Rh3DG265200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0010582
Physical Location & Seq
Reverse (-)
26416829 .. 26434684
17856 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG265200.1

Sequence Viewer

Length: 195 bp
ATGGACATGAAGAAGATCTCCGTCGCCATCATTGTCATTGCAGCCTTCATGAGCCTCGTCGTGGCTGAAAAGGAGACAGGCAAGCCAGCAGCGGCCCCCAAGGCCAAGTCTCCAACAGCCTCATCTCCTACTGGAGGGGCTCATGCCCCTGCTCCTGCCCCATCAGGCGCCGTCCCCACTACCTTCTACACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

64

Amino Acids

6.34

Weight (kDa)

9.6

Isoelectric Point (pI)

56.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 167
AciI CCGC 1 cut(s) 92
AcyI GRCGYC 1 cut(s) 168
AfiI CCNNNNNNNGG 2 cut(s) 61, 134
Alw26I GTCTC 2 cut(s) 68, 114
AoxI GGCC 2 cut(s) 93, 102
ApeKI GCWGC 2 cut(s) 41, 89
AspLEI GCGC 1 cut(s) 170
AspS9I GGNCC 1 cut(s) 94
BanI GGYRCC 1 cut(s) 167
BanII GRGCYC 1 cut(s) 142
BbvI GCAGC 2 cut(s) 53, 101
BccI CCATC 2 cut(s) 35, 169
BceAI ACGGC 1 cut(s) 155
BcoDI GTCTC 2 cut(s) 68, 114
BfoI RGCGCY 1 cut(s) 171
BglI GCCNNNNNGGC 1 cut(s) 101
BglII AGATCT 1 cut(s) 15
BisI GCNGC 3 cut(s) 42, 90, 93
BlsI GCNGC 3 cut(s) 43, 91, 94
BmgT120I GGNCC 1 cut(s) 94
BmiI GGNNCC 2 cut(s) 96, 169
BpmI CTGGAG 1 cut(s) 153
BsaHI GRCGYC 1 cut(s) 168
BsaJI CCNNGG 1 cut(s) 99
Bsc4I CCNNNNNNNGG 2 cut(s) 61, 134
Bse1I ACTGG 1 cut(s) 136
Bse3DI GCAATG 1 cut(s) 36
BseDI CCNNGG 1 cut(s) 99
BseLI CCNNNNNNNGG 2 cut(s) 61, 134
BseMI GCAATG 1 cut(s) 36
BseNI ACTGG 1 cut(s) 136
BseXI GCAGC 2 cut(s) 53, 101
BshFI GGCC 2 cut(s) 95, 104
BshNI GGYRCC 1 cut(s) 167
BslFI GGGAC 1 cut(s) 158
BslI CCNNNNNNNGG 2 cut(s) 61, 134
BsmAI GTCTC 2 cut(s) 68, 114
BsmFI GGGAC 1 cut(s) 158
BsnI GGCC 2 cut(s) 95, 104
Bsp1286I GDGCHC 1 cut(s) 142
Bsp143I GATC 1 cut(s) 15
BspACI CCGC 1 cut(s) 92
BspANI GGCC 2 cut(s) 95, 104
BspHI TCATGA 1 cut(s) 48
BspLI GGNNCC 2 cut(s) 96, 169
BspT107I GGYRCC 1 cut(s) 167
BsrDI GCAATG 1 cut(s) 36
BsrI ACTGG 1 cut(s) 136
BssECI CCNNGG 1 cut(s) 99
BssMI GATC 1 cut(s) 15
BssNI GRCGYC 1 cut(s) 168
BssT1I CCWWGG 1 cut(s) 99
BstACI GRCGYC 1 cut(s) 168
BstC8I GCNNGC 2 cut(s) 83, 87
BstENI CCTNNNNNAGG 1 cut(s) 132
BstH2I RGCGCY 1 cut(s) 171
BstHHI GCGC 1 cut(s) 170
BstKTI GATC 1 cut(s) 18
BstMAI GTCTC 2 cut(s) 68, 114
BstMBI GATC 1 cut(s) 15
BstMWI GCNNNNNNNGC 1 cut(s) 101
BstV1I GCAGC 2 cut(s) 53, 101
BstX2I RGATCY 1 cut(s) 15
BstYI RGATCY 1 cut(s) 15
BsuRI GGCC 2 cut(s) 95, 104
Cac8I GCNNGC 2 cut(s) 83, 87
