Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0010582

Physical Location & Seq

Genomic Coordinates Reverse (-)

22294685 .. 22298038

Gene Structure 3354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023342

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGGCTGCCCAGACTGCCCGATCCGAACAACCGAATACCGGATCGGGATTAAAAACCCCCAAAACAGCCTCCTTTCTCCCTGCCGCCACCGGATCTAAAACTGAACCCCATCGCTCGATCCGCGGACCCAAACCTAGCACCACCATCTTCCTGCACTACCACATTCCTTGGAAAGCAGCACCGGTTGAAGCCAAAACCGGTGGTCGCATAAAGGATTCTCCTCTCCCGGATCGGAGCGCTGCGCTCCTTCCCATACCCATTTCATTTCTCTCCTCGCATCTCTCATCTCTCATCTCCCACCCCACCATCTCCATCATTACACGCAGAGATCCATCTCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

114

Amino Acids

12.09

Weight (kDa)

10.7

Isoelectric Point (pI)

62.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010582)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g23090 FvH4_6g23100
malus_domestica	MD12G1065900.v1.1 MD12G1066000.v1.1
prunus_persica	Prupe.7G068400_v2.0.a1
pyrus_communis	pycom12g05720 pycom12g05740
rosa_chinensis	RchiOBHm_Chr3g0480951
rosa_laevigata	RLG00000023342 RLG00000023438 RLG00000023439
rosa_roxburghii	Rroxscaffold_6G00400860
rosa_rugosa	Rorug03G0188100 Rorug03G0188500
rosa_samantha	Rh3AG239300 Rh3BG273500 Rh3BG273700 Rh3CG269200 Rh3DG265100 Rh3DG265200
rosa_wichuraiana	Rw3G021410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	123
AciI	CCGC	3 cut(s)	84, 121, 123
AclWI	GGATC	6 cut(s)	15, 49, 100, 112, 237, 323
AfeI	AGCGCT	1 cut(s)	238
AfiI	CCNNNNNNNGG	1 cut(s)	38
AgeI	ACCGGT	2 cut(s)	181, 197
AgsI	TTSAA	1 cut(s)	188
AlwI	GGATC	6 cut(s)	15, 49, 100, 112, 237, 323
Aor51HI	AGCGCT	1 cut(s)	238
ApeKI	GCWGC	3 cut(s)	5, 176, 239
AsiGI	ACCGGT	2 cut(s)	181, 197
AspLEI	GCGC	2 cut(s)	239, 244
AspS9I	GGNCC	1 cut(s)	125
AsuC2I	CCSGG	1 cut(s)	227
AvaII	GGWCC	1 cut(s)	125
BbvI	GCAGC	2 cut(s)	188, 226
BccI	CCATC	5 cut(s)	117, 152, 314, 320, 340
BcnI	CCSGG	1 cut(s)	227
BfaI	CTAG	1 cut(s)	135
BfoI	RGCGCY	1 cut(s)	240
BisI	GCNGC	4 cut(s)	6, 84, 177, 240
BlsI	GCNGC	4 cut(s)	7, 85, 178, 241
Bme1390I	CCNGG	1 cut(s)	227
Bme18I	GGWCC	1 cut(s)	125
BmgT120I	GGNCC	1 cut(s)	125
BmiI	GGNNCC	1 cut(s)	127
BmrFI	CCNGG	1 cut(s)	227
BmsI	GCATC	1 cut(s)	286
BpuMI	CCSGG	1 cut(s)	227
BsaJI	CCNNGG	2 cut(s)	121, 167
BsaWI	WCCGGW	4 cut(s)	38, 89, 181, 197
Bsc4I	CCNNNNNNNGG	1 cut(s)	38
Bse118I	RCCGGY	2 cut(s)	181, 197
BseDI	CCNNGG	2 cut(s)	121, 167
BseLI	CCNNNNNNNGG	1 cut(s)	38
BseRI	GAGGAG	2 cut(s)	210, 262
BseXI	GCAGC	2 cut(s)	188, 226
BsgI	GTGCAG	1 cut(s)	137
Bsh1236I	CGCG	1 cut(s)	123
BshTI	ACCGGT	2 cut(s)	181, 197
BsiSI	CCGG	5 cut(s)	39, 90, 182, 198, 227
BslI	CCNNNNNNNGG	1 cut(s)	38
Bsp143I	GATC	6 cut(s)	20, 41, 92, 117, 229, 328
BspACI	CCGC	3 cut(s)	84, 121, 123
BspFNI	CGCG	1 cut(s)	123
BspLI	GGNNCC	1 cut(s)	127
BspPI	GGATC	6 cut(s)	15, 49, 100, 112, 237, 323
BsrFI	RCCGGY	2 cut(s)	181, 197
BssAI	RCCGGY	2 cut(s)	181, 197
BssECI	CCNNGG	2 cut(s)	121, 167
BssMI	GATC	6 cut(s)	20, 41, 92, 117, 229, 328
BssT1I	CCWWGG	1 cut(s)	167
BstDEI	CTNAG	1 cut(s)	336
BstDSI	CCRYGG	1 cut(s)	121
BstFNI	CGCG	1 cut(s)	123
BstH2I	RGCGCY	1 cut(s)	240
