Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0002064

Physical Location & Seq

Genomic Coordinates Forward (+)

19452030 .. 19452866

Gene Structure 837 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g25530.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGATCAGCTTGGAAGACCTGTACCATGTTCTGACAGCAGTTGTGCCACTCTATGTGGCCATGATATTGGCCTACGGGTCAGTCAAGTGGTGGAAGATCTTCAACCCTGATCAATGTTCTGGCATCAACCGCTTTGTGGCCCTCTTCGTCGTTCCTCTGCTCTCCTTCCACTTCATCTCCACCAAAAATCCATACGCCATGAACTACAGGTTCATAGCTGCAGACACTCTTCAGAAGCTCATTGTCCTTGGGGTCCTAGCCGTATGGTCCAGAACCAGCTCCCGAGGCTCTCTCGACTGGTCCATCACTCTCTTCTCCCTCTCTACTCTCCCCAACACTCTAGTCATGGGCATACCCTTGCTCAAAGGCATGTATGGAGACTCCTCAGGGACCTTAATGGTCCAGATTGTTGTCCTCCAGTGCATTATCTGGTACACTCTCATGCTCTTCTTGTTTGAGTACAGAGGAGCTCGCCTCTTGATTGGTGAGCAGTTCCTAGACACTGCTGCCTCCATCATTTTCTTTCGTGTTGATTCCGACATCCTTTCTTTAGATGGGAAAGAGCCGTTACAGACAGAGGCCCAGGTCGGAGAAGATGGTAAGCTCCATGTCACTGTCAGAAAATCCTCCAGCTCTCGTTCCGAAATCTTCTCCAAACCATCCCTTGGACCCAACTCTGGTGTTTCGTGCACCCCAAGGCTTTCCAACCTGACTAATGCTGAAATCTACAGCCTCCAGTCCTCAAGAAACCCTACTCCCAGGGGTTCCAATTTCAGTCACACTGATTTCTATGCAATGGTGAATGGGAAGAACACGAGTCCAAGGCTGTCCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0006810 GO:0008150 GO:0009914 GO:0009926 GO:0009966 GO:0010252 GO:0010315 GO:0010329 GO:0010646 GO:0010817 GO:0010928 GO:0012505 GO:0015562 GO:0016020 GO:0022857 GO:0023051 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048583 GO:0048878 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0055085 GO:0060918 GO:0065007 GO:0065008 GO:0071944 GO:0080161

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mem_trans

Protein Analysis

279

Amino Acids

30.91

Weight (kDa)

8.94

Isoelectric Point (pI)

