77, 82, 94
BccI CCATC 2 cut(s) 35, 43
BcnI CCSGG 1 cut(s) 122
BfoI RGCGCY 1 cut(s) 135
BglI GCCNNNNNGGC 1 cut(s) 104
BglII AGATCT 1 cut(s) 15
BisI GCNGC 6 cut(s) 42, 66, 93, 96, 108, 130
BlsI GCNGC 6 cut(s) 43, 67, 94, 97, 109, 131
Bme1390I CCNGG 1 cut(s) 122
BmiI GGNNCC 2 cut(s) 133, 175
BmrFI CCNGG 1 cut(s) 122
BpuMI CCSGG 1 cut(s) 122
BsaHI GRCGYC 1 cut(s) 132
BsaJI CCNNGG 3 cut(s) 87, 102, 120
Bsc4I CCNNNNNNNGG 2 cut(s) 121, 128
Bse3DI GCAATG 1 cut(s) 36
BseDI CCNNGG 3 cut(s) 87, 102, 120
BseLI CCNNNNNNNGG 2 cut(s) 121, 128
BseMI GCAATG 1 cut(s) 36
BseMII CTCAG 1 cut(s) 60
BseXI GCAGC 4 cut(s) 28, 77, 82, 94
BshFI GGCC 1 cut(s) 92
BshNI GGYRCC 2 cut(s) 131, 173
BsiSI CCGG 1 cut(s) 122
BslI CCNNNNNNNGG 2 cut(s) 121, 128
BsnI GGCC 1 cut(s) 92
Bsp143I GATC 1 cut(s) 15
BspACI CCGC 3 cut(s) 93, 129, 138
BspANI GGCC 1 cut(s) 92
BspCNI CTCAG 1 cut(s) 61
BspLI GGNNCC 2 cut(s) 133, 175
BspT107I GGYRCC 2 cut(s) 131, 173
BsrDI GCAATG 1 cut(s) 36
BssECI CCNNGG 3 cut(s) 87, 102, 120
BssMI GATC 1 cut(s) 15
BssNI GRCGYC 1 cut(s) 132
BssT1I CCWWGG 2 cut(s) 87, 102
BstACI GRCGYC 1 cut(s) 132
BstC8I GCNNGC 1 cut(s) 127
BstDEI CTNAG 1 cut(s) 69
BstH2I RGCGCY 1 cut(s) 135
BstHHI GCGC 1 cut(s) 134
BstKTI GATC 1 cut(s) 18
BstMBI GATC 1 cut(s) 15
BstMWI GCNNNNNNNGC 3 cut(s) 104, 116, 131
BstSCI CCNGG 1 cut(s) 120
BstV1I GCAGC 4 cut(s) 28, 77, 82, 94
BstX2I RGATCY 1 cut(s) 15
BstYI RGATCY 1 cut(s) 15
BsuRI GGCC 1 cut(s) 92
Cac8I GCNNGC 1 cut(s) 127
CfoI GCGC 1 cut(s) 134
CviAII CATG 1 cut(s) 7
CviJI RGCY 4 cut(s) 68, 92, 107, 198
CviKI_1 RGCY 4 cut(s) 68, 92, 107, 198
DdeI CTNAG 1 cut(s) 69
DinI GGCGCC 1 cut(s) 133
DpnI GATC 1 cut(s) 17
DpnII GATC 1 cut(s) 15
Eco130I CCWWGG 2 cut(s) 87, 102
Eco57I CTGAAG 1 cut(s) 191
EcoT14I CCWWGG 2 cut(s) 87, 102
EgeI GGCGCC 1 cut(s) 133
EheI GGCGCC 1 cut(s) 133
ErhI CCWWGG 2 cut(s) 87, 102
FaeI CATG 1 cut(s) 10
FaiI YATR 1 cut(s) 8
FatI CATG 1 cut(s) 6
Fnu4HI GCNGC 6 cut(s) 42, 66, 93, 96, 108, 130
Fsp4HI GCNGC 6 cut(s) 42, 66, 93, 96, 108, 130
GlaI GCGC 1 cut(s) 133
GluI GCNGC 6 cut(s) 42, 66, 93, 96, 108, 130
HaeII RGCGCY 1 cut(s) 135
HaeIII GGCC 1 cut(s) 92
HapII CCGG 1 cut(s) 122
HhaI GCGC 1 cut(s) 134
Hin1I GRCGYC 1 cut(s) 132
Hin1II CATG 1 cut(s) 10
Hin6I GCGC 1 cut(s) 132
HinP1I GCGC 1 cut(s) 132
HinfI GANTC 1 cut(s) 80
HpaII CCGG 1 cut(s) 122
HpyAV CCTTC 1 cut(s) 70
HpyF10VI GCNNNNNNNGC 3 cut(s) 104, 116, 131
HpyF3I CTNAG 1 cut(s) 69
Hsp92I GRCGYC 1 cut(s) 132
Hsp92II CATG 1 cut(s) 10
HspAI GCGC 1 cut(s) 132
KasI GGCGCC 1 cut(s) 131
Kzo9I GATC 1 cut(s) 15
LpnPI CCDG 2 cut(s) 129, 135
Lsp1109I GCAGC 4 cut(s) 28, 77, 82, 94
MalI GATC 1 cut(s) 17
MboI GATC 1 cut(s) 15
MboII GAAGA 4 cut(s) 22, 25, 25, 85
MfeI CAATTG 1 cut(s) 21
MflI RGATCY 1 cut(s) 15
MluCI AATT 2 cut(s) 21, 180
Mly113I GGCGCC 1 cut(s) 132
MseI TTAA 1 cut(s) 179
MspA1I CMGCKG 2 cut(s) 68, 95
MspI CCGG 1 cut(s) 122
MspR9I CCNGG 1 cut(s) 122
MunI CAATTG 1 cut(s) 21
MwoI GCNNNNNNNGC 3 cut(s) 104, 116, 131
NarI GGCGCC 1 cut(s) 132
NciI CCSGG 1 cut(s) 122
NdeII GATC 1 cut(s) 15
NlaIII CATG 1 cut(s) 10
NlaIV GGNNCC 2 cut(s) 133, 175
PfeI GAWTC 1 cut(s) 80
PkrI GCNGC 6 cut(s) 43, 67, 94, 97, 109, 131
PluTI GGCGCC 1 cut(s) 135
PspN4I GGNNCC 2 cut(s) 133, 175
PsuI RGATCY 1 cut(s) 15
PvuII CAGCTG 1 cut(s) 68
SaqAI TTAA 1 cut(s) 179
SatI GCNGC 6 cut(s) 42, 66, 93, 96, 108, 130
Sau3AI GATC 1 cut(s) 15
ScrFI CCNGG 1 cut(s) 122
SetI ASST 3 cut(s) 70, 149, 207
SfoI GGCGCC 1 cut(s) 133
SgeI CNNG 9 cut(s) 19, 58, 73, 100, 115, 128, 133, 134, 138
Sse9I AATT 2 cut(s) 21, 180
SsiI CCGC 3 cut(s) 93, 129, 138
SspDI GGCGCC 1 cut(s) 131
StyD4I CCNGG 1 cut(s) 120
StyI CCWWGG 2 cut(s) 87, 102
TasI AATT 2 cut(s) 21, 180
TauI GCSGC 2 cut(s) 95, 132
TfiI GAWTC 1 cut(s) 80
Tru1I TTAA 1 cut(s) 179
Tru9I TTAA 1 cut(s) 179
TseI GCWGC 4 cut(s) 41, 65, 95, 107
TspDTI ATGAA 2 cut(s) 23, 25
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.