Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0010582

Physical Location & Seq

Genomic Coordinates Reverse (-)

24923780 .. 24949547

Gene Structure 25768 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG239300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGGACATGAAGAAGATCTCCGTCGCCATCATTGTCATTGCAGCCTTCATGAGCCTCGTCGTGGCTGCAAAGGAGACAGGCAAGCCAGCAGCGGCCCCCAAGGCCAAGTCTCCAACAGCCTCATCTCCTACTGTAGGGGCTCATGCCCCTGCCCCATCAGGCGCCGTCCCCACTACCTTGTCCATTATTGAATCTTTCTTCAGCACCTTCCTTGTGTCCGTCTTTACCTATTACATGCATATTATTCTGTCAACTAACTTTCAGACAATACTGCATCGAGTAAATAATAAGATCTGCCTTGCCCTCATTGTCGTTGCCGCCTTAGTGAGCGTTGCCTTGGCCAAGGATCCCCCCAAGGTGACCCCCAAATCAGCCCCTGCTCCCATGGCTGCCAGCCCCAAGGCGACAGAAACTACGGGTGCTCATGCCCCTGCCCCTGCCCCATCAAACGCCGCCACTACCATGCCCGTTGCTGGTGCCTTCCTTTTGTCCTTCTTTGCCTACTATTTGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

171

Amino Acids

17.61

Weight (kDa)

9.72

Isoelectric Point (pI)

