Rorug03G0188100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0010582
Physical Location & Seq
Forward (+)
16383217 .. 16386789
3573 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0188100.1

Sequence Viewer

Length: 1305 bp
ATGGCGGAGAAGACCTTCAAGTACGTGATCCTCGGTGGCGGAGTCTCAGCTGGATATGCAGCTCGGGAGTTTGCCAAGCAGGGGGTTAAGCCAGGCGAACTAGCAGTGATTTCCAAAGAGGCGGTTGCTCCCTATGAACGTCCTGCACTCAGCAAGGCTTATCTCTTCCCTGAGTCTCCTGCTAGACTTCCAGGGTTTCATACCTGTGTTGGAAGTGGAGGGGAGAGATTGCTTCCTGATTGGTACAAAGAGAAAGGAATAGAGTTGATTCTTAACACTGAAATAGTCAAAGTAGATCTTGCTGGGAAGACTCTTGCTAGTGGAACTGGGGAATCCTTCAAGTTTCAGATTCTTATCATCGCAACTGGTTCAACTGTTGTAAGATTGTCAGATTTTGGTGTGAAAGGAGCTGATGCTAAAAACATTTTCTACTTGAGAGAAATTGATGATGCTGATAAGCTTAATGACGCAATTAAAGCAAAAAAGAATGGGAAAGCTGTGATTGTTGGAGGAGGATACATTGGTCTTGAGCTTGGTGCAGCATTGAGAATTAACAATTTAGATGTTACTATGGTGTACCCTGAACCGTGGTGCATGCCTCGGCTTTTCACTTCTGGTATTGCTGCCTTCTATGAGGGTTATTATGCAAACAAGGGAGTTAAAATCGTCAAGGGAACAGTTGCTGTTGGTTTTACCTCTGATTCAAATGGAGAGGTCAAGGAAGTGCATCTAAAGGATGGCACTGTGCTTGAAGCTGACATTGTTGTTGTTGGTGTTGGGGGAAGGCCCCTAACAACCTTGTTCAAGGGACAAGTTGAAGAGGAGAAAGGTGGAATTAAGACGGATACATTCTTTAAAACAAGTGTTCCTGATGTATATGCTGTGGGTGATGTTGCCACTTTCCCTTTGAAGTTGTACACTGAGAACAGAAGAGTTGAGCATGTTGACCATGCACGCAAATCTGCAGAGCAGGCCGTAAAGGCCATCAAGGCAAGCGAGGAGGGAAAGACAGTTGAGGTCTATGACTACCTTCCATTCTTCTATTCTCGCTCCTTTGATCTGTCATGGCAATTCTACGGCGATAATGTTGGTGAGACCGTGCTCTTCGGAGACAACAATCCCACCTCACCAAAGCCCAAGTTTGGAACCTACTGGATTAAAGACGGTAAGGTGGTCGGTGCATTTCTAGAGGCTGGCACTCCTGAGGAAAACCAGGCTATCGCCAAGGTTGCAAAGCTCCAGCCTCTTGTTGAGAGTTTAGATCAGCTTGCAAAGGAAGGTCTTTCTTTTGCTAGTAAGATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

434

Amino Acids

47.03

Weight (kDa)

6.22

Isoelectric Point (pI)

