Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0010582

Physical Location & Seq

Genomic Coordinates Reverse (-)

26698696 .. 26705015

Gene Structure 6320 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG273700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGGATATGAAGAAGATCTCCGTCGCCATCATTGTCATTGCAGCCTTCATGAGCCTCGTCGTGGCTGCAAAGGAGACAGGCAAGCCAGCAGCGGCCCCCAAGGCCAAGTCTCCAACAGCCTCATCTCCTAAGGAAGGAGGGGCTCATGCCCCTGCCCCATCAGGCGCCGTCCCCACTACCTTGTCCATTGTTGAATCTTTCTTCAGCACCTTCCTTGTGTCCGGCCTCAGTATCCATATACACCACCGTTCTCACAATCCCATCCCCTTCGAACCTCTCGTCGCCGACATCGAGTGCCGTCGCGAGGACCGCAAATGGGAGAATTTGCACTTGGATCCAGACTCCGCCTCCACCGCCGAGTTTGAGTGGAAGGATTACATGGAGAAGTTCAATGTCACTAACAGGCCGTTGGTCTTGTTGTTCCTCAAGATTGATGTCGACCCCGTCGATGGCTTTATCAGCGAGCACGAGTTGACTCAAAGGATCTTGGTAGGGAAACAACCAGATCAGCCCAACGCATGCATAGCAGATCAGATCCCAACCAAAGAAGCAATATATTGCCCCAAACCAAATTTCAGAACCATACATAACATCTTCAGTCAAAACCAACAAACCACCAGGCAAGAACTTGCCAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0005794 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0019538 GO:0031974 GO:0036211 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043687 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0070013 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF-hand_5 EF-hand_7 EF-hand_8

Protein Analysis

212

Amino Acids

23.52

Weight (kDa)

6.44

Isoelectric Point (pI)

