RLG00000023438

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0010582
Physical Location & Seq
Forward (+)
23774901 .. 23777612
2712 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023438

Sequence Viewer

Length: 591 bp
ATGTCACAAGTGGCCATGCTTGCTGCTCCCTTCGATCCTCGAGATGCTAACAAAATCCTCCTCAGTGAAAACGGCATCGTTATAGGCCAAGAGCAAAGCACGAGTCAGCTTTTAGACCGACATGATCTTCCTGGCCTCGTTTTTTTGGCGGAGGCAGAGGTTATCGCTGATCTTGTGCTTCTTGATTGGAAGCGAGTGGAAGTAGAGCTAGAGCTACCCCAGGAAGACATCTTGCTTACTCCTCAGACCTGCAAGAAACACCCAAGCAGAAAAAGAAATCGTTCTCTTATTCATCTCTATTCTCTAAAGAACTCAACTTATTATCACTTCATTATGGACATGAAGAAGATATCCGTCGCCATCATTGTCATTGCAGCCTTCATGAGCCTCGTCGTGGCTGCAAAGGAGACAGGCAAGCCAGCAGCGGCCCCCAAGGCCAAGTCTCCAACAGCCTCATCTCCCGCCGGTACTCCTAAGGAAGGAGGGGCTCATGCCCCTGCCCCATCAGGCGCCGTCCCCACTACCTTGTCCACTGTTGAATCTTTCTTCAGCACCTTCCTTTTGTCCGTCTTTACCTATTACATGCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

197

Amino Acids

21.35

Weight (kDa)

6.97

Isoelectric Point (pI)

