RLG00000023439

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0010582
Physical Location & Seq
Forward (+)
23798642 .. 23800301
1660 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023439

Sequence Viewer

Length: 462 bp
ATGGCCGCCCAGACTGCCCGATCCAAACAACTGAATACCGGATCGGGATTAAAAACCCCCAACACAGCCCCCTTTCTCCTTGCCATCACCGGATCTGAAACTAAACCCCATCGCTCGATCCGCGAACCCAAACCTAGCCCCACCATCTTCCTGTACTACCACATTCCCAGGAAAGCAACACCGGTTGAAGCCAAAACCGGCGGTCGCATCAAGGATTCTCCTCTCCCGGATCAGAGCACTGCGATCTGCCTTGCCCTCATTGTCGTTGCCGCCTTAGTGAGCGTTGCCTTGGCCAAGGACACCCCCAAGGTGACCCCCAAGTCAGCCCCTGCTCCCATGGCTGCCAGCCCCAAGGCGACAGAAACTACCGGTGCTCATGCGCCTGCCCCATCAAGCGCCACCACTACCATGCCCGTTGCTGGTGCCTTCCTTTTGTCCTTCTTTGCCTACTATTTGCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

154

Amino Acids

15.94

Weight (kDa)

9.95

Isoelectric Point (pI)