BstHHI	GCGC	2 cut(s)	239, 244
BstKTI	GATC	6 cut(s)	23, 44, 95, 120, 232, 331
BstMBI	GATC	6 cut(s)	20, 41, 92, 117, 229, 328
BstMWI	GCNNNNNNNGC	2 cut(s)	14, 120
BstSCI	CCNGG	1 cut(s)	225
BstUI	CGCG	1 cut(s)	123
BstV1I	GCAGC	2 cut(s)	188, 226
BstX2I	RGATCY	2 cut(s)	92, 328
BstYI	RGATCY	2 cut(s)	92, 328
BtgI	CCRYGG	1 cut(s)	121
BtgZI	GCGATG	1 cut(s)	95
CfoI	GCGC	2 cut(s)	239, 244
Cfr10I	RCCGGY	2 cut(s)	181, 197
Cfr13I	GGNCC	1 cut(s)	125
Cfr42I	CCGCGG	1 cut(s)	124
CspAI	ACCGGT	2 cut(s)	181, 197
CspCI	CAANNNNNGTGG	4 cut(s)	149, 181, 184, 216
CviJI	RGCY	3 cut(s)	5, 68, 191
CviKI_1	RGCY	3 cut(s)	5, 68, 191
DdeI	CTNAG	1 cut(s)	336
DpnI	GATC	6 cut(s)	22, 43, 94, 119, 231, 330
DpnII	GATC	6 cut(s)	20, 41, 92, 117, 229, 328
Eco130I	CCWWGG	1 cut(s)	167
Eco47I	GGWCC	1 cut(s)	125
Eco47III	AGCGCT	1 cut(s)	238
EcoT14I	CCWWGG	1 cut(s)	167
ErhI	CCWWGG	1 cut(s)	167
FaiI	YATR	2 cut(s)	209, 254
Fnu4HI	GCNGC	4 cut(s)	6, 84, 177, 240
Fsp4HI	GCNGC	4 cut(s)	6, 84, 177, 240
FspBI	CTAG	1 cut(s)	135
GlaI	GCGC	2 cut(s)	238, 243
GluI	GCNGC	4 cut(s)	6, 84, 177, 240
HaeII	RGCGCY	1 cut(s)	240
HapII	CCGG	5 cut(s)	39, 90, 182, 198, 227
HhaI	GCGC	2 cut(s)	239, 244
Hin6I	GCGC	2 cut(s)	237, 242
HinP1I	GCGC	2 cut(s)	237, 242
HinfI	GANTC	1 cut(s)	215
HpaII	CCGG	5 cut(s)	39, 90, 182, 198, 227
Hpy188I	TCNGA	2 cut(s)	25, 234
Hpy188III	TCNNGA	1 cut(s)	45
HpyAV	CCTTC	1 cut(s)	257
HpyCH4V	TGCA	1 cut(s)	154
HpyF10VI	GCNNNNNNNGC	2 cut(s)	14, 120
HpyF3I	CTNAG	1 cut(s)	336
HspAI	GCGC	2 cut(s)	237, 242
KspI	CCGCGG	1 cut(s)	124
Kzo9I	GATC	6 cut(s)	20, 41, 92, 117, 229, 328
LmnI	GCTCC	2 cut(s)	234, 249
LpnPI	CCDG	8 cut(s)	23, 52, 93, 103, 164, 195, 211, 240
Lsp1109I	GCAGC	2 cut(s)	188, 226
LweI	GCATC	1 cut(s)	286
MaeI	CTAG	1 cut(s)	135
MalI	GATC	6 cut(s)	22, 43, 94, 119, 231, 330
MboI	GATC	6 cut(s)	20, 41, 92, 117, 229, 328
MboII	GAAGA	1 cut(s)	139
MflI	RGATCY	2 cut(s)	92, 328
MnlI	CCTC	3 cut(s)	79, 231, 283
MseI	TTAA	1 cut(s)	50
MspA1I	CMGCKG	1 cut(s)	123
MspI	CCGG	5 cut(s)	39, 90, 182, 198, 227
MspR9I	CCNGG	1 cut(s)	227
MteI	GCGCNGCGC	1 cut(s)	240
MvnI	CGCG	1 cut(s)	123
MwoI	GCNNNNNNNGC	2 cut(s)	14, 120
NciI	CCSGG	1 cut(s)	227
NdeII	GATC	6 cut(s)	20, 41, 92, 117, 229, 328
NlaIV	GGNNCC	1 cut(s)	127
PfeI	GAWTC	1 cut(s)	215
PfoI	TCCNGGA	1 cut(s)	225
PinAI	ACCGGT	2 cut(s)	181, 197
PkrI	GCNGC	4 cut(s)	7, 85, 178, 241
PspN4I	GGNNCC	1 cut(s)	127
PspPI	GGNCC	1 cut(s)	125
PsuI	RGATCY	2 cut(s)	92, 328
SacII	CCGCGG	1 cut(s)	124
SaqAI	TTAA	1 cut(s)	50
SatI	GCNGC	4 cut(s)	6, 84, 177, 240
Sau3AI	GATC	6 cut(s)	20, 41, 92, 117, 229, 328
Sau96I	GGNCC	1 cut(s)	125
ScrFI	CCNGG	1 cut(s)	227
SetI	ASST	1 cut(s)	136
SfaNI	GCATC	1 cut(s)	286
Sfr303I	CCGCGG	1 cut(s)	124
SgrBI	CCGCGG	1 cut(s)	124
SinI	GGWCC	1 cut(s)	125
SsiI	CCGC	3 cut(s)	84, 121, 123
SspMI	CTAG	1 cut(s)	135
StyD4I	CCNGG	1 cut(s)	225
StyI	CCWWGG	1 cut(s)	167
TaqI	TCGA	1 cut(s)	116
TauI	GCSGC	1 cut(s)	86
TfiI	GAWTC	1 cut(s)	215
Tru1I	TTAA	1 cut(s)	50
Tru9I	TTAA	1 cut(s)	50
TseI	GCWGC	3 cut(s)	5, 176, 239
TspDTI	ATGAA	1 cut(s)	252
VpaK11BI	GGWCC	1 cut(s)	125
XspI	CTAG	1 cut(s)	135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.