48.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010582)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g23090 FvH4_6g23100
malus_domestica	MD12G1065900.v1.1 MD12G1066000.v1.1
prunus_persica	Prupe.7G068400_v2.0.a1
pyrus_communis	pycom12g05720 pycom12g05740
rosa_chinensis	RchiOBHm_Chr3g0480951
rosa_laevigata	RLG00000023342 RLG00000023438 RLG00000023439
rosa_roxburghii	Rroxscaffold_6G00400860
rosa_rugosa	Rorug03G0188100 Rorug03G0188500
rosa_samantha	Rh3AG239300 Rh3BG273500 Rh3BG273700 Rh3CG269200 Rh3DG265100 Rh3DG265200
rosa_wichuraiana	Rw3G021410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	164
AccI	GTMKAC	1 cut(s)	438
AccII	CGCG	1 cut(s)	303
AciI	CCGC	4 cut(s)	92, 310, 345, 354
AclWI	GGATC	4 cut(s)	329, 342, 491, 529
AcsI	RAATTY	2 cut(s)	322, 571
AcuI	CTGAAG	2 cut(s)	187, 580
AcyI	GRCGYC	1 cut(s)	165
AfiI	CCNNNNNNNGG	5 cut(s)	61, 134, 304, 316, 449
AgsI	TTSAA	2 cut(s)	194, 391
AjnI	CCWGG	2 cut(s)	617, 632
AjuI	GAANNNNNNNTTGG	4 cut(s)	314, 346, 557, 589
Alw21I	GWGCWC	1 cut(s)	468
Alw26I	GTCTC	2 cut(s)	68, 114
AlwI	GGATC	4 cut(s)	329, 342, 491, 529
AoxI	GGCC	4 cut(s)	93, 102, 223, 404
ApeKI	GCWGC	3 cut(s)	41, 65, 89
ApoI	RAATTY	2 cut(s)	322, 571
ArsI	GACNNNNNNTTYG	2 cut(s)	264, 296
AspLEI	GCGC	1 cut(s)	167
AspS9I	GGNCC	2 cut(s)	94, 307
AsuII	TTCGAA	1 cut(s)	270
AvaII	GGWCC	1 cut(s)	307
AxyI	CCTNAGG	1 cut(s)	129
BamHI	GGATCC	1 cut(s)	334
BanI	GGYRCC	1 cut(s)	164
BanII	GRGCYC	1 cut(s)	145
BauI	CACGAG	1 cut(s)	467
Bbv12I	GWGCWC	1 cut(s)	468
BbvI	GCAGC	3 cut(s)	52, 53, 101
BccI	CCATC	4 cut(s)	35, 166, 269, 443
BceAI	ACGGC	3 cut(s)	152, 282, 391
BciT130I	CCWGG	2 cut(s)	619, 634
BciVI	GTATCC	1 cut(s)	242
BcoDI	GTCTC	2 cut(s)	68, 114
BfoI	RGCGCY	1 cut(s)	168
BfuI	GTATCC	1 cut(s)	242
BglI	GCCNNNNNGGC	1 cut(s)	101
BglII	AGATCT	1 cut(s)	15
BisI	GCNGC	4 cut(s)	42, 66, 90, 93
BlsI	GCNGC	4 cut(s)	43, 67, 91, 94
Bme1390I	CCNGG	2 cut(s)	619, 634
Bme18I	GGWCC	1 cut(s)	307
BmgT120I	GGNCC	2 cut(s)	94, 307
BmiI	GGNNCC	3 cut(s)	96, 166, 336
BmrFI	CCNGG	2 cut(s)	619, 634
Bpu14I	TTCGAA	1 cut(s)	270
BpuEI	CTTGAG	1 cut(s)	410
BsaHI	GRCGYC	1 cut(s)	165
BsaJI	CCNNGG	1 cut(s)	99
BsaXI	ACNNNNNCTCC	2 cut(s)	332, 362
Bsc4I	CCNNNNNNNGG	5 cut(s)	61, 134, 304, 316, 449
Bse21I	CCTNAGG	1 cut(s)	129
Bse3DI	GCAATG	1 cut(s)	36
BseBI	CCWGG	2 cut(s)	619, 634
BseDI	CCNNGG	1 cut(s)	99
BseGI	GGATG	1 cut(s)	261
BseLI	CCNNNNNNNGG	5 cut(s)	61, 134, 304, 316, 449
BseMI	GCAATG	1 cut(s)	36
BseMII	CTCAG	1 cut(s)	241
BseXI	GCAGC	3 cut(s)	52, 53, 101
Bsh1236I	CGCG	1 cut(s)	303
BshFI	GGCC	4 cut(s)	95, 104, 225, 406
BshNI	GGYRCC	1 cut(s)	164
BsiHKAI	GWGCWC	1 cut(s)	468
BsiSI	CCGG	1 cut(s)	222
BslFI	GGGAC	1 cut(s)	155
BslI	CCNNNNNNNGG	5 cut(s)	61, 134, 304, 316, 449
BsmAI	GTCTC	2 cut(s)	68, 114
BsmFI	GGGAC	1 cut(s)	155
BsnI	GGCC	4 cut(s)	95, 104, 225, 406
Bsp119I	TTCGAA	1 cut(s)	270
Bsp1286I	GDGCHC	2 cut(s)	145, 468
Bsp143I	GATC	6 cut(s)	15, 334, 483, 505, 529, 534
Bsp68I	TCGCGA	1 cut(s)	303