27.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mem_trans	PF03547	9 - 214	1.1e-58	Membrane transport protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002064)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73590
fragaria_vesca	FvH4_5g17310 FvH4_5g17310 FvH4_5g17310 FvH4_5g17310 FvH4_6g25530
malus_domestica	MD06G1226800.v1.1 MD12G1095100.v1.1 MD14G1090900.v1.1 MD14G1236300.v1.1
prunus_persica	Prupe.5G233100_v2.0.a1 Prupe.5G233100_v2.0.a1 Prupe.7G031400_v2.0.a1
pyrus_communis	pycom06g20310 pycom12g08100 pycom14g08280 pycom14g19730
rosa_chinensis	RchiOBHm_Chr2g0125421 RchiOBHm_Chr7g0178461
rosa_laevigata	RLG00000005446 RLG00000018862
rosa_multiflora	Rmu_co8305407.1_g000001 Rmu_co8511139.1_g000001 Rmu_sc0010235.1_g000007
rosa_roxburghii	Rroxscaffold_2G00118040 Rroxscaffold_3G00274900
rosa_rugosa	Rorug02G0257200 Rorug02G0257300 Rorug06G0417200 Rorug06G0417200
rosa_samantha	Rh2AG315900 Rh2BG323700 Rh2CG305900 Rh2DG342200 Rh3AG201700 Rh5AG183300 Rh5DG535000 Rh7AG015800 Rh7BG015200 Rh7CG016000 Rh7DG015600 Rh7DG015700
rosa_wichuraiana	Rw2G025490 Rw7G001240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	665
AciI	CCGC	1 cut(s)	130
AcoI	YGGCCR	1 cut(s)	57
AcuI	CTGAAG	1 cut(s)	215
AfaI	GTAC	3 cut(s)	23, 434, 461
AfiI	CCNNNNNNNGG	3 cut(s)	136, 665, 677
AgsI	TTSAA	1 cut(s)	103
AjnI	CCWGG	2 cut(s)	582, 758
AluBI	AGCT	7 cut(s)	9, 218, 238, 279, 470, 604, 633
AluI	AGCT	7 cut(s)	9, 218, 238, 279, 470, 604, 633
Alw21I	GWGCWC	2 cut(s)	472, 692
Alw26I	GTCTC	1 cut(s)	372
Alw44I	GTGCAC	1 cut(s)	688
Ama87I	CYCGRG	1 cut(s)	282
AoxI	GGCC	4 cut(s)	57, 69, 138, 579
ApaLI	GTGCAC	1 cut(s)	688
ApeKI	GCWGC	2 cut(s)	218, 506
Asp700I	GAANNNNTTC	1 cut(s)	98
AspS9I	GGNCC	8 cut(s)	139, 253, 267, 300, 390, 400, 580, 668
AsuHPI	GGTGA	2 cut(s)	497, 811
AvaI	CYCGRG	1 cut(s)	282
AvaII	GGWCC	6 cut(s)	253, 267, 300, 390, 400, 668
AxyI	CCTNAGG	1 cut(s)	385
BaeGI	GKGCMC	1 cut(s)	692
BalI	TGGCCA	1 cut(s)	59
BanII	GRGCYC	1 cut(s)	472
BauI	CACGAG	1 cut(s)	814
BbsI	GAAGAC	1 cut(s)	21
Bbv12I	GWGCWC	2 cut(s)	472, 692
BbvI	GCAGC	2 cut(s)	205, 493
BccI	CCATC	5 cut(s)	311, 521, 548, 590, 667
BceAI	ACGGC	2 cut(s)	245, 550
BciT130I	CCWGG	2 cut(s)	584, 760
BclI	TGATCA	2 cut(s)	3, 109
BcoDI	GTCTC	1 cut(s)	372
BfaI	CTAG	3 cut(s)	257, 341, 497
BfmI	CTRYAG	3 cut(s)	205, 219, 727
BglII	AGATCT	1 cut(s)	96
BisI	GCNGC	2 cut(s)	219, 507
BlsI	GCNGC	2 cut(s)	220, 508
Bme1390I	CCNGG	2 cut(s)	584, 760
Bme18I	GGWCC	6 cut(s)	253, 267, 300, 390, 400, 668
BmeT110I	CYCGRG	1 cut(s)	282
BmgT120I	GGNCC	8 cut(s)	139, 253, 267, 300, 390, 400, 580, 668
BmiI	GGNNCC	4 cut(s)	254, 391, 670, 766
