Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0010582

Physical Location & Seq

Genomic Coordinates Reverse (-)

16403524 .. 16405282

Gene Structure 1759 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0188500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGAAGGTGATCGCTGCTTATTTGCTGGCTGTGTTGGGCGGCAAGACCAGCCCTACTGCCGAAGACATCAAGAGCATCCTTGGCGCTGTTGGTGCTGAAGCAGATGATGACAGGCTTCAGTTTCTTCTCAAGGAAGTTCAGGGTAAGGACATAACAGAGCTTATTGCCTCTGGAAGGGAGAAGTTGGCTTCTGTTCCATCTGGTGGTGGAGGTGCTGTTGCAGTGGCTGCCCCTGCTGGTGGCGGTGCTGCTGCTCCTGCTGCAGCTGAGGCAAAGAAGGAAGAAAAGGTTGAGGAGAAAGAGGAGTCTGATGATGATATGGGCTTCAGTCTGTTTGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0007275 GO:0008150 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0021700 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0071695 GO:0080147 GO:0090558 GO:0090627 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 map00330 map01100

Pfam Domains

Protein Families

2OG-FeII_Oxy_3

Protein Analysis

113

Amino Acids

11.4

Weight (kDa)

4.46

Isoelectric Point (pI)

38.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_60s	PF00428	17 - 112	4e-26	60s Acidic ribosomal protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0010582)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g23090 FvH4_6g23100
malus_domestica	MD12G1065900.v1.1 MD12G1066000.v1.1
prunus_persica	Prupe.7G068400_v2.0.a1
pyrus_communis	pycom12g05720 pycom12g05740
rosa_chinensis	RchiOBHm_Chr3g0480951
rosa_laevigata	RLG00000023342 RLG00000023438 RLG00000023439
rosa_roxburghii	Rroxscaffold_6G00400860
rosa_rugosa	Rorug03G0188100 Rorug03G0188500
rosa_samantha	Rh3AG239300 Rh3BG273500 Rh3BG273700 Rh3CG269200 Rh3DG265100 Rh3DG265200
rosa_wichuraiana	Rw3G021410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	203
AciI	CCGC	2 cut(s)	39, 243
AcuI	CTGAAG	3 cut(s)	101, 117, 310
AfiI	CCNNNNNNNGG	3 cut(s)	174, 203, 239
AluBI	AGCT	2 cut(s)	160, 266
AluI	AGCT	2 cut(s)	160, 266
AlwNI	CAGNNNCTG	1 cut(s)	227
ApeKI	GCWGC	6 cut(s)	14, 227, 248, 251, 260, 263
AspLEI	GCGC	1 cut(s)	86
AsuHPI	GGTGA	1 cut(s)	19
BbsI	GAAGAC	1 cut(s)	69
BbvCI	CCTCAGC	1 cut(s)	267
BbvI	GCAGC	5 cut(s)	214, 235, 238, 247, 275
BccI	CCATC	1 cut(s)	205
BfaI	CTAG	1 cut(s)	340
BfmI	CTRYAG	1 cut(s)	261
BfoI	RGCGCY	1 cut(s)	87
BisI	GCNGC	7 cut(s)	15, 40, 228, 249, 252, 261, 264
BlsI	GCNGC	7 cut(s)	16, 41, 229, 250, 253, 262, 265
BmsI	GCATC	1 cut(s)	84
BpiI	GAAGAC	1 cut(s)	69
Bpu10I	CCTNAGC	1 cut(s)	267
BpuEI	CTTGAG	1 cut(s)	113
BsaJI	CCNNGG	1 cut(s)	79
BsaXI	ACNNNNNCTCC	2 cut(s)	201, 231
Bsc4I	CCNNNNNNNGG	3 cut(s)	174, 203, 239
BseDI	CCNNGG	1 cut(s)	79
BseGI	GGATG	1 cut(s)	75
BseLI	CCNNNNNNNGG	3 cut(s)	174, 203, 239
BseMII	CTCAG	1 cut(s)	258
BseRI	GAGGAG	2 cut(s)	308, 317
BseXI	GCAGC	5 cut(s)	214, 235, 238, 247, 275
BslI	CCNNNNNNNGG	3 cut(s)	174, 203, 239
Bsp143I	GATC	1 cut(s)	9
BspACI	CCGC	2 cut(s)	39, 243
BspCNI	CTCAG	1 cut(s)	259
