Rh3DG265100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0010582
Physical Location & Seq
Reverse (-)
26404060 .. 26404299
240 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG265100.1

Sequence Viewer

Length: 240 bp
ATGGACATGAAGAAGATCTGCCTTGCCCTCATTGTCGTTGCCGCCTTAGTGAGCGTTGCCTTGGCCAAGGACACCCCCAAGGTGACCCCCAAGTCAGCCCCTGCTCCCATGGCTGCCAGCCCCAAGGCGACAGAAACTACGGGTGCTCATGCCCCTGCCCCGGCCCCATCAAGCGCCGCCACTACCATGCCCGTTGCTGGTGCCTTCCTTTTGTCCTTCTTTGCCTACTATTTGCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

79

Amino Acids

7.99

Weight (kDa)

9.3

Isoelectric Point (pI)

48.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 91
AccB1I GGYRCC 1 cut(s) 200
AciI CCGC 2 cut(s) 42, 177
AcoI YGGCCR 1 cut(s) 63
AfiI CCNNNNNNNGG 2 cut(s) 160, 197
Alw21I GWGCWC 1 cut(s) 148
AlwNI CAGNNNCTG 1 cut(s) 101
AoxI GGCC 2 cut(s) 63, 162
ApeKI GCWGC 1 cut(s) 113
AspLEI GCGC 1 cut(s) 176
AspS9I GGNCC 1 cut(s) 163
AsuC2I CCSGG 1 cut(s) 161
AsuHPI GGTGA 1 cut(s) 94
BalI TGGCCA 1 cut(s) 65
BanI GGYRCC 1 cut(s) 200
Bbv12I GWGCWC 1 cut(s) 148
BbvI GCAGC 1 cut(s) 100
BccI CCATC 1 cut(s) 175
BcnI CCSGG 1 cut(s) 161
BfoI RGCGCY 1 cut(s) 177
BglII AGATCT 1 cut(s) 15
BisI GCNGC 3 cut(s) 42, 114, 177
BlsI GCNGC 3 cut(s) 43, 115, 178
Bme1390I CCNGG 1 cut(s) 161
BmgT120I GGNCC 1 cut(s) 163
BmiI GGNNCC 2 cut(s) 165, 202
BmrFI CCNGG 1 cut(s) 161
BpuMI CCSGG 1 cut(s) 161
BsaJI CCNNGG 6 cut(s) 60, 66, 78, 108, 123, 159
Bsc4I CCNNNNNNNGG 2 cut(s) 160, 197
BseDI CCNNGG 6 cut(s) 60, 66, 78, 108, 123, 159
BseLI CCNNNNNNNGG 2 cut(s) 160, 197
BseXI GCAGC 1 cut(s) 100
BshFI GGCC 2 cut(s) 65, 164
BshNI GGYRCC 1 cut(s) 200
BsiHKAI GWGCWC 1 cut(s) 148
BsiSI CCGG 1 cut(s) 161
BslI CCNNNNNNNGG 2 cut(s) 160, 197
BsnI GGCC 2 cut(s) 65, 164
Bsp1286I GDGCHC 1 cut(s) 148
Bsp143I GATC 1 cut(s) 15
Bsp19I CCATGG 1 cut(s) 108
BspACI CCGC 2 cut(s) 42, 177
BspANI GGCC 2 cut(s) 65, 164
BspLI GGNNCC 2 cut(s) 165, 202
BspT107I GGYRCC 1 cut(s) 200
BssECI CCNNGG 6 cut(s) 60, 66, 78, 108, 123, 159
BssMI GATC 1 cut(s) 15
BssT1I CCWWGG 5 cut(s) 60, 66, 78, 108, 123
BstC8I GCNNGC 1 cut(s) 118
BstDEI CTNAG 1 cut(s) 46
BstDSI CCRYGG 1 cut(s) 108
BstEII GGTNACC 1 cut(s) 82
BstH2I RGCGCY 1 cut(s) 177
BstHHI GCGC 1 cut(s) 176
BstKTI GATC 1 cut(s) 18
BstMBI GATC 1 cut(s) 15
BstMWI GCNNNNNNNGC 1 cut(s) 110
BstPI GGTNACC 1 cut(s) 82
BstSCI CCNGG 1 cut(s) 159
BstV1I GCAGC 1 cut(s) 100
BstX2I RGATCY 1 cut(s) 15
BstYI RGATCY 1 cut(s) 15
BsuRI GGCC 2 cut(s) 65, 164
BtgI CCRYGG 1 cut(s) 108
Cac8I GCNNGC 1 cut(s) 118
CaiI CAGNNNCTG 1 cut(s) 101