CciI TCATGA 1 cut(s) 48
CfoI GCGC 1 cut(s) 170
Cfr13I GGNCC 1 cut(s) 94
CviAII CATG 3 cut(s) 7, 49, 143
CviJI RGCY 8 cut(s) 44, 54, 65, 85, 95, 104, 119, 140
CviKI_1 RGCY 8 cut(s) 44, 54, 65, 85, 95, 104, 119, 140
DinI GGCGCC 1 cut(s) 169
DpnI GATC 1 cut(s) 17
DpnII GATC 1 cut(s) 15
Eco130I CCWWGG 1 cut(s) 99
Eco24I GRGCYC 1 cut(s) 142
EcoNI CCTNNNNNAGG 1 cut(s) 132
EcoT14I CCWWGG 1 cut(s) 99
EcoT38I GRGCYC 1 cut(s) 142
EgeI GGCGCC 1 cut(s) 169
EheI GGCGCC 1 cut(s) 169
ErhI CCWWGG 1 cut(s) 99
FaeI CATG 3 cut(s) 10, 52, 146
FaiI YATR 3 cut(s) 8, 50, 144
FaqI GGGAC 1 cut(s) 158
FatI CATG 3 cut(s) 6, 48, 142
Fnu4HI GCNGC 3 cut(s) 42, 90, 93
FriOI GRGCYC 1 cut(s) 142
Fsp4HI GCNGC 3 cut(s) 42, 90, 93
GlaI GCGC 1 cut(s) 169
GluI GCNGC 3 cut(s) 42, 90, 93
GsuI CTGGAG 1 cut(s) 153
HaeII RGCGCY 1 cut(s) 171
HaeIII GGCC 2 cut(s) 95, 104
HhaI GCGC 1 cut(s) 170
Hin1I GRCGYC 1 cut(s) 168
Hin1II CATG 3 cut(s) 10, 52, 146
Hin6I GCGC 1 cut(s) 168
HinP1I GCGC 1 cut(s) 168
Hpy188III TCNNGA 1 cut(s) 49
Hpy99I CGWCG 2 cut(s) 26, 62
HpyAV CCTTC 2 cut(s) 55, 193
HpyCH4V TGCA 1 cut(s) 41
HpyF10VI GCNNNNNNNGC 1 cut(s) 101
Hsp92I GRCGYC 1 cut(s) 168
Hsp92II CATG 3 cut(s) 10, 52, 146
HspAI GCGC 1 cut(s) 168
KasI GGCGCC 1 cut(s) 167
Kzo9I GATC 1 cut(s) 15
LmnI GCTCC 1 cut(s) 157
LpnPI CCDG 6 cut(s) 63, 99, 117, 150, 162, 168
Lsp1109I GCAGC 2 cut(s) 53, 101
MalI GATC 1 cut(s) 17
MboI GATC 1 cut(s) 15
MboII GAAGA 2 cut(s) 22, 25
MflI RGATCY 1 cut(s) 15
MhlI GDGCHC 1 cut(s) 142
Mly113I GGCGCC 1 cut(s) 168
MmeI TCCRAC 1 cut(s) 137
MnlI CCTC 3 cut(s) 65, 128, 130
MseI TTAA 1 cut(s) 193
MspA1I CMGCKG 1 cut(s) 92
MwoI GCNNNNNNNGC 1 cut(s) 101
NarI GGCGCC 1 cut(s) 168
NdeII GATC 1 cut(s) 15
NlaIII CATG 3 cut(s) 10, 52, 146
NlaIV GGNNCC 2 cut(s) 96, 169
PagI TCATGA 1 cut(s) 48
PkrI GCNGC 3 cut(s) 43, 91, 94
PluTI GGCGCC 1 cut(s) 171
PspN4I GGNNCC 2 cut(s) 96, 169
PspPI GGNCC 1 cut(s) 94
PsuI RGATCY 1 cut(s) 15
SaqAI TTAA 1 cut(s) 193
SatI GCNGC 3 cut(s) 42, 90, 93
Sau3AI GATC 1 cut(s) 15
Sau96I GGNCC 1 cut(s) 94
SduI GDGCHC 1 cut(s) 142
SetI ASST 1 cut(s) 185
SfiI GGCCNNNNNGGCC 1 cut(s) 101
SfoI GGCGCC 1 cut(s) 169
SsiI CCGC 1 cut(s) 92
SspDI GGCGCC 1 cut(s) 167
StyI CCWWGG 1 cut(s) 99
TauI GCSGC 1 cut(s) 95
Tru1I TTAA 1 cut(s) 193
Tru9I TTAA 1 cut(s) 193
TseI GCWGC 2 cut(s) 41, 89
TspDTI ATGAA 2 cut(s) 23, 37
TspGWI ACGGA 1 cut(s) 10
XagI CCTNNNNNAGG 1 cut(s) 132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.