56.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010582)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g23090 FvH4_6g23100
malus_domestica	MD12G1065900.v1.1 MD12G1066000.v1.1
prunus_persica	Prupe.7G068400_v2.0.a1
pyrus_communis	pycom12g05720 pycom12g05740
rosa_chinensis	RchiOBHm_Chr3g0480951
rosa_laevigata	RLG00000023342 RLG00000023438 RLG00000023439
rosa_roxburghii	Rroxscaffold_6G00400860
rosa_rugosa	Rorug03G0188100 Rorug03G0188500
rosa_samantha	Rh3AG239300 Rh3BG273500 Rh3BG273700 Rh3CG269200 Rh3DG265100 Rh3DG265200
rosa_wichuraiana	Rw3G021410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	161, 476
AciI	CCGC	3 cut(s)	92, 318, 453
AclWI	GGATC	2 cut(s)	341, 354
AcoI	YGGCCR	1 cut(s)	339
AcuI	CTGAAG	1 cut(s)	184
AcyI	GRCGYC	1 cut(s)	162
AfiI	CCNNNNNNNGG	3 cut(s)	61, 134, 473
AgsI	TTSAA	1 cut(s)	191
Alw21I	GWGCWC	1 cut(s)	424
Alw26I	GTCTC	2 cut(s)	68, 114
AlwI	GGATC	2 cut(s)	341, 354
AlwNI	CAGNNNCTG	1 cut(s)	377
AoxI	GGCC	3 cut(s)	93, 102, 339
ApeKI	GCWGC	4 cut(s)	41, 65, 89, 389
AspLEI	GCGC	1 cut(s)	164
AspS9I	GGNCC	1 cut(s)	94
AsuHPI	GGTGA	1 cut(s)	370
BalI	TGGCCA	1 cut(s)	341
BamHI	GGATCC	1 cut(s)	346
BanI	GGYRCC	2 cut(s)	161, 476
BanII	GRGCYC	1 cut(s)	142
Bbv12I	GWGCWC	1 cut(s)	424
BbvI	GCAGC	4 cut(s)	52, 53, 101, 376
BccI	CCATC	3 cut(s)	35, 163, 451
BceAI	ACGGC	1 cut(s)	149
BcoDI	GTCTC	2 cut(s)	68, 114
BfmI	CTRYAG	1 cut(s)	132
BfoI	RGCGCY	1 cut(s)	165
BglI	GCCNNNNNGGC	1 cut(s)	101
BglII	AGATCT	2 cut(s)	15, 291
BisI	GCNGC	7 cut(s)	42, 66, 90, 93, 318, 390, 453
BlsI	GCNGC	7 cut(s)	43, 67, 91, 94, 319, 391, 454
BmgT120I	GGNCC	1 cut(s)	94
BmiI	GGNNCC	4 cut(s)	96, 163, 348, 478
BmsI	GCATC	1 cut(s)	283
BsaHI	GRCGYC	1 cut(s)	162
BsaJI	CCNNGG	6 cut(s)	99, 336, 342, 354, 384, 399
Bsc4I	CCNNNNNNNGG	3 cut(s)	61, 134, 473
Bse3DI	GCAATG	1 cut(s)	36
BseDI	CCNNGG	6 cut(s)	99, 336, 342, 354, 384, 399
BseLI	CCNNNNNNNGG	3 cut(s)	61, 134, 473
BseMI	GCAATG	1 cut(s)	36
BseXI	GCAGC	4 cut(s)	52, 53, 101, 376
BshFI	GGCC	3 cut(s)	95, 104, 341
BshNI	GGYRCC	2 cut(s)	161, 476
BsiHKAI	GWGCWC	1 cut(s)	424
BslFI	GGGAC	1 cut(s)	152
BslI	CCNNNNNNNGG	3 cut(s)	61, 134, 473
BsmAI	GTCTC	2 cut(s)	68, 114
BsmFI	GGGAC	1 cut(s)	152
BsnI	GGCC	3 cut(s)	95, 104, 341
Bsp1286I	GDGCHC	2 cut(s)	142, 424
Bsp143I	GATC	3 cut(s)	15, 291, 346
Bsp19I	CCATGG	1 cut(s)	384
BspACI	CCGC	3 cut(s)	92, 318, 453
BspANI	GGCC	3 cut(s)	95, 104, 341
BspHI	TCATGA	1 cut(s)	48
BspLI	GGNNCC	4 cut(s)	96, 163, 348, 478