CfoI GCGC 1 cut(s) 176
Cfr13I GGNCC 1 cut(s) 163
CviAII CATG 4 cut(s) 7, 109, 149, 187
CviJI RGCY 5 cut(s) 65, 98, 113, 120, 164
CviKI_1 RGCY 5 cut(s) 65, 98, 113, 120, 164
DdeI CTNAG 1 cut(s) 46
DpnI GATC 1 cut(s) 17
DpnII GATC 1 cut(s) 15
DrdI GACNNNNNNGTC 1 cut(s) 91
DseDI GACNNNNNNGTC 1 cut(s) 91
EaeI YGGCCR 1 cut(s) 63
Eco130I CCWWGG 5 cut(s) 60, 66, 78, 108, 123
Eco91I GGTNACC 1 cut(s) 82
EcoO65I GGTNACC 1 cut(s) 82
EcoT14I CCWWGG 5 cut(s) 60, 66, 78, 108, 123
ErhI CCWWGG 5 cut(s) 60, 66, 78, 108, 123
FaeI CATG 4 cut(s) 10, 112, 152, 190
FaiI YATR 4 cut(s) 8, 110, 150, 188
FatI CATG 4 cut(s) 6, 108, 148, 186
Fnu4HI GCNGC 3 cut(s) 42, 114, 177
Fsp4HI GCNGC 3 cut(s) 42, 114, 177
GlaI GCGC 1 cut(s) 175
GluI GCNGC 3 cut(s) 42, 114, 177
HaeII RGCGCY 1 cut(s) 177
HaeIII GGCC 2 cut(s) 65, 164
HapII CCGG 1 cut(s) 161
HhaI GCGC 1 cut(s) 176
Hin1II CATG 4 cut(s) 10, 112, 152, 190
Hin6I GCGC 1 cut(s) 174
HinP1I GCGC 1 cut(s) 174
HpaII CCGG 1 cut(s) 161
HphI GGTGA 1 cut(s) 94
HpyAV CCTTC 2 cut(s) 214, 226
HpyCH4V TGCA 1 cut(s) 235
HpyF10VI GCNNNNNNNGC 1 cut(s) 110
HpyF3I CTNAG 1 cut(s) 46
Hsp92II CATG 4 cut(s) 10, 112, 152, 190
HspAI GCGC 1 cut(s) 174
Kzo9I GATC 1 cut(s) 15
LmnI GCTCC 1 cut(s) 109
LpnPI CCDG 5 cut(s) 114, 130, 168, 174, 183
Lsp1109I GCAGC 1 cut(s) 100
MaeIII GTNAC 1 cut(s) 82
MalI GATC 1 cut(s) 17
MboI GATC 1 cut(s) 15
MboII GAAGA 2 cut(s) 22, 25
MflI RGATCY 1 cut(s) 15
MhlI GDGCHC 1 cut(s) 148
MlsI TGGCCA 1 cut(s) 65
MluNI TGGCCA 1 cut(s) 65
MnlI CCTC 1 cut(s) 38
Mox20I TGGCCA 1 cut(s) 65
MscI TGGCCA 1 cut(s) 65
MslI CAYNNNNRTG 1 cut(s) 185
Msp20I TGGCCA 1 cut(s) 65
MspI CCGG 1 cut(s) 161
MspR9I CCNGG 1 cut(s) 161
MwoI GCNNNNNNNGC 1 cut(s) 110
NciI CCSGG 1 cut(s) 161
NcoI CCATGG 1 cut(s) 108
NdeII GATC 1 cut(s) 15
NlaIII CATG 4 cut(s) 10, 112, 152, 190
NlaIV GGNNCC 2 cut(s) 165, 202
NmuCI GTSAC 1 cut(s) 82
PkrI GCNGC 3 cut(s) 43, 115, 178
PspEI GGTNACC 1 cut(s) 82
PspN4I GGNNCC 2 cut(s) 165, 202
PspPI GGNCC 1 cut(s) 163
PstNI CAGNNNCTG 1 cut(s) 101
PsuI RGATCY 1 cut(s) 15
RseI CAYNNNNRTG 1 cut(s) 185
SatI GCNGC 3 cut(s) 42, 114, 177
Sau3AI GATC 1 cut(s) 15
Sau96I GGNCC 1 cut(s) 163
ScrFI CCNGG 1 cut(s) 161
SduI GDGCHC 1 cut(s) 148
SetI ASST 1 cut(s) 84
SmiMI CAYNNNNRTG 1 cut(s) 185
SsiI CCGC 2 cut(s) 42, 177
StyD4I CCNGG 1 cut(s) 159
StyI CCWWGG 5 cut(s) 60, 66, 78, 108, 123
TauI GCSGC 2 cut(s) 44, 179
TseFI GTSAC 1 cut(s) 82
TseI GCWGC 1 cut(s) 113
Tsp45I GTSAC 1 cut(s) 82
TspDTI ATGAA 1 cut(s) 23
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.