Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0010582

Physical Location & Seq

Genomic Coordinates Reverse (-)

7672192 .. 7672954

Gene Structure 763 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1065900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGGAAATGAAGAAGATCTCCCTCGCCATCATCGTCCTTGCTGCCTTATTGAGCGTCGTCTTGGCTGCTGACCCAGTTCCCGCTACTCCCAAGGACCCAGCTGCCGCTGCTACTAAGGACCCAGCTGCCGCTGGTCCTAAGGAACCAGCTGCAGCTACTCCTAAGGCCTCAGCTACTGCCCCCGTAGGCTCAGCTGCTACCACCACAAGCACAGCATCCTCCCCTGACTCAGCTCATGCTCCTGCTCCTGCTCCATCAGGCGCCGCCAGCACCATGCCCATTGTCGGCTCTCTGGCCGGTGCCTTCCTCGTGACCTTCTTTGGCTATTACCTGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

113

Amino Acids

10.79

Weight (kDa)

6.52

Isoelectric Point (pI)

43.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010582)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g23090 FvH4_6g23100
malus_domestica	MD12G1065900.v1.1 MD12G1066000.v1.1
prunus_persica	Prupe.7G068400_v2.0.a1
pyrus_communis	pycom12g05720 pycom12g05740
rosa_chinensis	RchiOBHm_Chr3g0480951
rosa_laevigata	RLG00000023342 RLG00000023438 RLG00000023439
rosa_roxburghii	Rroxscaffold_6G00400860
rosa_rugosa	Rorug03G0188100 Rorug03G0188500
rosa_samantha	Rh3AG239300 Rh3BG273500 Rh3BG273700 Rh3CG269200 Rh3DG265100 Rh3DG265200
rosa_wichuraiana	Rw3G021410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	260, 299
AciI	CCGC	4 cut(s)	81, 105, 129, 264
AcoI	YGGCCR	1 cut(s)	294
AcyI	GRCGYC	1 cut(s)	261
AfiI	CCNNNNNNNGG	1 cut(s)	284
AluBI	AGCT	7 cut(s)	101, 125, 149, 155, 173, 194, 233
AluI	AGCT	7 cut(s)	101, 125, 149, 155, 173, 194, 233
AlwNI	CAGNNNCTG	1 cut(s)	176
AoxI	GGCC	2 cut(s)	165, 294
ApeKI	GCWGC	8 cut(s)	41, 65, 101, 107, 125, 149, 152, 194
AspLEI	GCGC	1 cut(s)	263
AspS9I	GGNCC	3 cut(s)	94, 118, 134
AvaII	GGWCC	3 cut(s)	94, 118, 134
AxyI	CCTNAGG	2 cut(s)	138, 162
BanI	GGYRCC	2 cut(s)	260, 299
BauI	CACGAG	1 cut(s)	308
BbvCI	CCTCAGC	1 cut(s)	169
BbvI	GCAGC	8 cut(s)	28, 52, 88, 94, 112, 136, 164, 181
BccI	CCATC	2 cut(s)	35, 262
BfmI	CTRYAG	2 cut(s)	150, 332
BfoI	RGCGCY	1 cut(s)	264
BglII	AGATCT	1 cut(s)	15
BlpI	GCTNAGC	1 cut(s)	190
Bme18I	GGWCC	3 cut(s)	94, 118, 134
BmgT120I	GGNCC	3 cut(s)	94, 118, 134
BmiI	GGNNCC	5 cut(s)	96, 120, 144, 262, 301
BmrI	ACTGGG	1 cut(s)	68
BmsI	GCATC	1 cut(s)	224
BmuI	ACTGGG	1 cut(s)	68
Bpu10I	CCTNAGC	1 cut(s)	169
Bpu1102I	GCTNAGC	1 cut(s)	190