53.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 257
AccB1I GGYRCC 1 cut(s) 509
AciI CCGC 3 cut(s) 149, 425, 462
AclWI GGATC 1 cut(s) 29
AcoI YGGCCR 1 cut(s) 12
AcuI CTGAAG 1 cut(s) 532
AcyI GRCGYC 1 cut(s) 510
AfaI GTAC 1 cut(s) 469
AfiI CCNNNNNNNGG 2 cut(s) 394, 479
AgsI TTSAA 1 cut(s) 539
AjnI CCWGG 2 cut(s) 130, 219
AluBI AGCT 3 cut(s) 109, 208, 214
AluI AGCT 3 cut(s) 109, 208, 214
Alw26I GTCTC 2 cut(s) 401, 447
AlwI GGATC 1 cut(s) 29
Ama87I CYCGRG 1 cut(s) 39
AoxI GGCC 5 cut(s) 12, 85, 133, 426, 435
ApeKI GCWGC 4 cut(s) 23, 374, 398, 422
ArsI GACNNNNNNTTYG 2 cut(s) 88, 120
Asp700I GAANNNNTTC 1 cut(s) 280
AspLEI GCGC 1 cut(s) 512
AspS9I GGNCC 1 cut(s) 427
AvaI CYCGRG 1 cut(s) 39
AxyI CCTNAGG 1 cut(s) 474
BalI TGGCCA 1 cut(s) 14
BanI GGYRCC 1 cut(s) 509
BanII GRGCYC 1 cut(s) 490
BauI CACGAG 1 cut(s) 100
BbsI GAAGAC 1 cut(s) 231
BbvI GCAGC 4 cut(s) 10, 385, 386, 434
BccI CCATC 2 cut(s) 368, 511
BceAI ACGGC 2 cut(s) 88, 497
BciT130I CCWGG 2 cut(s) 132, 221
BcoDI GTCTC 2 cut(s) 401, 447
BfaI CTAG 1 cut(s) 209
BfoI RGCGCY 1 cut(s) 513
BfuAI ACCTGC 1 cut(s) 257
BglI GCCNNNNNGGC 1 cut(s) 434
BisI GCNGC 5 cut(s) 24, 375, 399, 423, 426
BlsI GCNGC 5 cut(s) 25, 376, 400, 424, 427
Bme1390I CCNGG 2 cut(s) 132, 221
BmeT110I CYCGRG 1 cut(s) 39
BmgT120I GGNCC 1 cut(s) 427
BmiI GGNNCC 2 cut(s) 429, 511
BmrFI CCNGG 2 cut(s) 132, 221
BmsI GCATC 2 cut(s) 34, 84
BpiI GAAGAC 1 cut(s) 231
BsaHI GRCGYC 1 cut(s) 510
BsaJI CCNNGG 2 cut(s) 219, 432
Bsc4I CCNNNNNNNGG 2 cut(s) 394, 479
Bse118I RCCGGY 1 cut(s) 464
Bse21I CCTNAGG 1 cut(s) 474
Bse3DI GCAATG 1 cut(s) 369
BseBI CCWGG 2 cut(s) 132, 221
BseDI CCNNGG 2 cut(s) 219, 432
BseLI CCNNNNNNNGG 2 cut(s) 394, 479
BseMI GCAATG 1 cut(s) 369
BseMII CTCAG 2 cut(s) 76, 257
BseRI GAGGAG 2 cut(s) 50, 231
BseXI GCAGC 4 cut(s) 10, 385, 386, 434
BshFI GGCC 5 cut(s) 14, 87, 135, 428, 437
BshNI GGYRCC 1 cut(s) 509
BsiHKCI CYCGRG 1 cut(s) 39
BsiSI CCGG 1 cut(s) 465
BslFI GGGAC 1 cut(s) 500
BslI CCNNNNNNNGG 2 cut(s) 394, 479
BsmAI GTCTC 2 cut(s) 401, 447
BsmFI GGGAC 1 cut(s) 500
BsnI GGCC 5 cut(s) 14, 87, 135, 428, 437
BsoBI CYCGRG 1 cut(s) 39
Bsp1286I GDGCHC 1 cut(s) 490
Bsp143I GATC 3 cut(s) 34, 124, 169
BspACI CCGC 3 cut(s) 149, 425, 462
BspANI GGCC 5 cut(s) 14, 87, 135, 428, 437
BspCNI CTCAG 2 cut(s) 75, 256
BspHI TCATGA 1 cut(s) 381
BspLI GGNNCC 2 cut(s) 429, 511
BspMI ACCTGC 1 cut(s) 257
BspPI GGATC 1 cut(s) 29
BspT107I GGYRCC 1 cut(s) 509
BsrDI GCAATG 1 cut(s) 369
BsrFI RCCGGY 1 cut(s) 464
BssAI RCCGGY 1 cut(s) 464
BssECI CCNNGG 2 cut(s) 219, 432
