Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0010582

Physical Location & Seq

Genomic Coordinates Reverse (-)

7674545 .. 7680643

Gene Structure 6099 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1066000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

ATGGAAATGAAGAAGATCTCGCTTGCCATCATCGTCATTGCTGCCTTGATCAGTGTGGTCTTGGCAGCCGGTAAGGAACATGCACCGAAGGCAGCTGCTGCCCCGAAGGACGCAGCGGCCGCCAGAGCTCCAACTGCCACCAAGGACGCTGCCCCTGGCCCAGCAAGTGGTGCCGCCTCCGCTACCTTGTCAGTCGTTGGATCATTGGCTGGGGCCTCCCTTTTGTCGTTCTTTGGGTTTTATCTTCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

84

Amino Acids

8.09

Weight (kDa)

9.87

Isoelectric Point (pI)

20.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010582)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g23090 FvH4_6g23100
malus_domestica	MD12G1065900.v1.1 MD12G1066000.v1.1
prunus_persica	Prupe.7G068400_v2.0.a1
pyrus_communis	pycom12g05720 pycom12g05740
rosa_chinensis	RchiOBHm_Chr3g0480951
rosa_laevigata	RLG00000023342 RLG00000023438 RLG00000023439
rosa_roxburghii	Rroxscaffold_6G00400860
rosa_rugosa	Rorug03G0188100 Rorug03G0188500
rosa_samantha	Rh3AG239300 Rh3BG273500 Rh3BG273700 Rh3CG269200 Rh3DG265100 Rh3DG265200
rosa_wichuraiana	Rw3G021410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	170
AccB7I	CCANNNNNTGG	1 cut(s)	167
AciI	CCGC	4 cut(s)	116, 120, 174, 180
AclWI	GGATC	1 cut(s)	208
AcoI	YGGCCR	1 cut(s)	117
AfiI	CCNNNNNNNGG	1 cut(s)	167
AjnI	CCWGG	1 cut(s)	154
AluBI	AGCT	2 cut(s)	95, 128
AluI	AGCT	2 cut(s)	95, 128
Alw21I	GWGCWC	1 cut(s)	130
AlwI	GGATC	1 cut(s)	208
AlwNI	CAGNNNCTG	1 cut(s)	98
AoxI	GGCC	3 cut(s)	117, 157, 213
ApeKI	GCWGC	7 cut(s)	41, 65, 92, 95, 98, 113, 149
AspS9I	GGNCC	2 cut(s)	158, 213
BanI	GGYRCC	1 cut(s)	170
BanII	GRGCYC	1 cut(s)	130
Bbv12I	GWGCWC	1 cut(s)	130
BbvI	GCAGC	7 cut(s)	28, 77, 82, 85, 104, 125, 136
BccI	CCATC	1 cut(s)	35
BciT130I	CCWGG	1 cut(s)	156
BclI	TGATCA	1 cut(s)	48
BglII	AGATCT	1 cut(s)	15
Bme1390I	CCNGG	1 cut(s)	156
BmgT120I	GGNCC	2 cut(s)	158, 213
BmiI	GGNNCC	2 cut(s)	172, 214
BmrFI	CCNGG	1 cut(s)	156
BsaJI	CCNNGG	2 cut(s)	141, 154