BspPI	GGATC	2 cut(s)	341, 354
BspT107I	GGYRCC	2 cut(s)	161, 476
BsrDI	GCAATG	1 cut(s)	36
BssECI	CCNNGG	6 cut(s)	99, 336, 342, 354, 384, 399
BssMI	GATC	3 cut(s)	15, 291, 346
BssNI	GRCGYC	1 cut(s)	162
BssT1I	CCWWGG	6 cut(s)	99, 336, 342, 354, 384, 399
Bst4CI	ACNGT	1 cut(s)	133
BstACI	GRCGYC	1 cut(s)	162
BstC8I	GCNNGC	3 cut(s)	83, 87, 394
BstDEI	CTNAG	1 cut(s)	322
BstDSI	CCRYGG	1 cut(s)	384
BstEII	GGTNACC	1 cut(s)	358
BstENI	CCTNNNNNAGG	1 cut(s)	132
BstH2I	RGCGCY	1 cut(s)	165
BstHHI	GCGC	1 cut(s)	164
BstKTI	GATC	3 cut(s)	18, 294, 349
BstMAI	GTCTC	2 cut(s)	68, 114
BstMBI	GATC	3 cut(s)	15, 291, 346
BstMWI	GCNNNNNNNGC	2 cut(s)	101, 386
BstNSI	RCATGY	1 cut(s)	238
BstPI	GGTNACC	1 cut(s)	358
BstSFI	CTRYAG	1 cut(s)	132
BstV1I	GCAGC	4 cut(s)	52, 53, 101, 376
BstX2I	RGATCY	3 cut(s)	15, 291, 346
BstYI	RGATCY	3 cut(s)	15, 291, 346
BsuRI	GGCC	3 cut(s)	95, 104, 341
BtgI	CCRYGG	1 cut(s)	384
Cac8I	GCNNGC	3 cut(s)	83, 87, 394
CaiI	CAGNNNCTG	1 cut(s)	377
CciI	TCATGA	1 cut(s)	48
CfoI	GCGC	1 cut(s)	164
Cfr13I	GGNCC	1 cut(s)	94
CviAII	CATG	7 cut(s)	7, 49, 143, 235, 385, 425, 463
DdeI	CTNAG	1 cut(s)	322
DinI	GGCGCC	1 cut(s)	163
DpnI	GATC	3 cut(s)	17, 293, 348
DpnII	GATC	3 cut(s)	15, 291, 346
EaeI	YGGCCR	1 cut(s)	339
Eco130I	CCWWGG	6 cut(s)	99, 336, 342, 354, 384, 399
Eco24I	GRGCYC	1 cut(s)	142
Eco57I	CTGAAG	1 cut(s)	184
Eco91I	GGTNACC	1 cut(s)	358
EcoNI	CCTNNNNNAGG	1 cut(s)	132
EcoO65I	GGTNACC	1 cut(s)	358
EcoT14I	CCWWGG	6 cut(s)	99, 336, 342, 354, 384, 399
EcoT22I	ATGCAT	1 cut(s)	240
EcoT38I	GRGCYC	1 cut(s)	142
EgeI	GGCGCC	1 cut(s)	163
EheI	GGCGCC	1 cut(s)	163
ErhI	CCWWGG	6 cut(s)	99, 336, 342, 354, 384, 399
FaeI	CATG	7 cut(s)	10, 52, 146, 238, 388, 428, 466
FaiI	YATR	8 cut(s)	8, 50, 144, 236, 240, 386, 426, 464
FaqI	GGGAC	1 cut(s)	152
FatI	CATG	7 cut(s)	6, 48, 142, 234, 384, 424, 462
Fnu4HI	GCNGC	7 cut(s)	42, 66, 90, 93, 318, 390, 453
FriOI	GRGCYC	1 cut(s)	142
Fsp4HI	GCNGC	7 cut(s)	42, 66, 90, 93, 318, 390, 453
GlaI	GCGC	1 cut(s)	163
GluI	GCNGC	7 cut(s)	42, 66, 90, 93, 318, 390, 453
HaeII	RGCGCY	1 cut(s)	165
HaeIII	GGCC	3 cut(s)	95, 104, 341
HhaI	GCGC	1 cut(s)	164
Hin1I	GRCGYC	1 cut(s)	162
Hin1II	CATG	7 cut(s)	10, 52, 146, 238, 388, 428, 466
Hin6I	GCGC	1 cut(s)	162
HinP1I	GCGC	1 cut(s)	162
HincII	GTYRAC	1 cut(s)	252
HindII	GTYRAC	1 cut(s)	252
HinfI	GANTC	1 cut(s)	191
HphI	GGTGA	1 cut(s)	370
Hpy166II	GTNNAC	1 cut(s)	252
Hpy188I	TCNGA	1 cut(s)	264
Hpy188III	TCNNGA	1 cut(s)	49
Hpy8I	GTNNAC	1 cut(s)	252
