Rroxscaffold_6G00400860

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0010582
Physical Location & Seq
Forward (+)
23074866 .. 23075099
234 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00400860.1

Sequence Viewer

Length: 234 bp
ATGGACATGAAGAAGATCTGCCTTGCCCTCATTGTCGTTGCCGCCTTAGTGAGCGTTGCCTTGGCCAAGGAAACCCCCAAGGTGACCCCCAAGTCAGCCCCTGCTCCCATGGCTGCCAGCCCCAAGGCGACAGAAACTACCGGTGCTCATGCCCCTGCCCCATCAAGCGCCGCCACTACCATGCCCGTTGCTGGTGCCTTCCTTTTGTCCTTCTTTGCCTACTATTTGCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

77

Amino Acids

7.84

Weight (kDa)

9.3

Isoelectric Point (pI)

46.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 91
AccB1I GGYRCC 1 cut(s) 194
AciI CCGC 2 cut(s) 42, 171
AcoI YGGCCR 1 cut(s) 63
AfiI CCNNNNNNNGG 1 cut(s) 191
AgeI ACCGGT 1 cut(s) 140
Alw21I GWGCWC 1 cut(s) 148
AlwNI CAGNNNCTG 1 cut(s) 101
AoxI GGCC 1 cut(s) 63
ApeKI GCWGC 1 cut(s) 113
AsiGI ACCGGT 1 cut(s) 140
AspLEI GCGC 1 cut(s) 170
AsuHPI GGTGA 1 cut(s) 94
BalI TGGCCA 1 cut(s) 65
BanI GGYRCC 1 cut(s) 194
Bbv12I GWGCWC 1 cut(s) 148
BbvI GCAGC 1 cut(s) 100
BccI CCATC 1 cut(s) 169
BfoI RGCGCY 1 cut(s) 171
BglII AGATCT 1 cut(s) 15
BisI GCNGC 3 cut(s) 42, 114, 171
BlsI GCNGC 3 cut(s) 43, 115, 172
BmiI GGNNCC 1 cut(s) 196
BsaJI CCNNGG 5 cut(s) 60, 66, 78, 108, 123
BsaWI WCCGGW 1 cut(s) 140
Bsc4I CCNNNNNNNGG 1 cut(s) 191
Bse118I RCCGGY 1 cut(s) 140
BseDI CCNNGG 5 cut(s) 60, 66, 78, 108, 123
BseLI CCNNNNNNNGG 1 cut(s) 191
BseXI GCAGC 1 cut(s) 100
BshFI GGCC 1 cut(s) 65
BshNI GGYRCC 1 cut(s) 194
BshTI ACCGGT 1 cut(s) 140
BsiHKAI GWGCWC 1 cut(s) 148
BsiSI CCGG 1 cut(s) 141
BslI CCNNNNNNNGG 1 cut(s) 191
BsnI GGCC 1 cut(s) 65
Bsp1286I GDGCHC 1 cut(s) 148
Bsp143I GATC 1 cut(s) 15
Bsp19I CCATGG 1 cut(s) 108
BspACI CCGC 2 cut(s) 42, 171
BspANI GGCC 1 cut(s) 65
BspLI GGNNCC 1 cut(s) 196
BspT107I GGYRCC 1 cut(s) 194
BsrFI RCCGGY 1 cut(s) 140
BssAI RCCGGY 1 cut(s) 140
BssECI CCNNGG 5 cut(s) 60, 66, 78, 108, 123
BssMI GATC 1 cut(s) 15
BssT1I CCWWGG 5 cut(s) 60, 66, 78, 108, 123
BstC8I GCNNGC 1 cut(s) 118
BstDEI CTNAG 1 cut(s) 46
BstDSI CCRYGG 1 cut(s) 108
BstEII GGTNACC 1 cut(s) 82
BstH2I RGCGCY 1 cut(s) 171
BstHHI GCGC 1 cut(s) 170
BstKTI GATC 1 cut(s) 18
BstMBI GATC 1 cut(s) 15
BstMWI GCNNNNNNNGC 1 cut(s) 110
BstPI GGTNACC 1 cut(s) 82
BstV1I GCAGC 1 cut(s) 100
BstX2I RGATCY 1 cut(s) 15
BstYI RGATCY 1 cut(s) 15
BsuRI GGCC 1 cut(s) 65
BtgI CCRYGG 1 cut(s) 108
Cac8I GCNNGC 1 cut(s) 118