BspACI	CCGC	4 cut(s)	92, 310, 345, 354
BspANI	GGCC	4 cut(s)	95, 104, 225, 406
BspCNI	CTCAG	1 cut(s)	240
BspFNI	CGCG	1 cut(s)	303
BspHI	TCATGA	1 cut(s)	48
BspLI	GGNNCC	3 cut(s)	96, 166, 336
BspPI	GGATC	4 cut(s)	329, 342, 491, 529
BspT104I	TTCGAA	1 cut(s)	270
BspT107I	GGYRCC	1 cut(s)	164
BsrDI	GCAATG	1 cut(s)	36
BssECI	CCNNGG	1 cut(s)	99
BssMI	GATC	6 cut(s)	15, 334, 483, 505, 529, 534
BssNI	GRCGYC	1 cut(s)	165
BssSI	CACGAG	1 cut(s)	467
BssT1I	CCWWGG	1 cut(s)	99
Bst2BI	CACGAG	1 cut(s)	467
Bst2UI	CCWGG	2 cut(s)	619, 634
Bst4CI	ACNGT	1 cut(s)	248
BstACI	GRCGYC	1 cut(s)	165
BstBI	TTCGAA	1 cut(s)	270
BstC8I	GCNNGC	4 cut(s)	83, 87, 464, 520
BstDEI	CTNAG	2 cut(s)	129, 227
BstENI	CCTNNNNNAGG	1 cut(s)	132
BstF5I	GGATG	1 cut(s)	261
BstFNI	CGCG	1 cut(s)	303
BstH2I	RGCGCY	1 cut(s)	168
BstHHI	GCGC	1 cut(s)	167
BstKTI	GATC	6 cut(s)	18, 337, 486, 508, 532, 537
BstMAI	GTCTC	2 cut(s)	68, 114
BstMBI	GATC	6 cut(s)	15, 334, 483, 505, 529, 534
BstMWI	GCNNNNNNNGC	5 cut(s)	101, 309, 353, 459, 524
BstNI	CCWGG	2 cut(s)	619, 634
BstNSI	RCATGY	1 cut(s)	522
BstSCI	CCNGG	2 cut(s)	617, 632
BstUI	CGCG	1 cut(s)	303
BstV1I	GCAGC	3 cut(s)	52, 53, 101
BstX2I	RGATCY	4 cut(s)	15, 334, 483, 534
BstYI	RGATCY	4 cut(s)	15, 334, 483, 534
Bsu36I	CCTNAGG	1 cut(s)	129
BsuI	GTATCC	1 cut(s)	242
BsuRI	GGCC	4 cut(s)	95, 104, 225, 406
BtsCI	GGATG	1 cut(s)	261
BtuMI	TCGCGA	1 cut(s)	303
Cac8I	GCNNGC	4 cut(s)	83, 87, 464, 520
CciI	TCATGA	1 cut(s)	48
CfoI	GCGC	1 cut(s)	167
Cfr13I	GGNCC	2 cut(s)	94, 307
CviAII	CATG	4 cut(s)	49, 146, 379, 519
DdeI	CTNAG	2 cut(s)	129, 227
DinI	GGCGCC	1 cut(s)	166
DpnI	GATC	6 cut(s)	17, 336, 485, 507, 531, 536
DpnII	GATC	6 cut(s)	15, 334, 483, 505, 529, 534
EciI	GGCGGA	1 cut(s)	334
Eco130I	CCWWGG	1 cut(s)	99
Eco24I	GRGCYC	1 cut(s)	145
Eco47I	GGWCC	1 cut(s)	307
Eco57I	CTGAAG	2 cut(s)	187, 580
Eco81I	CCTNAGG	1 cut(s)	129
EcoNI	CCTNNNNNAGG	1 cut(s)	132
EcoRII	CCWGG	2 cut(s)	617, 632
EcoT14I	CCWWGG	1 cut(s)	99
EcoT22I	ATGCAT	1 cut(s)	524
EcoT38I	GRGCYC	1 cut(s)	145
EgeI	GGCGCC	1 cut(s)	166
EheI	GGCGCC	1 cut(s)	166
ErhI	CCWWGG	1 cut(s)	99
FaeI	CATG	4 cut(s)	52, 149, 382, 522
FaqI	GGGAC	1 cut(s)	155
FatI	CATG	4 cut(s)	48, 145, 378, 518
FblI	GTMKAC	1 cut(s)	438
Fnu4HI	GCNGC	4 cut(s)	42, 66, 90, 93
FokI	GGATG	1 cut(s)	248
FriOI	GRGCYC	1 cut(s)	145
Fsp4HI	GCNGC	4 cut(s)	42, 66, 90, 93
GlaI	GCGC	1 cut(s)	166
GluI	GCNGC	4 cut(s)	42, 66, 90, 93
HaeII	RGCGCY	1 cut(s)	168
HaeIII	GGCC	4 cut(s)	95, 104, 225, 406
HapII	CCGG	1 cut(s)	222
HhaI	GCGC	1 cut(s)	167
Hin1I	GRCGYC	1 cut(s)	165
Hin1II	CATG	4 cut(s)	52, 149, 382, 522
Hin6I	GCGC	1 cut(s)	165
HinP1I	GCGC	1 cut(s)	165
HincII	GTYRAC	2 cut(s)	439, 474
HindII	GTYRAC	2 cut(s)	439, 474
HinfI	GANTC	3 cut(s)	194, 341, 475
HpaII	CCGG	1 cut(s)	222
Hpy166II	GTNNAC	2 cut(s)	439, 474
Hpy188I	TCNGA	2 cut(s)	534, 578
Hpy188III	TCNNGA	4 cut(s)	49, 302, 338, 427
Hpy8I	GTNNAC	2 cut(s)	439, 474
Hpy99I	CGWCG	5 cut(s)	26, 62, 284, 303, 449