53.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 319
AccB1I GGYRCC 1 cut(s) 422
AccII CGCG 1 cut(s) 123
AciI CCGC 4 cut(s) 6, 121, 201, 270
AclWI GGATC 5 cut(s) 15, 49, 100, 112, 237
AcoI YGGCCR 2 cut(s) 3, 291
AfaI GTAC 1 cut(s) 155
AfiI CCNNNNNNNGG 1 cut(s) 419
AgeI ACCGGT 2 cut(s) 181, 368
AgsI TTSAA 1 cut(s) 188
AjnI CCWGG 1 cut(s) 167
Alw21I GWGCWC 2 cut(s) 239, 376
AlwI GGATC 5 cut(s) 15, 49, 100, 112, 237
AlwNI CAGNNNCTG 1 cut(s) 329
AoxI GGCC 2 cut(s) 3, 291
ApeKI GCWGC 1 cut(s) 341
AsiGI ACCGGT 2 cut(s) 181, 368
AspLEI GCGC 2 cut(s) 382, 398
AsuC2I CCSGG 1 cut(s) 227
AsuHPI GGTGA 2 cut(s) 79, 322
BalI TGGCCA 1 cut(s) 293
BanI GGYRCC 1 cut(s) 422
Bbv12I GWGCWC 2 cut(s) 239, 376
BbvI GCAGC 1 cut(s) 328
BccI CCATC 4 cut(s) 92, 117, 152, 397
BciT130I CCWGG 1 cut(s) 169
BcnI CCSGG 1 cut(s) 227
BfaI CTAG 1 cut(s) 135
BfoI RGCGCY 1 cut(s) 399
BisI GCNGC 3 cut(s) 6, 270, 342
BlsI GCNGC 3 cut(s) 7, 271, 343
Bme1390I CCNGG 2 cut(s) 169, 227
BmiI GGNNCC 1 cut(s) 424
BmrFI CCNGG 2 cut(s) 169, 227
BmsI GCATC 1 cut(s) 216
BpuMI CCSGG 1 cut(s) 227
BsaJI CCNNGG 6 cut(s) 167, 288, 294, 306, 336, 351
BsaWI WCCGGW 4 cut(s) 38, 89, 181, 368
Bsc4I CCNNNNNNNGG 1 cut(s) 419
Bse118I RCCGGY 3 cut(s) 181, 197, 368
BseBI CCWGG 1 cut(s) 169
BseDI CCNNGG 6 cut(s) 167, 288, 294, 306, 336, 351
BseLI CCNNNNNNNGG 1 cut(s) 419
BseRI GAGGAG 1 cut(s) 210
BseXI GCAGC 1 cut(s) 328
Bsh1236I CGCG 1 cut(s) 123
Bsh1285I CGRYCG 1 cut(s) 205
BshFI GGCC 2 cut(s) 5, 293
BshNI GGYRCC 1 cut(s) 422
BshTI ACCGGT 2 cut(s) 181, 368
BsiEI CGRYCG 1 cut(s) 205
BsiHKAI GWGCWC 2 cut(s) 239, 376
BsiSI CCGG 6 cut(s) 39, 90, 182, 198, 227, 369
BslI CCNNNNNNNGG 1 cut(s) 419
BsnI GGCC 2 cut(s) 5, 293
Bsp1286I GDGCHC 2 cut(s) 239, 376
Bsp143I GATC 6 cut(s) 20, 41, 92, 117, 229, 243
Bsp19I CCATGG 1 cut(s) 336
BspACI CCGC 4 cut(s) 6, 121, 201, 270
BspANI GGCC 2 cut(s) 5, 293
BspFNI CGCG 1 cut(s) 123
BspLI GGNNCC 1 cut(s) 424
BspPI GGATC 5 cut(s) 15, 49, 100, 112, 237
BspT107I GGYRCC 1 cut(s) 422
BsrFI RCCGGY 3 cut(s) 181, 197, 368
BssAI RCCGGY 3 cut(s) 181, 197, 368
BssECI CCNNGG 6 cut(s) 167, 288, 294, 306, 336, 351
BssMI GATC 6 cut(s) 20, 41, 92, 117, 229, 243
BssT1I CCWWGG 5 cut(s) 288, 294, 306, 336, 351
Bst2UI CCWGG 1 cut(s) 169
BstC8I GCNNGC 2 cut(s) 346, 384
BstDEI CTNAG 1 cut(s) 274
BstDSI CCRYGG 1 cut(s) 336
BstEII GGTNACC 1 cut(s) 310
BstFNI CGCG 1 cut(s) 123
BstH2I RGCGCY 1 cut(s) 399
BstHHI GCGC 2 cut(s) 382, 398
BstKTI GATC 6 cut(s) 23, 44, 95, 120, 232, 246
BstMBI GATC 6 cut(s) 20, 41, 92, 117, 229, 243
BstMCI CGRYCG 1 cut(s) 205
BstMWI GCNNNNNNNGC 3 cut(s) 14, 120, 338
BstNI CCWGG 1 cut(s) 169
BstPI GGTNACC 1 cut(s) 310
BstSCI CCNGG 2 cut(s) 167, 225
BstUI CGCG 1 cut(s) 123
BstV1I GCAGC 1 cut(s) 328
BstX2I RGATCY 1 cut(s) 92
BstYI RGATCY 1 cut(s) 92
BsuRI GGCC 2 cut(s) 5, 293
BtgI CCRYGG 1 cut(s) 336
BtgZI GCGATG 1 cut(s) 95
BtsI GCAGTG 1 cut(s) 237
BtsIMutI CAGTG 1 cut(s) 237
Cac8I GCNNGC 2 cut(s) 346, 384
CaiI CAGNNNCTG 1 cut(s) 329
CfoI GCGC 2 cut(s) 382, 398
Cfr10I RCCGGY 3 cut(s) 181, 197, 368
Csp6I GTAC 1 cut(s) 154
CspAI ACCGGT 2 cut(s) 181, 368
CviAII CATG 3 cut(s) 337, 377, 409
CviJI RGCY 8 cut(s) 5, 68, 138, 191, 293, 326, 341, 348
CviKI_1 RGCY 8 cut(s) 5, 68, 138, 191, 293, 326, 341, 348