BsaHI	GRCGYC	1 cut(s)	261
BsaJI	CCNNGG	1 cut(s)	90
Bsc4I	CCNNNNNNNGG	1 cut(s)	284
Bse118I	RCCGGY	1 cut(s)	296
Bse1I	ACTGG	1 cut(s)	74
Bse21I	CCTNAGG	2 cut(s)	138, 162
BseDI	CCNNGG	1 cut(s)	90
BseGI	GGATG	1 cut(s)	215
BseLI	CCNNNNNNNGG	1 cut(s)	284
BseMII	CTCAG	3 cut(s)	183, 204, 243
BseNI	ACTGG	1 cut(s)	74
BseXI	GCAGC	8 cut(s)	28, 52, 88, 94, 112, 136, 164, 181
BseYI	CCCAGC	2 cut(s)	97, 121
BshFI	GGCC	2 cut(s)	167, 296
BshNI	GGYRCC	2 cut(s)	260, 299
BsiSI	CCGG	1 cut(s)	297
BslI	CCNNNNNNNGG	1 cut(s)	284
BsnI	GGCC	2 cut(s)	167, 296
Bsp143I	GATC	1 cut(s)	15
Bsp1720I	GCTNAGC	1 cut(s)	190
BspACI	CCGC	4 cut(s)	81, 105, 129, 264
BspANI	GGCC	2 cut(s)	167, 296
BspCNI	CTCAG	3 cut(s)	182, 203, 242
BspLI	GGNNCC	5 cut(s)	96, 120, 144, 262, 301
BspMAI	CTGCAG	2 cut(s)	154, 336
BspT107I	GGYRCC	2 cut(s)	260, 299
BsrFI	RCCGGY	1 cut(s)	296
BsrI	ACTGG	1 cut(s)	74
BssAI	RCCGGY	1 cut(s)	296
BssECI	CCNNGG	1 cut(s)	90
BssMI	GATC	1 cut(s)	15
BssNI	GRCGYC	1 cut(s)	261
BssSI	CACGAG	1 cut(s)	308
BssT1I	CCWWGG	1 cut(s)	90
Bst2BI	CACGAG	1 cut(s)	308
BstACI	GRCGYC	1 cut(s)	261
BstC8I	GCNNGC	1 cut(s)	268
BstDEI	CTNAG	6 cut(s)	114, 138, 162, 169, 190, 229
BstF5I	GGATG	1 cut(s)	215
BstH2I	RGCGCY	1 cut(s)	264
BstHHI	GCGC	1 cut(s)	263
BstKTI	GATC	1 cut(s)	18
BstMBI	GATC	1 cut(s)	15
BstMWI	GCNNNNNNNGC	2 cut(s)	107, 267
BstSFI	CTRYAG	2 cut(s)	150, 332
BstV1I	GCAGC	8 cut(s)	28, 52, 88, 94, 112, 136, 164, 181
BstX2I	RGATCY	1 cut(s)	15
BstYI	RGATCY	1 cut(s)	15
Bsu36I	CCTNAGG	2 cut(s)	138, 162
BsuRI	GGCC	2 cut(s)	167, 296
BtsCI	GGATG	1 cut(s)	215
Cac8I	GCNNGC	1 cut(s)	268
CaiI	CAGNNNCTG	1 cut(s)	176
CfoI	GCGC	1 cut(s)	263
Cfr10I	RCCGGY	1 cut(s)	296
Cfr13I	GGNCC	3 cut(s)	94, 118, 134
CseI	GACGC	1 cut(s)	43
CviAII	CATG	2 cut(s)	236, 274
DdeI	CTNAG	6 cut(s)	114, 138, 162, 169, 190, 229
DinI	GGCGCC	1 cut(s)	262
DpnI	GATC	1 cut(s)	17
DpnII	GATC	1 cut(s)	15
EaeI	YGGCCR	1 cut(s)	294
Eco130I	CCWWGG	1 cut(s)	90
Eco147I	AGGCCT	1 cut(s)	167
Eco47I	GGWCC	3 cut(s)	94, 118, 134
Eco81I	CCTNAGG	2 cut(s)	138, 162
EcoO109I	RGGNCCY	2 cut(s)	94, 118
EcoT14I	CCWWGG	1 cut(s)	90
EgeI	GGCGCC	1 cut(s)	262
EheI	GGCGCC	1 cut(s)	262
ErhI	CCWWGG	1 cut(s)	90
FaeI	CATG	2 cut(s)	239, 277
FaiI	YATR	2 cut(s)	237, 275
FatI	CATG	2 cut(s)	235, 273
FauI	CCCGC	1 cut(s)	88
FokI	GGATG	1 cut(s)	202
GlaI	GCGC	1 cut(s)	262
GsaI	CCCAGC	2 cut(s)	101, 125