27.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pyr_redox_2 PF07992 6 - 322 9.4e-61 Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox PF00070 165 - 247 1.7e-13 Pyridine nucleotide-disulphide oxidoreductase
MDHAR3-like_C PF21791 344 - 431 2.8e-43 Monodehydroascorbate reductase 3-like, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 5, 39, 122
AclWI GGATC 1 cut(s) 22
AfaI GTAC 4 cut(s) 23, 245, 578, 917
AfiI CCNNNNNNNGG 2 cut(s) 81, 1142
AgsI TTSAA 8 cut(s) 19, 340, 372, 705, 752, 805, 818, 910
AjnI CCWGG 3 cut(s) 91, 190, 1212
AluBI AGCT 9 cut(s) 50, 62, 410, 460, 497, 532, 755, 1237, 1267
AluI AGCT 9 cut(s) 50, 62, 410, 460, 497, 532, 755, 1237, 1267
Alw21I GWGCWC 1 cut(s) 1104
Alw26I GTCTC 4 cut(s) 49, 180, 1088, 1104
AlwI GGATC 1 cut(s) 22
AlwNI CAGNNNCTG 1 cut(s) 683
Ama87I CYCGRG 1 cut(s) 63
AoxI GGCC 3 cut(s) 785, 972, 981
ApeKI GCWGC 3 cut(s) 59, 539, 623
Asp700I GAANNNNTTC 1 cut(s) 14
AspS9I GGNCC 1 cut(s) 786
AsuHPI GGTGA 3 cut(s) 899, 1103, 1119
AvaI CYCGRG 1 cut(s) 63
AxyI CCTNAGG 1 cut(s) 1203
BaeI ACNNNNGTAYC 2 cut(s) 508, 541
BbsI GAAGAC 2 cut(s) 17, 314
Bbv12I GWGCWC 1 cut(s) 1104
BbvI GCAGC 3 cut(s) 71, 551, 610
BccI CCATC 2 cut(s) 731, 992
BceAI ACGGC 2 cut(s) 959, 1093
BciT130I CCWGG 3 cut(s) 93, 192, 1214
BciVI GTATCC 2 cut(s) 509, 838
BcoDI GTCTC 4 cut(s) 49, 180, 1088, 1104
BfaI CTAG 5 cut(s) 101, 183, 318, 1187, 1293
BfmI CTRYAG 1 cut(s) 963
BfuI GTATCC 2 cut(s) 509, 838
BglI GCCNNNNNGGC 2 cut(s) 980, 989
BglII AGATCT 2 cut(s) 295, 1299
BisI GCNGC 3 cut(s) 60, 540, 624
BlsI GCNGC 3 cut(s) 61, 541, 625
Bme1390I CCNGG 3 cut(s) 93, 192, 1214
BmeT110I CYCGRG 1 cut(s) 63
BmgT120I GGNCC 1 cut(s) 786
BmiI GGNNCC 2 cut(s) 788, 1147
BmrFI CCNGG 3 cut(s) 93, 192, 1214
BmrI ACTGGG 1 cut(s) 336
BmsI GCATC 3 cut(s) 403, 439, 736
BmuI ACTGGG 1 cut(s) 336
BpiI GAAGAC 2 cut(s) 17, 314
BpmI CTGGAG 1 cut(s) 1223
BpuEI CTTGAG 2 cut(s) 454, 548
BsaAI YACGTR 1 cut(s) 25
BsaBI GATNNNNATC 1 cut(s) 353
BsaI GGTCTC 1 cut(s) 1088
BsaJI CCNNGG 5 cut(s) 31, 191, 587, 599, 1224
Bsc4I CCNNNNNNNGG 2 cut(s) 81, 1142
Bse1I ACTGG 3 cut(s) 331, 370, 1157
Bse21I CCTNAGG 1 cut(s) 1203
Bse8I GATNNNNATC 1 cut(s) 353
BseBI CCWGG 3 cut(s) 93, 192, 1214
BseDI CCNNGG 5 cut(s) 31, 191, 587, 599, 1224
BseGI GGATG 1 cut(s) 742
BseJI GATNNNNATC 1 cut(s) 353
BseLI CCNNNNNNNGG 2 cut(s) 81, 1142