HpyAV	CCTTC	5 cut(s)	55, 128, 220, 277, 364
HpyCH4III	ACNGT	1 cut(s)	248
HpyCH4V	TGCA	4 cut(s)	41, 68, 328, 522
HpyF10VI	GCNNNNNNNGC	5 cut(s)	101, 309, 353, 459, 524
HpyF3I	CTNAG	2 cut(s)	129, 227
Hsp92I	GRCGYC	1 cut(s)	165
Hsp92II	CATG	4 cut(s)	52, 149, 382, 522
HspAI	GCGC	1 cut(s)	165
KasI	GGCGCC	1 cut(s)	164
Kzo9I	GATC	6 cut(s)	15, 334, 483, 505, 529, 534
Lsp1109I	GCAGC	3 cut(s)	52, 53, 101
MaeIII	GTNAC	1 cut(s)	394
MalI	GATC	6 cut(s)	17, 336, 485, 507, 531, 536
MboI	GATC	6 cut(s)	15, 334, 483, 505, 529, 534
MboII	GAAGA	4 cut(s)	22, 25, 193, 586
MflI	RGATCY	4 cut(s)	15, 334, 483, 534
MhlI	GDGCHC	2 cut(s)	145, 468
MluCI	AATT	2 cut(s)	322, 571
Mly113I	GGCGCC	1 cut(s)	165
MlyI	GAGTC	2 cut(s)	335, 469
MmeI	TCCRAC	1 cut(s)	137
MnlI	CCTC	8 cut(s)	65, 130, 131, 236, 285, 298, 358, 434
Mph1103I	ATGCAT	1 cut(s)	524
MspA1I	CMGCKG	1 cut(s)	92
MspI	CCGG	1 cut(s)	222
MspR9I	CCNGG	2 cut(s)	619, 634
MvaI	CCWGG	2 cut(s)	619, 634
MvnI	CGCG	1 cut(s)	303
MwoI	GCNNNNNNNGC	5 cut(s)	101, 309, 353, 459, 524
NarI	GGCGCC	1 cut(s)	165
NdeII	GATC	6 cut(s)	15, 334, 483, 505, 529, 534
NlaIII	CATG	4 cut(s)	52, 149, 382, 522
NlaIV	GGNNCC	3 cut(s)	96, 166, 336
NmeAIII	GCCGAG	1 cut(s)	382
NmuCI	GTSAC	1 cut(s)	394
NruI	TCGCGA	1 cut(s)	303
NsiI	ATGCAT	1 cut(s)	524
NspI	RCATGY	1 cut(s)	522
NspV	TTCGAA	1 cut(s)	270
PaeI	GCATGC	1 cut(s)	522
PagI	TCATGA	1 cut(s)	48
PcsI	WCGNNNNNNNCGW	3 cut(s)	276, 288, 444
PfeI	GAWTC	1 cut(s)	194
PflFI	GACNNNGTC	1 cut(s)	443
PkrI	GCNGC	4 cut(s)	43, 67, 91, 94
PleI	GAGTC	2 cut(s)	335, 469
PluTI	GGCGCC	1 cut(s)	168
PpsI	GAGTC	2 cut(s)	335, 469
Psp6I	CCWGG	2 cut(s)	617, 632
PspGI	CCWGG	2 cut(s)	617, 632
PspN4I	GGNNCC	3 cut(s)	96, 166, 336
PspPI	GGNCC	2 cut(s)	94, 307
PsuI	RGATCY	4 cut(s)	15, 334, 483, 534
PsyI	GACNNNGTC	1 cut(s)	443
RruI	TCGCGA	1 cut(s)	303
SalI	GTCGAC	1 cut(s)	437
SatI	GCNGC	4 cut(s)	42, 66, 90, 93
Sau3AI	GATC	6 cut(s)	15, 334, 483, 505, 529, 534
Sau96I	GGNCC	2 cut(s)	94, 307
SchI	GAGTC	2 cut(s)	335, 469
ScrFI	CCNGG	2 cut(s)	619, 634
SduI	GDGCHC	2 cut(s)	145, 468
SetI	ASST	4 cut(s)	182, 212, 277, 638
SfiI	GGCCNNNNNGGCC	1 cut(s)	101
SfoI	GGCGCC	1 cut(s)	166
SfuI	TTCGAA	1 cut(s)	270
SinI	GGWCC	1 cut(s)	307
SmlI	CTYRAG	1 cut(s)	425
SmoI	CTYRAG	1 cut(s)	425
SphI	GCATGC	1 cut(s)	522
Sse9I	AATT	2 cut(s)	322, 571
SsiI	CCGC	4 cut(s)	92, 310, 345, 354
SspDI	GGCGCC	1 cut(s)	164
StyD4I	CCNGG	2 cut(s)	617, 632
StyI	CCWWGG	1 cut(s)	99
TaaI	ACNGT	1 cut(s)	248
TaqI	TCGA	4 cut(s)	270, 291, 438, 447
TasI	AATT	2 cut(s)	322, 571
TauI	GCSGC	1 cut(s)	95
TfiI	GAWTC	1 cut(s)	194
TseFI	GTSAC	1 cut(s)	394
TseI	GCWGC	3 cut(s)	41, 65, 89
Tsp45I	GTSAC	1 cut(s)	394
TspDTI	ATGAA	2 cut(s)	23, 37
TspGWI	ACGGA	1 cut(s)	10
Tth111I	GACNNNGTC	1 cut(s)	443
VpaK11BI	GGWCC	1 cut(s)	307
XagI	CCTNNNNNAGG	1 cut(s)	132
XapI	RAATTY	2 cut(s)	322, 571
XceI	RCATGY	1 cut(s)	522
XmiI	GTMKAC	1 cut(s)	438
Zsp2I	ATGCAT	1 cut(s)	524

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.