CaiI CAGNNNCTG 1 cut(s) 101
CfoI GCGC 1 cut(s) 170
Cfr10I RCCGGY 1 cut(s) 140
CspAI ACCGGT 1 cut(s) 140
CviAII CATG 4 cut(s) 7, 109, 149, 181
CviJI RGCY 4 cut(s) 65, 98, 113, 120
CviKI_1 RGCY 4 cut(s) 65, 98, 113, 120
DdeI CTNAG 1 cut(s) 46
DpnI GATC 1 cut(s) 17
DpnII GATC 1 cut(s) 15
DrdI GACNNNNNNGTC 1 cut(s) 91
DseDI GACNNNNNNGTC 1 cut(s) 91
EaeI YGGCCR 1 cut(s) 63
Eco130I CCWWGG 5 cut(s) 60, 66, 78, 108, 123
Eco91I GGTNACC 1 cut(s) 82
EcoO65I GGTNACC 1 cut(s) 82
EcoT14I CCWWGG 5 cut(s) 60, 66, 78, 108, 123
ErhI CCWWGG 5 cut(s) 60, 66, 78, 108, 123
FaeI CATG 4 cut(s) 10, 112, 152, 184
FaiI YATR 4 cut(s) 8, 110, 150, 182
FatI CATG 4 cut(s) 6, 108, 148, 180
Fnu4HI GCNGC 3 cut(s) 42, 114, 171
Fsp4HI GCNGC 3 cut(s) 42, 114, 171
GlaI GCGC 1 cut(s) 169
GluI GCNGC 3 cut(s) 42, 114, 171
HaeII RGCGCY 1 cut(s) 171
HaeIII GGCC 1 cut(s) 65
HapII CCGG 1 cut(s) 141
HhaI GCGC 1 cut(s) 170
Hin1II CATG 4 cut(s) 10, 112, 152, 184
Hin6I GCGC 1 cut(s) 168
HinP1I GCGC 1 cut(s) 168
HpaII CCGG 1 cut(s) 141
HphI GGTGA 1 cut(s) 94
HpyAV CCTTC 2 cut(s) 208, 220
HpyCH4V TGCA 1 cut(s) 229
HpyF10VI GCNNNNNNNGC 1 cut(s) 110
HpyF3I CTNAG 1 cut(s) 46
Hsp92II CATG 4 cut(s) 10, 112, 152, 184
HspAI GCGC 1 cut(s) 168
Kzo9I GATC 1 cut(s) 15
LmnI GCTCC 1 cut(s) 109
LpnPI CCDG 5 cut(s) 114, 130, 154, 168, 177
Lsp1109I GCAGC 1 cut(s) 100
MaeIII GTNAC 1 cut(s) 82
MalI GATC 1 cut(s) 17
MboI GATC 1 cut(s) 15
MboII GAAGA 2 cut(s) 22, 25
MflI RGATCY 1 cut(s) 15
MhlI GDGCHC 1 cut(s) 148
MlsI TGGCCA 1 cut(s) 65
MluNI TGGCCA 1 cut(s) 65
MnlI CCTC 1 cut(s) 38
Mox20I TGGCCA 1 cut(s) 65
MscI TGGCCA 1 cut(s) 65
MslI CAYNNNNRTG 1 cut(s) 179
Msp20I TGGCCA 1 cut(s) 65
MspI CCGG 1 cut(s) 141
MwoI GCNNNNNNNGC 1 cut(s) 110
NcoI CCATGG 1 cut(s) 108
NdeII GATC 1 cut(s) 15
NlaIII CATG 4 cut(s) 10, 112, 152, 184
NlaIV GGNNCC 1 cut(s) 196
NmuCI GTSAC 1 cut(s) 82
PinAI ACCGGT 1 cut(s) 140
PkrI GCNGC 3 cut(s) 43, 115, 172
PspEI GGTNACC 1 cut(s) 82
PspN4I GGNNCC 1 cut(s) 196
PstNI CAGNNNCTG 1 cut(s) 101
PsuI RGATCY 1 cut(s) 15
RseI CAYNNNNRTG 1 cut(s) 179
SatI GCNGC 3 cut(s) 42, 114, 171
Sau3AI GATC 1 cut(s) 15
SduI GDGCHC 1 cut(s) 148
SetI ASST 1 cut(s) 84
SmiMI CAYNNNNRTG 1 cut(s) 179
SsiI CCGC 2 cut(s) 42, 171
StyI CCWWGG 5 cut(s) 60, 66, 78, 108, 123
TauI GCSGC 2 cut(s) 44, 173
TseFI GTSAC 1 cut(s) 82
TseI GCWGC 1 cut(s) 113
Tsp45I GTSAC 1 cut(s) 82
TspDTI ATGAA 1 cut(s) 23
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.