BssMI GATC 3 cut(s) 34, 124, 169
BssNI GRCGYC 1 cut(s) 510
BssSI CACGAG 1 cut(s) 100
BssT1I CCWWGG 1 cut(s) 432
Bst2BI CACGAG 1 cut(s) 100
Bst2UI CCWGG 2 cut(s) 132, 221
Bst4CI ACNGT 1 cut(s) 535
BstACI GRCGYC 1 cut(s) 510
BstC8I GCNNGC 3 cut(s) 21, 416, 420
BstDEI CTNAG 3 cut(s) 62, 243, 474
BstENI CCTNNNNNAGG 1 cut(s) 477
BstH2I RGCGCY 1 cut(s) 513
BstHHI GCGC 1 cut(s) 512
BstKTI GATC 3 cut(s) 37, 127, 172
BstMAI GTCTC 2 cut(s) 401, 447
BstMBI GATC 3 cut(s) 34, 124, 169
BstMWI GCNNNNNNNGC 2 cut(s) 20, 434
BstNI CCWGG 2 cut(s) 132, 221
BstNSI RCATGY 1 cut(s) 586
BstSCI CCNGG 2 cut(s) 130, 219
BstV1I GCAGC 4 cut(s) 10, 385, 386, 434
BstV2I GAAGAC 1 cut(s) 231
Bsu36I CCTNAGG 1 cut(s) 474
BsuRI GGCC 5 cut(s) 14, 87, 135, 428, 437
BtsIMutI CAGTG 2 cut(s) 70, 531
BveI ACCTGC 1 cut(s) 257
Cac8I GCNNGC 3 cut(s) 21, 416, 420
CciI TCATGA 1 cut(s) 381
CfoI GCGC 1 cut(s) 512
Cfr10I RCCGGY 1 cut(s) 464
Cfr13I GGNCC 1 cut(s) 427
Csp6I GTAC 1 cut(s) 468
CviAII CATG 6 cut(s) 16, 122, 340, 382, 491, 583
CviQI GTAC 1 cut(s) 468
DdeI CTNAG 3 cut(s) 62, 243, 474
DinI GGCGCC 1 cut(s) 511
DpnI GATC 3 cut(s) 36, 126, 171
DpnII GATC 3 cut(s) 34, 124, 169
EaeI YGGCCR 1 cut(s) 12
EciI GGCGGA 1 cut(s) 164
Eco130I CCWWGG 1 cut(s) 432
Eco24I GRGCYC 1 cut(s) 490
Eco32I GATATC 1 cut(s) 351
Eco57I CTGAAG 1 cut(s) 532
Eco81I CCTNAGG 1 cut(s) 474
Eco88I CYCGRG 1 cut(s) 39
EcoNI CCTNNNNNAGG 1 cut(s) 477
EcoRII CCWGG 2 cut(s) 130, 219
EcoRV GATATC 1 cut(s) 351
EcoT14I CCWWGG 1 cut(s) 432
EcoT38I GRGCYC 1 cut(s) 490
EgeI GGCGCC 1 cut(s) 511
EheI GGCGCC 1 cut(s) 511
ErhI CCWWGG 1 cut(s) 432
FaeI CATG 6 cut(s) 19, 125, 343, 385, 494, 586
FaiI YATR 8 cut(s) 17, 83, 123, 335, 341, 383, 492, 584
FaqI GGGAC 1 cut(s) 500
FatI CATG 6 cut(s) 15, 121, 339, 381, 490, 582
FauI CCCGC 1 cut(s) 469
Fnu4HI GCNGC 5 cut(s) 24, 375, 399, 423, 426
FriOI GRGCYC 1 cut(s) 490
Fsp4HI GCNGC 5 cut(s) 24, 375, 399, 423, 426
FspBI CTAG 1 cut(s) 209
GlaI GCGC 1 cut(s) 511
GluI GCNGC 5 cut(s) 24, 375, 399, 423, 426
HaeII RGCGCY 1 cut(s) 513
HaeIII GGCC 5 cut(s) 14, 87, 135, 428, 437
HapII CCGG 1 cut(s) 465
HhaI GCGC 1 cut(s) 512
Hin1I GRCGYC 1 cut(s) 510
Hin1II CATG 6 cut(s) 19, 125, 343, 385, 494, 586
Hin6I GCGC 1 cut(s) 510
HinP1I GCGC 1 cut(s) 510
HinfI GANTC 2 cut(s) 103, 539
HpaII CCGG 1 cut(s) 465
Hpy166II GTNNAC 1 cut(s) 531
Hpy188I TCNGA 1 cut(s) 246
Hpy188III TCNNGA 3 cut(s) 41, 182, 382
Hpy8I GTNNAC 1 cut(s) 531
Hpy99I CGWCG 2 cut(s) 359, 395
HpyAV CCTTC 4 cut(s) 40, 388, 473, 565
HpyCH4III ACNGT 1 cut(s) 535
HpyCH4V TGCA 4 cut(s) 252, 374, 401, 586