Bsc4I	CCNNNNNNNGG	1 cut(s)	167
Bse118I	RCCGGY	1 cut(s)	68
Bse3DI	GCAATG	1 cut(s)	36
BseBI	CCWGG	1 cut(s)	156
BseDI	CCNNGG	2 cut(s)	141, 154
BseLI	CCNNNNNNNGG	1 cut(s)	167
BseMI	GCAATG	1 cut(s)	36
BseX3I	CGGCCG	1 cut(s)	117
BseXI	GCAGC	7 cut(s)	28, 77, 82, 85, 104, 125, 136
BseYI	CCCAGC	2 cut(s)	160, 209
Bsh1285I	CGRYCG	1 cut(s)	120
BshFI	GGCC	3 cut(s)	119, 159, 215
BshNI	GGYRCC	1 cut(s)	170
BsiEI	CGRYCG	1 cut(s)	120
BsiHKAI	GWGCWC	1 cut(s)	130
BsiSI	CCGG	1 cut(s)	69
BslI	CCNNNNNNNGG	1 cut(s)	167
BsnI	GGCC	3 cut(s)	119, 159, 215
Bsp1286I	GDGCHC	1 cut(s)	130
Bsp143I	GATC	3 cut(s)	15, 48, 200
BspACI	CCGC	4 cut(s)	116, 120, 174, 180
BspANI	GGCC	3 cut(s)	119, 159, 215
BspLI	GGNNCC	2 cut(s)	172, 214
BspPI	GGATC	1 cut(s)	208
BspT107I	GGYRCC	1 cut(s)	170
BsrDI	GCAATG	1 cut(s)	36
BsrFI	RCCGGY	1 cut(s)	68
BssAI	RCCGGY	1 cut(s)	68
BssECI	CCNNGG	2 cut(s)	141, 154
BssMI	GATC	3 cut(s)	15, 48, 200
BssT1I	CCWWGG	1 cut(s)	141
Bst2UI	CCWGG	1 cut(s)	156
BstAPI	GCANNNNNTGC	2 cut(s)	98, 170
BstC8I	GCNNGC	1 cut(s)	24
BstKTI	GATC	3 cut(s)	18, 51, 203
BstMBI	GATC	3 cut(s)	15, 48, 200
BstMCI	CGRYCG	1 cut(s)	120
BstMWI	GCNNNNNNNGC	7 cut(s)	89, 98, 119, 125, 134, 170, 179
BstNI	CCWGG	1 cut(s)	156
BstNSI	RCATGY	1 cut(s)	83
BstSCI	CCNGG	1 cut(s)	154
BstV1I	GCAGC	7 cut(s)	28, 77, 82, 85, 104, 125, 136
BstX2I	RGATCY	1 cut(s)	15
BstYI	RGATCY	1 cut(s)	15
BstZI	CGGCCG	1 cut(s)	117
BsuRI	GGCC	3 cut(s)	119, 159, 215
BtsIMutI	CAGTG	1 cut(s)	58
Cac8I	GCNNGC	1 cut(s)	24
CaiI	CAGNNNCTG	1 cut(s)	98
CciNI	GCGGCCGC	1 cut(s)	117
Cfr10I	RCCGGY	1 cut(s)	68
Cfr13I	GGNCC	2 cut(s)	158, 213
CseI	GACGC	2 cut(s)	119, 155
CviAII	CATG	1 cut(s)	80
CviJI	RGCY	7 cut(s)	68, 95, 119, 128, 159, 209, 215
CviKI_1	RGCY	7 cut(s)	68, 95, 119, 128, 159, 209, 215
DpnI	GATC	3 cut(s)	17, 50, 202
DpnII	GATC	3 cut(s)	15, 48, 200
EaeI	YGGCCR	1 cut(s)	117
EagI	CGGCCG	1 cut(s)	117
Ecl136II	GAGCTC	1 cut(s)	128
EclXI	CGGCCG	1 cut(s)	117
Eco130I	CCWWGG	1 cut(s)	141
Eco24I	GRGCYC	1 cut(s)	130
Eco52I	CGGCCG	1 cut(s)	117
Eco53kI	GAGCTC	1 cut(s)	128
EcoICRI	GAGCTC	1 cut(s)	128
EcoO109I	RGGNCCY	1 cut(s)	213