BseMII CTCAG 5 cut(s) 60, 162, 163, 912, 1194
BseNI ACTGG 3 cut(s) 331, 370, 1157
BseRI GAGGAG 3 cut(s) 525, 836, 1013
BseXI GCAGC 3 cut(s) 71, 551, 610
BseYI CCCAGC 1 cut(s) 302
BsgI GTGCAG 2 cut(s) 129, 558
BshFI GGCC 3 cut(s) 787, 974, 983
BsiHKAI GWGCWC 1 cut(s) 1104
BsiHKCI CYCGRG 1 cut(s) 63
BslFI GGGAC 1 cut(s) 822
BslI CCNNNNNNNGG 2 cut(s) 81, 1142
BsmAI GTCTC 4 cut(s) 49, 180, 1088, 1104
BsmFI GGGAC 1 cut(s) 822
BsnI GGCC 3 cut(s) 787, 974, 983
Bso31I GGTCTC 1 cut(s) 1088
BsoBI CYCGRG 1 cut(s) 63
Bsp1286I GDGCHC 1 cut(s) 1104
Bsp1407I TGTACA 1 cut(s) 915
Bsp143I GATC 5 cut(s) 27, 295, 1057, 1261, 1299
BspACI CCGC 3 cut(s) 5, 39, 122
BspANI GGCC 3 cut(s) 787, 974, 983
BspCNI CTCAG 5 cut(s) 59, 162, 163, 913, 1195
BspLI GGNNCC 2 cut(s) 788, 1147
BspMAI CTGCAG 1 cut(s) 967
BspPI GGATC 1 cut(s) 22
BspQI GCTCTTC 1 cut(s) 1109
BspTNI GGTCTC 1 cut(s) 1088
BsrGI TGTACA 1 cut(s) 915
BsrI ACTGG 3 cut(s) 331, 370, 1157
BssECI CCNNGG 5 cut(s) 31, 191, 587, 599, 1224
BssMI GATC 5 cut(s) 27, 295, 1057, 1261, 1299
BssT1I CCWWGG 1 cut(s) 1224
Bst2UI CCWGG 3 cut(s) 93, 192, 1214
Bst4CI ACNGT 7 cut(s) 376, 588, 679, 745, 1012, 1099, 1166
Bst6I CTCTTC 4 cut(s) 170, 813, 925, 1109
BstAUI TGTACA 1 cut(s) 915
BstBAI YACGTR 1 cut(s) 25
BstC8I GCNNGC 6 cut(s) 596, 955, 972, 994, 1195, 1269
BstDEI CTNAG 5 cut(s) 46, 149, 171, 921, 1203
BstDSI CCRYGG 1 cut(s) 587
BstF5I GGATG 1 cut(s) 742
BstKTI GATC 5 cut(s) 30, 298, 1060, 1264, 1302
BstMAI GTCTC 4 cut(s) 49, 180, 1088, 1104
BstMBI GATC 5 cut(s) 27, 295, 1057, 1261, 1299
BstMWI GCNNNNNNNGC 6 cut(s) 56, 476, 971, 980, 989, 1229
BstNI CCWGG 3 cut(s) 93, 192, 1214
BstNSI RCATGY 2 cut(s) 598, 944
BstSCI CCNGG 3 cut(s) 91, 190, 1212
BstSFI CTRYAG 1 cut(s) 963
BstV1I GCAGC 3 cut(s) 71, 551, 610
BstV2I GAAGAC 2 cut(s) 17, 314
BstX2I RGATCY 2 cut(s) 295, 1299
BstYI RGATCY 2 cut(s) 295, 1299
Bsu36I CCTNAGG 1 cut(s) 1203
BsuI GTATCC 2 cut(s) 509, 838
BsuRI GGCC 3 cut(s) 787, 974, 983
BtgI CCRYGG 1 cut(s) 587
BtgZI GCGATG 1 cut(s) 343
BtsCI GGATG 1 cut(s) 742
BtsI GCAGTG 1 cut(s) 111
BtsIMutI CAGTG 4 cut(s) 111, 276, 741, 918
Cac8I GCNNGC 6 cut(s) 596, 955, 972, 994, 1195, 1269
CaiI CAGNNNCTG 1 cut(s) 683
Cfr13I GGNCC 1 cut(s) 786
CseI GACGC 1 cut(s) 476
Csp6I GTAC 4 cut(s) 22, 244, 577, 916
CviAII CATG 4 cut(s) 595, 941, 950, 1065
CviQI GTAC 4 cut(s) 22, 244, 577, 916