BmrFI	CCNGG	2 cut(s)	584, 760
BmsI	GCATC	1 cut(s)	132
BpiI	GAAGAC	1 cut(s)	21
BplI	GAGNNNNNCTC	4 cut(s)	276, 308, 459, 491
BpmI	CTGGAG	3 cut(s)	401, 613, 719
BpuEI	CTTGAG	1 cut(s)	727
BsaJI	CCNNGG	8 cut(s)	247, 283, 582, 664, 695, 758, 759, 821
BsaXI	ACNNNNNCTCC	2 cut(s)	161, 191
Bsc4I	CCNNNNNNNGG	3 cut(s)	136, 665, 677
Bse1I	ACTGG	3 cut(s)	302, 418, 736
Bse21I	CCTNAGG	1 cut(s)	385
Bse3DI	GCAATG	1 cut(s)	801
BseBI	CCWGG	2 cut(s)	584, 760
BseDI	CCNNGG	8 cut(s)	247, 283, 582, 664, 695, 758, 759, 821
BseGI	GGATG	2 cut(s)	540, 659
BseLI	CCNNNNNNNGG	3 cut(s)	136, 665, 677
BseMI	GCAATG	1 cut(s)	801
BseMII	CTCAG	1 cut(s)	399
BseNI	ACTGG	3 cut(s)	302, 418, 736
BseRI	GAGGAG	2 cut(s)	373, 480
BseSI	GKGCMC	1 cut(s)	692
BseXI	GCAGC	2 cut(s)	205, 493
BshFI	GGCC	4 cut(s)	59, 71, 140, 581
BsiHKAI	GWGCWC	2 cut(s)	472, 692
BsiHKCI	CYCGRG	1 cut(s)	282
BslFI	GGGAC	1 cut(s)	403
BslI	CCNNNNNNNGG	3 cut(s)	136, 665, 677
BsmAI	GTCTC	1 cut(s)	372
BsmFI	GGGAC	1 cut(s)	403
BsnI	GGCC	4 cut(s)	59, 71, 140, 581
BsoBI	CYCGRG	1 cut(s)	282
Bsp1286I	GDGCHC	2 cut(s)	472, 692
Bsp143I	GATC	3 cut(s)	3, 96, 109
BspACI	CCGC	1 cut(s)	130
BspANI	GGCC	4 cut(s)	59, 71, 140, 581
BspCNI	CTCAG	1 cut(s)	398
BspLI	GGNNCC	4 cut(s)	254, 391, 670, 766
BspMAI	CTGCAG	1 cut(s)	223
BspQI	GCTCTTC	1 cut(s)	452
BsrDI	GCAATG	1 cut(s)	801
BsrI	ACTGG	3 cut(s)	302, 418, 736
BssECI	CCNNGG	8 cut(s)	247, 283, 582, 664, 695, 758, 759, 821
BssMI	GATC	3 cut(s)	3, 96, 109
BssSI	CACGAG	1 cut(s)	814
BssT1I	CCWWGG	4 cut(s)	247, 664, 695, 821
Bst2BI	CACGAG	1 cut(s)	814
Bst2UI	CCWGG	2 cut(s)	584, 760
Bst4CI	ACNGT	1 cut(s)	616
Bst6I	CTCTTC	4 cut(s)	149, 234, 317, 452
BstC8I	GCNNGC	1 cut(s)	472
BstDEI	CTNAG	1 cut(s)	385
BstF5I	GGATG	2 cut(s)	540, 659
BstKTI	GATC	3 cut(s)	6, 99, 112
BstMAI	GTCTC	1 cut(s)	372
BstMBI	GATC	3 cut(s)	3, 96, 109
BstMWI	GCNNNNNNNGC	2 cut(s)	129, 285
BstNI	CCWGG	2 cut(s)	584, 760
BstNSI	RCATGY	1 cut(s)	373
BstSCI	CCNGG	2 cut(s)	582, 758
BstSFI	CTRYAG	3 cut(s)	205, 219, 727
BstSLI	GKGCMC	1 cut(s)	692
BstV1I	GCAGC	2 cut(s)	205, 493
BstV2I	GAAGAC	1 cut(s)	21
BstX2I	RGATCY	1 cut(s)	96
BstXI	CCANNNNNNTGG	1 cut(s)	67
BstYI	RGATCY	1 cut(s)	96
Bsu36I	CCTNAGG	1 cut(s)	385
BsuRI	GGCC	4 cut(s)	59, 71, 140, 581
BtsCI	GGATG	2 cut(s)	540, 659
BtsI	GCAGTG	1 cut(s)	501
BtsIMutI	CAGTG	4 cut(s)	425, 501, 612, 780
Cac8I	GCNNGC	1 cut(s)	472
Cfr13I	GGNCC	8 cut(s)	139, 253, 267, 300, 390, 400, 580, 668
Csp6I	GTAC	3 cut(s)	22, 433, 460
CviAII	CATG	7 cut(s)	26, 61, 199, 346, 370, 442, 608
CviQI	GTAC	3 cut(s)	22, 433, 460
DdeI	CTNAG	1 cut(s)	385
DpnI	GATC	3 cut(s)	5, 98, 111
DpnII	GATC	3 cut(s)	3, 96, 109