HaeII	RGCGCY	1 cut(s)	264
HaeIII	GGCC	2 cut(s)	167, 296
HapII	CCGG	1 cut(s)	297
HgaI	GACGC	1 cut(s)	43
HhaI	GCGC	1 cut(s)	263
Hin1I	GRCGYC	1 cut(s)	261
Hin1II	CATG	2 cut(s)	239, 277
Hin6I	GCGC	1 cut(s)	261
HinP1I	GCGC	1 cut(s)	261
HinfI	GANTC	1 cut(s)	227
HpaII	CCGG	1 cut(s)	297
Hpy188III	TCNNGA	1 cut(s)	310
Hpy99I	CGWCG	1 cut(s)	59
HpyAV	CCTTC	2 cut(s)	313, 325
HpyCH4V	TGCA	2 cut(s)	152, 334
HpyF10VI	GCNNNNNNNGC	2 cut(s)	107, 267
HpyF3I	CTNAG	6 cut(s)	114, 138, 162, 169, 190, 229
Hsp92I	GRCGYC	1 cut(s)	261
Hsp92II	CATG	2 cut(s)	239, 277
HspAI	GCGC	1 cut(s)	261
KasI	GGCGCC	1 cut(s)	260
Kzo9I	GATC	1 cut(s)	15
LmnI	GCTCC	3 cut(s)	244, 250, 256
Lsp1109I	GCAGC	8 cut(s)	28, 52, 88, 94, 112, 136, 164, 181
LweI	GCATC	1 cut(s)	224
MaeIII	GTNAC	1 cut(s)	310
MalI	GATC	1 cut(s)	17
MboI	GATC	1 cut(s)	15
MboII	GAAGA	2 cut(s)	22, 25
MflI	RGATCY	1 cut(s)	15
Mly113I	GGCGCC	1 cut(s)	261
MlyI	GAGTC	1 cut(s)	221
MnlI	CCTC	4 cut(s)	32, 178, 229, 317
MspA1I	CMGCKG	6 cut(s)	101, 107, 125, 131, 149, 194
MspI	CCGG	1 cut(s)	297
MwoI	GCNNNNNNNGC	2 cut(s)	107, 267
NarI	GGCGCC	1 cut(s)	261
NdeII	GATC	1 cut(s)	15
NlaIII	CATG	2 cut(s)	239, 277
NlaIV	GGNNCC	5 cut(s)	96, 120, 144, 262, 301
NmuCI	GTSAC	1 cut(s)	310
PceI	AGGCCT	1 cut(s)	167
PcsI	WCGNNNNNNNCGW	1 cut(s)	30
PleI	GAGTC	1 cut(s)	221
PluTI	GGCGCC	1 cut(s)	264
PpsI	GAGTC	1 cut(s)	221
PpuMI	RGGWCCY	2 cut(s)	94, 118
Psp5II	RGGWCCY	2 cut(s)	94, 118
PspFI	CCCAGC	2 cut(s)	97, 121
PspN4I	GGNNCC	5 cut(s)	96, 120, 144, 262, 301
PspPI	GGNCC	3 cut(s)	94, 118, 134
PspPPI	RGGWCCY	2 cut(s)	94, 118
PstI	CTGCAG	2 cut(s)	154, 336
PstNI	CAGNNNCTG	1 cut(s)	176
PsuI	RGATCY	1 cut(s)	15
PvuII	CAGCTG	4 cut(s)	101, 125, 149, 194
Sau3AI	GATC	1 cut(s)	15
Sau96I	GGNCC	3 cut(s)	94, 118, 134
SchI	GAGTC	1 cut(s)	221
SetI	ASST	9 cut(s)	103, 127, 151, 157, 175, 196, 235, 317, 333
SfaNI	GCATC	1 cut(s)	224
SfcI	CTRYAG	2 cut(s)	150, 332
SfoI	GGCGCC	1 cut(s)	262
SinI	GGWCC	3 cut(s)	94, 118, 134
SseBI	AGGCCT	1 cut(s)	167
SsiI	CCGC	4 cut(s)	81, 105, 129, 264
SspDI	GGCGCC	1 cut(s)	260
StuI	AGGCCT	1 cut(s)	167
StyI	CCWWGG	1 cut(s)	90
TauI	GCSGC	3 cut(s)	107, 131, 266
TseFI	GTSAC	1 cut(s)	310
TseI	GCWGC	8 cut(s)	41, 65, 101, 107, 125, 149, 152, 194
Tsp45I	GTSAC	1 cut(s)	310
TspDTI	ATGAA	1 cut(s)	23
VpaK11BI	GGWCC	3 cut(s)	94, 118, 134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.