DdeI CTNAG 5 cut(s) 46, 149, 171, 921, 1203
DpnI GATC 5 cut(s) 29, 297, 1059, 1263, 1301
DpnII GATC 5 cut(s) 27, 295, 1057, 1261, 1299
DraI TTTAAA 1 cut(s) 856
Eam1104I CTCTTC 4 cut(s) 170, 813, 925, 1109
EarI CTCTTC 4 cut(s) 170, 813, 925, 1109
EciI GGCGGA 2 cut(s) 20, 54
Eco130I CCWWGG 1 cut(s) 1224
Eco31I GGTCTC 1 cut(s) 1088
Eco81I CCTNAGG 1 cut(s) 1203
Eco88I CYCGRG 1 cut(s) 63
EcoO109I RGGNCCY 1 cut(s) 786
EcoRII CCWGG 3 cut(s) 91, 190, 1212
EcoT14I CCWWGG 1 cut(s) 1224
ErhI CCWWGG 1 cut(s) 1224
FaeI CATG 4 cut(s) 598, 944, 953, 1068
FalI AAGNNNNNCTT 2 cut(s) 282, 314
FaqI GGGAC 1 cut(s) 822
FatI CATG 4 cut(s) 594, 940, 949, 1064
Fnu4HI GCNGC 3 cut(s) 60, 540, 624
FokI GGATG 1 cut(s) 749
Fsp4HI GCNGC 3 cut(s) 60, 540, 624
FspBI CTAG 5 cut(s) 101, 183, 318, 1187, 1293
GluI GCNGC 3 cut(s) 60, 540, 624
GsaI CCCAGC 1 cut(s) 306
GsuI CTGGAG 1 cut(s) 1223
HaeIII GGCC 3 cut(s) 787, 974, 983
HgaI GACGC 1 cut(s) 476
Hin1II CATG 4 cut(s) 598, 944, 953, 1068
HincII GTYRAC 1 cut(s) 946
HindII GTYRAC 1 cut(s) 946
HindIII AAGCTT 1 cut(s) 458
HinfI GANTC 7 cut(s) 42, 173, 268, 310, 332, 349, 701
HphI GGTGA 3 cut(s) 899, 1103, 1119
Hpy166II GTNNAC 3 cut(s) 577, 918, 946
Hpy188I TCNGA 4 cut(s) 348, 391, 700, 1109
Hpy188III TCNNGA 6 cut(s) 65, 236, 527, 869, 1187, 1202
Hpy8I GTNNAC 3 cut(s) 577, 918, 946
HpyAV CCTTC 6 cut(s) 25, 346, 637, 777, 1040, 1271
HpyCH4III ACNGT 7 cut(s) 376, 588, 679, 745, 1012, 1099, 1166
HpyCH4IV ACGT 2 cut(s) 24, 139
HpyF10VI GCNNNNNNNGC 6 cut(s) 56, 476, 971, 980, 989, 1229
HpyF3I CTNAG 5 cut(s) 46, 149, 171, 921, 1203
HpySE526I ACGT 2 cut(s) 24, 139
Hsp92II CATG 4 cut(s) 598, 944, 953, 1068
Kzo9I GATC 5 cut(s) 27, 295, 1057, 1261, 1299
LguI GCTCTTC 1 cut(s) 1109
LmnI GCTCC 4 cut(s) 133, 407, 1055, 1242
Lsp1109I GCAGC 3 cut(s) 71, 551, 610
LweI GCATC 3 cut(s) 403, 439, 736
MaeI CTAG 5 cut(s) 101, 183, 318, 1187, 1293
MaeII ACGT 2 cut(s) 24, 139
MaeIII GTNAC 1 cut(s) 565
MalI GATC 5 cut(s) 29, 297, 1059, 1263, 1301
MboI GATC 5 cut(s) 27, 295, 1057, 1261, 1299
MboII GAAGA 7 cut(s) 22, 157, 319, 830, 942, 1030, 1096
MflI RGATCY 2 cut(s) 295, 1299
MhlI GDGCHC 1 cut(s) 1104
MluCI AATT 6 cut(s) 441, 471, 549, 556, 834, 1070
MlyI GAGTC 3 cut(s) 51, 182, 304
MmeI TCCRAC 2 cut(s) 190, 487
MroXI GAANNNNTTC 1 cut(s) 14
MseI TTAA 9 cut(s) 87, 273, 462, 474, 552, 660, 837, 855, 1158