Hpy99I	CGWCG	2 cut(s)	26, 62
HpyAV	CCTTC	4 cut(s)	55, 217, 490, 502
HpyCH4III	ACNGT	1 cut(s)	133
HpyCH4V	TGCA	5 cut(s)	41, 68, 238, 274, 511
HpyF10VI	GCNNNNNNNGC	2 cut(s)	101, 386
HpyF3I	CTNAG	1 cut(s)	322
Hsp92I	GRCGYC	1 cut(s)	162
Hsp92II	CATG	7 cut(s)	10, 52, 146, 238, 388, 428, 466
HspAI	GCGC	1 cut(s)	162
KasI	GGCGCC	1 cut(s)	161
Kzo9I	GATC	3 cut(s)	15, 291, 346
LmnI	GCTCC	1 cut(s)	385
LpnPI	CCDG	9 cut(s)	63, 99, 144, 162, 390, 406, 444, 450, 459
Lsp1109I	GCAGC	4 cut(s)	52, 53, 101, 376
LweI	GCATC	1 cut(s)	283
MaeIII	GTNAC	1 cut(s)	358
MalI	GATC	3 cut(s)	17, 293, 348
MboI	GATC	3 cut(s)	15, 291, 346
MboII	GAAGA	3 cut(s)	22, 25, 190
MflI	RGATCY	3 cut(s)	15, 291, 346
MhlI	GDGCHC	2 cut(s)	142, 424
MlsI	TGGCCA	1 cut(s)	341
MluNI	TGGCCA	1 cut(s)	341
Mly113I	GGCGCC	1 cut(s)	162
MmeI	TCCRAC	1 cut(s)	137
MnlI	CCTC	3 cut(s)	65, 130, 314
Mox20I	TGGCCA	1 cut(s)	341
Mph1103I	ATGCAT	1 cut(s)	240
MscI	TGGCCA	1 cut(s)	341
MslI	CAYNNNNRTG	1 cut(s)	461
Msp20I	TGGCCA	1 cut(s)	341
MspA1I	CMGCKG	1 cut(s)	92
MwoI	GCNNNNNNNGC	2 cut(s)	101, 386
NarI	GGCGCC	1 cut(s)	162
NcoI	CCATGG	1 cut(s)	384
NdeII	GATC	3 cut(s)	15, 291, 346
NlaIII	CATG	7 cut(s)	10, 52, 146, 238, 388, 428, 466
NlaIV	GGNNCC	4 cut(s)	96, 163, 348, 478
NmuCI	GTSAC	1 cut(s)	358
NsiI	ATGCAT	1 cut(s)	240
NspI	RCATGY	1 cut(s)	238
PagI	TCATGA	1 cut(s)	48
PfeI	GAWTC	1 cut(s)	191
PkrI	GCNGC	7 cut(s)	43, 67, 91, 94, 319, 391, 454
PluTI	GGCGCC	1 cut(s)	165
PspEI	GGTNACC	1 cut(s)	358
PspN4I	GGNNCC	4 cut(s)	96, 163, 348, 478
PspPI	GGNCC	1 cut(s)	94
PstNI	CAGNNNCTG	1 cut(s)	377
PsuI	RGATCY	3 cut(s)	15, 291, 346
RseI	CAYNNNNRTG	1 cut(s)	461
SatI	GCNGC	7 cut(s)	42, 66, 90, 93, 318, 390, 453
Sau3AI	GATC	3 cut(s)	15, 291, 346
Sau96I	GGNCC	1 cut(s)	94
SduI	GDGCHC	2 cut(s)	142, 424
SetI	ASST	4 cut(s)	179, 209, 230, 360
SfaNI	GCATC	1 cut(s)	283
SfcI	CTRYAG	1 cut(s)	132
SfiI	GGCCNNNNNGGCC	1 cut(s)	101
SfoI	GGCGCC	1 cut(s)	163
SmiMI	CAYNNNNRTG	1 cut(s)	461
SsiI	CCGC	3 cut(s)	92, 318, 453
SspDI	GGCGCC	1 cut(s)	161
StyI	CCWWGG	6 cut(s)	99, 336, 342, 354, 384, 399
TaaI	ACNGT	1 cut(s)	133
TaqI	TCGA	1 cut(s)	277
TauI	GCSGC	3 cut(s)	95, 320, 455
TfiI	GAWTC	1 cut(s)	191
TseFI	GTSAC	1 cut(s)	358
TseI	GCWGC	4 cut(s)	41, 65, 89, 389
Tsp45I	GTSAC	1 cut(s)	358
TspDTI	ATGAA	2 cut(s)	23, 37
TspGWI	ACGGA	2 cut(s)	10, 208
XagI	CCTNNNNNAGG	1 cut(s)	132
XceI	RCATGY	1 cut(s)	238
Zsp2I	ATGCAT	1 cut(s)	240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.