BspMAI	CTGCAG	1 cut(s)	265
BssECI	CCNNGG	1 cut(s)	79
BssMI	GATC	1 cut(s)	9
BssT1I	CCWWGG	1 cut(s)	79
BstAPI	GCANNNNNTGC	1 cut(s)	227
BstC8I	GCNNGC	1 cut(s)	27
BstDEI	CTNAG	1 cut(s)	267
BstENI	CCTNNNNNAGG	1 cut(s)	172
BstF5I	GGATG	1 cut(s)	75
BstH2I	RGCGCY	1 cut(s)	87
BstHHI	GCGC	1 cut(s)	86
BstKTI	GATC	1 cut(s)	12
BstMBI	GATC	1 cut(s)	9
BstMWI	GCNNNNNNNGC	8 cut(s)	48, 81, 92, 227, 233, 257, 260, 269
BstSFI	CTRYAG	1 cut(s)	261
BstV1I	GCAGC	5 cut(s)	214, 235, 238, 247, 275
BstV2I	GAAGAC	1 cut(s)	69
BtsCI	GGATG	1 cut(s)	75
BtsI	GCAGTG	1 cut(s)	228
BtsIMutI	CAGTG	1 cut(s)	228
Cac8I	GCNNGC	1 cut(s)	27
CaiI	CAGNNNCTG	1 cut(s)	227
CfoI	GCGC	1 cut(s)	86
CviJI	RGCY	8 cut(s)	29, 51, 115, 160, 188, 227, 266, 324
CviKI_1	RGCY	8 cut(s)	29, 51, 115, 160, 188, 227, 266, 324
DdeI	CTNAG	1 cut(s)	267
DpnI	GATC	1 cut(s)	11
DpnII	GATC	1 cut(s)	9
Eco130I	CCWWGG	1 cut(s)	79
Eco57I	CTGAAG	3 cut(s)	101, 117, 310
EcoNI	CCTNNNNNAGG	1 cut(s)	172
EcoT14I	CCWWGG	1 cut(s)	79
ErhI	CCWWGG	1 cut(s)	79
FaiI	YATR	2 cut(s)	152, 320
Fnu4HI	GCNGC	7 cut(s)	15, 40, 228, 249, 252, 261, 264
FokI	GGATG	1 cut(s)	62
Fsp4HI	GCNGC	7 cut(s)	15, 40, 228, 249, 252, 261, 264
FspBI	CTAG	1 cut(s)	340
GlaI	GCGC	1 cut(s)	85
GluI	GCNGC	7 cut(s)	15, 40, 228, 249, 252, 261, 264
HaeII	RGCGCY	1 cut(s)	87
HhaI	GCGC	1 cut(s)	86
Hin6I	GCGC	1 cut(s)	84
HinP1I	GCGC	1 cut(s)	84
HinfI	GANTC	1 cut(s)	305
HphI	GGTGA	1 cut(s)	19
Hpy188I	TCNGA	1 cut(s)	310
Hpy188III	TCNNGA	2 cut(s)	70, 171
HpyAV	CCTTC	2 cut(s)	168, 271
HpyCH4V	TGCA	2 cut(s)	221, 263
HpyF10VI	GCNNNNNNNGC	8 cut(s)	48, 81, 92, 227, 233, 257, 260, 269
HpyF3I	CTNAG	1 cut(s)	267
HspAI	GCGC	1 cut(s)	84
Kzo9I	GATC	1 cut(s)	9
LmnI	GCTCC	1 cut(s)	259
LpnPI	CCDG	9 cut(s)	11, 61, 97, 125, 156, 186, 222, 246, 270
Lsp1109I	GCAGC	5 cut(s)	214, 235, 238, 247, 275
LweI	GCATC	1 cut(s)	84
MaeI	CTAG	1 cut(s)	340
MalI	GATC	1 cut(s)	11
MboI	GATC	1 cut(s)	9
MboII	GAAGA	3 cut(s)	74, 116, 293
MlyI	GAGTC	1 cut(s)	314
MnlI	CCTC	5 cut(s)	178, 203, 262, 286, 295
MspA1I	CMGCKG	1 cut(s)	266
MwoI	GCNNNNNNNGC	8 cut(s)	48, 81, 92, 227, 233, 257, 260, 269
NdeII	GATC	1 cut(s)	9
PflMI	CCANNNNNTGG	1 cut(s)	203
PkrI	GCNGC	7 cut(s)	16, 41, 229, 250, 253, 262, 265
PleI	GAGTC	1 cut(s)	313
PpsI	GAGTC	1 cut(s)	313
PstI	CTGCAG	1 cut(s)	265
PstNI	CAGNNNCTG	1 cut(s)	227
PvuII	CAGCTG	1 cut(s)	266
SatI	GCNGC	7 cut(s)	15, 40, 228, 249, 252, 261, 264
Sau3AI	GATC	1 cut(s)	9
SchI	GAGTC	1 cut(s)	314
SetI	ASST	5 cut(s)	9, 162, 214, 268, 291
SfaNI	GCATC	1 cut(s)	84
SfcI	CTRYAG	1 cut(s)	261
SmlI	CTYRAG	1 cut(s)	128
SmoI	CTYRAG	1 cut(s)	128
SsiI	CCGC	2 cut(s)	39, 243
SspMI	CTAG	1 cut(s)	340
StyI	CCWWGG	1 cut(s)	79
TauI	GCSGC	1 cut(s)	42
TscAI	CASTG	1 cut(s)	228
TseI	GCWGC	6 cut(s)	14, 227, 248, 251, 260, 263
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	228
Van91I	CCANNNNNTGG	1 cut(s)	203
XagI	CCTNNNNNAGG	1 cut(s)	172
XspI	CTAG	1 cut(s)	340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.