MslI CAYNNNNRTG 1 cut(s) 204
MspA1I CMGCKG 1 cut(s) 50
MspR9I CCNGG 3 cut(s) 93, 192, 1214
MvaI CCWGG 3 cut(s) 93, 192, 1214
MwoI GCNNNNNNNGC 6 cut(s) 56, 476, 971, 980, 989, 1229
NdeII GATC 5 cut(s) 27, 295, 1057, 1261, 1299
NlaIII CATG 4 cut(s) 598, 944, 953, 1068
NlaIV GGNNCC 2 cut(s) 788, 1147
NmeAIII GCCGAG 1 cut(s) 580
NspI RCATGY 2 cut(s) 598, 944
PaeI GCATGC 1 cut(s) 598
PciSI GCTCTTC 1 cut(s) 1109
PdmI GAANNNNTTC 1 cut(s) 14
PfeI GAWTC 4 cut(s) 268, 332, 349, 701
PkrI GCNGC 3 cut(s) 61, 541, 625
PleI GAGTC 3 cut(s) 50, 181, 304
PpsI GAGTC 3 cut(s) 50, 181, 304
Ppu21I YACGTR 1 cut(s) 25
Psp6I CCWGG 3 cut(s) 91, 190, 1212
PspFI CCCAGC 1 cut(s) 302
PspGI CCWGG 3 cut(s) 91, 190, 1212
PspN4I GGNNCC 2 cut(s) 788, 1147
PspPI GGNCC 1 cut(s) 786
PstI CTGCAG 1 cut(s) 967
PstNI CAGNNNCTG 1 cut(s) 683
PsuI RGATCY 2 cut(s) 295, 1299
PvuII CAGCTG 1 cut(s) 50
RsaI GTAC 4 cut(s) 23, 245, 578, 917
RsaNI GTAC 4 cut(s) 22, 244, 577, 916
RseI CAYNNNNRTG 1 cut(s) 204
SapI GCTCTTC 1 cut(s) 1109
SaqAI TTAA 9 cut(s) 87, 273, 462, 474, 552, 660, 837, 855, 1158
SatI GCNGC 3 cut(s) 60, 540, 624
Sau3AI GATC 5 cut(s) 27, 295, 1057, 1261, 1299
Sau96I GGNCC 1 cut(s) 786
SchI GAGTC 3 cut(s) 51, 182, 304
ScrFI CCNGG 3 cut(s) 93, 192, 1214
SduI GDGCHC 1 cut(s) 1104
SfaNI GCATC 3 cut(s) 403, 439, 736
SfcI CTRYAG 1 cut(s) 963
SfiI GGCCNNNNNGGCC 1 cut(s) 980
SmiMI CAYNNNNRTG 1 cut(s) 204
SmlI CTYRAG 2 cut(s) 433, 527
SmoI CTYRAG 2 cut(s) 433, 527
SphI GCATGC 1 cut(s) 598
Sse9I AATT 6 cut(s) 441, 471, 549, 556, 834, 1070
SsiI CCGC 3 cut(s) 5, 39, 122
SspMI CTAG 5 cut(s) 101, 183, 318, 1187, 1293
StyD4I CCNGG 3 cut(s) 91, 190, 1212
StyI CCWWGG 1 cut(s) 1224
TaaI ACNGT 7 cut(s) 376, 588, 679, 745, 1012, 1099, 1166
TaiI ACGT 2 cut(s) 27, 142
TasI AATT 6 cut(s) 441, 471, 549, 556, 834, 1070
TatI WGTACW 1 cut(s) 915
TfiI GAWTC 4 cut(s) 268, 332, 349, 701
Tru1I TTAA 9 cut(s) 87, 273, 462, 474, 552, 660, 837, 855, 1158
Tru9I TTAA 9 cut(s) 87, 273, 462, 474, 552, 660, 837, 855, 1158
TscAI CASTG 4 cut(s) 111, 283, 748, 925
TseI GCWGC 3 cut(s) 59, 539, 623
TspDTI ATGAA 2 cut(s) 150, 188
TspGWI ACGGA 1 cut(s) 857
TspRI CASTG 4 cut(s) 111, 283, 748, 925
XbaI TCTAGA 1 cut(s) 1186
XceI RCATGY 2 cut(s) 598, 944
XmnI GAANNNNTTC 1 cut(s) 14
XspI CTAG 5 cut(s) 101, 183, 318, 1187, 1293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.