HpyF10VI GCNNNNNNNGC 2 cut(s) 20, 434
HpyF3I CTNAG 3 cut(s) 62, 243, 474
Hsp92I GRCGYC 1 cut(s) 510
Hsp92II CATG 6 cut(s) 19, 125, 343, 385, 494, 586
HspAI GCGC 1 cut(s) 510
KasI GGCGCC 1 cut(s) 509
Kzo9I GATC 3 cut(s) 34, 124, 169
LmnI GCTCC 1 cut(s) 31
Lsp1109I GCAGC 4 cut(s) 10, 385, 386, 434
LweI GCATC 2 cut(s) 34, 84
MaeI CTAG 1 cut(s) 209
MaeIII GTNAC 1 cut(s) 3
MalI GATC 3 cut(s) 36, 126, 171
MboI GATC 3 cut(s) 34, 124, 169
MboII GAAGA 5 cut(s) 119, 236, 355, 358, 538
MhlI GDGCHC 1 cut(s) 490
MlsI TGGCCA 1 cut(s) 14
MluNI TGGCCA 1 cut(s) 14
Mly113I GGCGCC 1 cut(s) 510
MlyI GAGTC 1 cut(s) 112
MmeI TCCRAC 1 cut(s) 470
Mox20I TGGCCA 1 cut(s) 14
MroXI GAANNNNTTC 1 cut(s) 280
MscI TGGCCA 1 cut(s) 14
Msp20I TGGCCA 1 cut(s) 14
MspA1I CMGCKG 1 cut(s) 425
MspI CCGG 1 cut(s) 465
MspR9I CCNGG 2 cut(s) 132, 221
MvaI CCWGG 2 cut(s) 132, 221
MwoI GCNNNNNNNGC 2 cut(s) 20, 434
NarI GGCGCC 1 cut(s) 510
NdeII GATC 3 cut(s) 34, 124, 169
NlaIII CATG 6 cut(s) 19, 125, 343, 385, 494, 586
NlaIV GGNNCC 2 cut(s) 429, 511
NmuCI GTSAC 1 cut(s) 3
NspI RCATGY 1 cut(s) 586
PaeR7I CTCGAG 1 cut(s) 39
PagI TCATGA 1 cut(s) 381
PdmI GAANNNNTTC 1 cut(s) 280
PfeI GAWTC 1 cut(s) 539
PkrI GCNGC 5 cut(s) 25, 376, 400, 424, 427
PleI GAGTC 1 cut(s) 111
PluTI GGCGCC 1 cut(s) 513
PpsI GAGTC 1 cut(s) 111
Psp6I CCWGG 2 cut(s) 130, 219
PspGI CCWGG 2 cut(s) 130, 219
PspN4I GGNNCC 2 cut(s) 429, 511
PspPI GGNCC 1 cut(s) 427
RsaI GTAC 1 cut(s) 469
RsaNI GTAC 1 cut(s) 468
SatI GCNGC 5 cut(s) 24, 375, 399, 423, 426
Sau3AI GATC 3 cut(s) 34, 124, 169
Sau96I GGNCC 1 cut(s) 427
SchI GAGTC 1 cut(s) 112
ScrFI CCNGG 2 cut(s) 132, 221
SduI GDGCHC 1 cut(s) 490
SetI ASST 8 cut(s) 111, 162, 210, 216, 251, 527, 557, 578
SfaNI GCATC 2 cut(s) 34, 84
SfiI GGCCNNNNNGGCC 1 cut(s) 434
SfoI GGCGCC 1 cut(s) 511
Sfr274I CTCGAG 1 cut(s) 39
SlaI CTCGAG 1 cut(s) 39
SmlI CTYRAG 1 cut(s) 39
SmoI CTYRAG 1 cut(s) 39
SsiI CCGC 3 cut(s) 149, 425, 462
SspDI GGCGCC 1 cut(s) 509
SspMI CTAG 1 cut(s) 209
StyD4I CCNGG 2 cut(s) 130, 219
StyI CCWWGG 1 cut(s) 432
TaaI ACNGT 1 cut(s) 535
TaqI TCGA 2 cut(s) 33, 40
TaqII GACCGA 1 cut(s) 132
TauI GCSGC 1 cut(s) 428
TfiI GAWTC 1 cut(s) 539
TscAI CASTG 2 cut(s) 70, 538
TseFI GTSAC 1 cut(s) 3
TseI GCWGC 4 cut(s) 23, 374, 398, 422
Tsp45I GTSAC 1 cut(s) 3
TspDTI ATGAA 4 cut(s) 281, 319, 356, 370
TspGWI ACGGA 2 cut(s) 343, 556
TspRI CASTG 2 cut(s) 70, 538
XagI CCTNNNNNAGG 1 cut(s) 477
XceI RCATGY 1 cut(s) 586
XhoI CTCGAG 1 cut(s) 39
XmnI GAANNNNTTC 1 cut(s) 280
XspI CTAG 1 cut(s) 209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.