CviQI GTAC 1 cut(s) 154
DdeI CTNAG 1 cut(s) 274
DpnI GATC 6 cut(s) 22, 43, 94, 119, 231, 245
DpnII GATC 6 cut(s) 20, 41, 92, 117, 229, 243
DrdI GACNNNNNNGTC 1 cut(s) 319
DseDI GACNNNNNNGTC 1 cut(s) 319
EaeI YGGCCR 2 cut(s) 3, 291
Eco130I CCWWGG 5 cut(s) 288, 294, 306, 336, 351
Eco91I GGTNACC 1 cut(s) 310
EcoO65I GGTNACC 1 cut(s) 310
EcoRII CCWGG 1 cut(s) 167
EcoT14I CCWWGG 5 cut(s) 288, 294, 306, 336, 351
ErhI CCWWGG 5 cut(s) 288, 294, 306, 336, 351
FaeI CATG 3 cut(s) 340, 380, 412
FaiI YATR 3 cut(s) 338, 378, 410
FatI CATG 3 cut(s) 336, 376, 408
Fnu4HI GCNGC 3 cut(s) 6, 270, 342
Fsp4HI GCNGC 3 cut(s) 6, 270, 342
FspBI CTAG 1 cut(s) 135
GlaI GCGC 2 cut(s) 381, 397
GluI GCNGC 3 cut(s) 6, 270, 342
HaeII RGCGCY 1 cut(s) 399
HaeIII GGCC 2 cut(s) 5, 293
HapII CCGG 6 cut(s) 39, 90, 182, 198, 227, 369
HhaI GCGC 2 cut(s) 382, 398
Hin1II CATG 3 cut(s) 340, 380, 412
Hin6I GCGC 2 cut(s) 380, 396
HinP1I GCGC 2 cut(s) 380, 396
HinfI GANTC 1 cut(s) 215
HpaII CCGG 6 cut(s) 39, 90, 182, 198, 227, 369
HphI GGTGA 2 cut(s) 79, 322
Hpy188I TCNGA 2 cut(s) 97, 234
Hpy188III TCNNGA 1 cut(s) 45
HpyAV CCTTC 2 cut(s) 436, 448
HpyCH4V TGCA 1 cut(s) 457
HpyF10VI GCNNNNNNNGC 3 cut(s) 14, 120, 338
HpyF3I CTNAG 1 cut(s) 274
Hsp92II CATG 3 cut(s) 340, 380, 412
HspAI GCGC 2 cut(s) 380, 396
Kzo9I GATC 6 cut(s) 20, 41, 92, 117, 229, 243
LmnI GCTCC 1 cut(s) 337
Lsp1109I GCAGC 1 cut(s) 328
LweI GCATC 1 cut(s) 216
MaeI CTAG 1 cut(s) 135
MaeIII GTNAC 1 cut(s) 310
MalI GATC 6 cut(s) 22, 43, 94, 119, 231, 245
MboI GATC 6 cut(s) 20, 41, 92, 117, 229, 243
MboII GAAGA 1 cut(s) 139
MflI RGATCY 1 cut(s) 92
MhlI GDGCHC 2 cut(s) 239, 376
MlsI TGGCCA 1 cut(s) 293
MluNI TGGCCA 1 cut(s) 293
MnlI CCTC 2 cut(s) 231, 266
Mox20I TGGCCA 1 cut(s) 293
MscI TGGCCA 1 cut(s) 293
MseI TTAA 1 cut(s) 50
MslI CAYNNNNRTG 1 cut(s) 407
Msp20I TGGCCA 1 cut(s) 293
MspI CCGG 6 cut(s) 39, 90, 182, 198, 227, 369
MspR9I CCNGG 2 cut(s) 169, 227
MvaI CCWGG 1 cut(s) 169
MvnI CGCG 1 cut(s) 123
MwoI GCNNNNNNNGC 3 cut(s) 14, 120, 338
NciI CCSGG 1 cut(s) 227
NcoI CCATGG 1 cut(s) 336
NdeII GATC 6 cut(s) 20, 41, 92, 117, 229, 243
NlaIII CATG 3 cut(s) 340, 380, 412
NlaIV GGNNCC 1 cut(s) 424
NmuCI GTSAC 1 cut(s) 310
PfeI GAWTC 1 cut(s) 215
PfoI TCCNGGA 1 cut(s) 225
PinAI ACCGGT 2 cut(s) 181, 368
PkrI GCNGC 3 cut(s) 7, 271, 343
Psp6I CCWGG 1 cut(s) 167
PspEI GGTNACC 1 cut(s) 310
PspGI CCWGG 1 cut(s) 167
PspN4I GGNNCC 1 cut(s) 424
PstNI CAGNNNCTG 1 cut(s) 329
PsuI RGATCY 1 cut(s) 92
RsaI GTAC 1 cut(s) 155
RsaNI GTAC 1 cut(s) 154
RseI CAYNNNNRTG 1 cut(s) 407
SaqAI TTAA 1 cut(s) 50
SatI GCNGC 3 cut(s) 6, 270, 342
Sau3AI GATC 6 cut(s) 20, 41, 92, 117, 229, 243
ScrFI CCNGG 2 cut(s) 169, 227
SduI GDGCHC 2 cut(s) 239, 376
SetI ASST 2 cut(s) 136, 312
SfaNI GCATC 1 cut(s) 216
SmiMI CAYNNNNRTG 1 cut(s) 407
SsiI CCGC 4 cut(s) 6, 121, 201, 270
SspMI CTAG 1 cut(s) 135
StyD4I CCNGG 2 cut(s) 167, 225
StyI CCWWGG 5 cut(s) 288, 294, 306, 336, 351
TaqI TCGA 1 cut(s) 116
TatI WGTACW 1 cut(s) 153
TauI GCSGC 2 cut(s) 8, 272
TfiI GAWTC 1 cut(s) 215
Tru1I TTAA 1 cut(s) 50
Tru9I TTAA 1 cut(s) 50
TscAI CASTG 1 cut(s) 244
TseFI GTSAC 1 cut(s) 310
TseI GCWGC 1 cut(s) 341
Tsp45I GTSAC 1 cut(s) 310
TspRI CASTG 1 cut(s) 244
XspI CTAG 1 cut(s) 135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.