EcoRII	CCWGG	1 cut(s)	154
EcoT14I	CCWWGG	1 cut(s)	141
EcoT38I	GRGCYC	1 cut(s)	130
ErhI	CCWWGG	1 cut(s)	141
FaeI	CATG	1 cut(s)	83
FaiI	YATR	1 cut(s)	81
FatI	CATG	1 cut(s)	79
FbaI	TGATCA	1 cut(s)	48
FriOI	GRGCYC	1 cut(s)	130
GsaI	CCCAGC	2 cut(s)	164, 213
HaeIII	GGCC	3 cut(s)	119, 159, 215
HapII	CCGG	1 cut(s)	69
HgaI	GACGC	2 cut(s)	119, 155
Hin1II	CATG	1 cut(s)	83
HpaII	CCGG	1 cut(s)	69
HpyAV	CCTTC	2 cut(s)	82, 100
HpyCH4V	TGCA	1 cut(s)	83
HpyF10VI	GCNNNNNNNGC	7 cut(s)	89, 98, 119, 125, 134, 170, 179
Hsp92II	CATG	1 cut(s)	83
Ksp22I	TGATCA	1 cut(s)	48
Kzo9I	GATC	3 cut(s)	15, 48, 200
LmnI	GCTCC	1 cut(s)	133
LpnPI	CCDG	6 cut(s)	82, 136, 141, 168, 174, 195
Lsp1109I	GCAGC	7 cut(s)	28, 77, 82, 85, 104, 125, 136
MalI	GATC	3 cut(s)	17, 50, 202
MboI	GATC	3 cut(s)	15, 48, 200
MboII	GAAGA	3 cut(s)	22, 25, 236
MflI	RGATCY	1 cut(s)	15
MhlI	GDGCHC	1 cut(s)	130
MmeI	TCCRAC	2 cut(s)	155, 178
MnlI	CCTC	2 cut(s)	187, 226
MspA1I	CMGCKG	2 cut(s)	95, 116
MspI	CCGG	1 cut(s)	69
MspR9I	CCNGG	1 cut(s)	156
MvaI	CCWGG	1 cut(s)	156
MwoI	GCNNNNNNNGC	7 cut(s)	89, 98, 119, 125, 134, 170, 179
NdeII	GATC	3 cut(s)	15, 48, 200
NlaIII	CATG	1 cut(s)	83
NlaIV	GGNNCC	2 cut(s)	172, 214
NotI	GCGGCCGC	1 cut(s)	117
NspI	RCATGY	1 cut(s)	83
PflMI	CCANNNNNTGG	1 cut(s)	167
Psp124BI	GAGCTC	1 cut(s)	130
Psp6I	CCWGG	1 cut(s)	154
PspFI	CCCAGC	2 cut(s)	160, 209
PspGI	CCWGG	1 cut(s)	154
PspN4I	GGNNCC	2 cut(s)	172, 214
PspPI	GGNCC	2 cut(s)	158, 213
PstNI	CAGNNNCTG	1 cut(s)	98
PsuI	RGATCY	1 cut(s)	15
PvuII	CAGCTG	1 cut(s)	95
SacI	GAGCTC	1 cut(s)	130
Sau3AI	GATC	3 cut(s)	15, 48, 200
Sau96I	GGNCC	2 cut(s)	158, 213
ScrFI	CCNGG	1 cut(s)	156
SduI	GDGCHC	1 cut(s)	130
SetI	ASST	3 cut(s)	97, 130, 188
SsiI	CCGC	4 cut(s)	116, 120, 174, 180
SstI	GAGCTC	1 cut(s)	130
StyD4I	CCNGG	1 cut(s)	154
StyI	CCWWGG	1 cut(s)	141
TauI	GCSGC	3 cut(s)	119, 122, 176
TscAI	CASTG	1 cut(s)	58
TseI	GCWGC	7 cut(s)	41, 65, 92, 95, 98, 113, 149
TspDTI	ATGAA	1 cut(s)	23
TspRI	CASTG	1 cut(s)	58
Van91I	CCANNNNNTGG	1 cut(s)	167
XceI	RCATGY	1 cut(s)	83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.