EaeI	YGGCCR	1 cut(s)	57
Eam1104I	CTCTTC	4 cut(s)	149, 234, 317, 452
EarI	CTCTTC	4 cut(s)	149, 234, 317, 452
Ecl136II	GAGCTC	1 cut(s)	470
Eco130I	CCWWGG	4 cut(s)	247, 664, 695, 821
Eco24I	GRGCYC	1 cut(s)	472
Eco47I	GGWCC	6 cut(s)	253, 267, 300, 390, 400, 668
Eco53kI	GAGCTC	1 cut(s)	470
Eco57I	CTGAAG	1 cut(s)	215
Eco81I	CCTNAGG	1 cut(s)	385
Eco88I	CYCGRG	1 cut(s)	282
EcoICRI	GAGCTC	1 cut(s)	470
EcoO109I	RGGNCCY	2 cut(s)	253, 390
EcoRII	CCWGG	2 cut(s)	582, 758
EcoT14I	CCWWGG	4 cut(s)	247, 664, 695, 821
EcoT38I	GRGCYC	1 cut(s)	472
ErhI	CCWWGG	4 cut(s)	247, 664, 695, 821
FaeI	CATG	7 cut(s)	29, 64, 202, 349, 373, 445, 611
FaqI	GGGAC	1 cut(s)	403
FatI	CATG	7 cut(s)	25, 60, 198, 345, 369, 441, 607
FbaI	TGATCA	2 cut(s)	3, 109
Fnu4HI	GCNGC	2 cut(s)	219, 507
FokI	GGATG	2 cut(s)	527, 646
FriOI	GRGCYC	1 cut(s)	472
Fsp4HI	GCNGC	2 cut(s)	219, 507
FspBI	CTAG	3 cut(s)	257, 341, 497
GluI	GCNGC	2 cut(s)	219, 507
GsuI	CTGGAG	3 cut(s)	401, 613, 719
HaeIII	GGCC	4 cut(s)	59, 71, 140, 581
Hin1II	CATG	7 cut(s)	29, 64, 202, 349, 373, 445, 611
HinfI	GANTC	3 cut(s)	380, 533, 817
HphI	GGTGA	2 cut(s)	497, 811
Hpy166II	GTNNAC	2 cut(s)	435, 690
Hpy188I	TCNGA	6 cut(s)	33, 234, 538, 590, 620, 643
Hpy188III	TCNNGA	6 cut(s)	270, 282, 293, 403, 478, 744
Hpy8I	GTNNAC	2 cut(s)	435, 690
Hpy99I	CGWCG	1 cut(s)	152
HpyAV	CCTTC	1 cut(s)	175
HpyCH4III	ACNGT	1 cut(s)	616
HpyCH4V	TGCA	4 cut(s)	221, 423, 690, 794
HpyF10VI	GCNNNNNNNGC	2 cut(s)	129, 285
HpyF3I	CTNAG	1 cut(s)	385
Hsp92II	CATG	7 cut(s)	29, 64, 202, 349, 373, 445, 611
Ksp22I	TGATCA	2 cut(s)	3, 109
Kzo9I	GATC	3 cut(s)	3, 96, 109
LguI	GCTCTTC	1 cut(s)	452
LmnI	GCTCC	3 cut(s)	284, 467, 609
Lsp1109I	GCAGC	2 cut(s)	205, 493
LweI	GCATC	1 cut(s)	132
MaeI	CTAG	3 cut(s)	257, 341, 497
MaeIII	GTNAC	3 cut(s)	567, 610, 776
MalI	GATC	3 cut(s)	5, 98, 111
MboI	GATC	3 cut(s)	3, 96, 109
MflI	RGATCY	1 cut(s)	96
MhlI	GDGCHC	2 cut(s)	472, 692
MlsI	TGGCCA	1 cut(s)	59
MluCI	AATT	2 cut(s)	769, 832
MluNI	TGGCCA	1 cut(s)	59
MlyI	GAGTC	2 cut(s)	374, 826
MmeI	TCCRAC	3 cut(s)	561, 568, 729
Mox20I	TGGCCA	1 cut(s)	59
MroXI	GAANNNNTTC	1 cut(s)	98
MscI	TGGCCA	1 cut(s)	59
MseI	TTAA	2 cut(s)	395, 835
MslI	CAYNNNNRTG	1 cut(s)	440
Msp20I	TGGCCA	1 cut(s)	59
MspR9I	CCNGG	2 cut(s)	584, 760
MvaI	CCWGG	2 cut(s)	584, 760
MwoI	GCNNNNNNNGC	2 cut(s)	129, 285
NdeII	GATC	3 cut(s)	3, 96, 109
NlaIII	CATG	7 cut(s)	29, 64, 202, 349, 373, 445, 611
NlaIV	GGNNCC	4 cut(s)	254, 391, 670, 766
NmuCI	GTSAC	2 cut(s)	610, 776
NspI	RCATGY	1 cut(s)	373
PasI	CCCWGGG	1 cut(s)	759
PciSI	GCTCTTC	1 cut(s)	452
PdmI	GAANNNNTTC	1 cut(s)	98
PfeI	GAWTC	1 cut(s)	533
PflMI	CCANNNNNTGG	1 cut(s)	665
PkrI	GCNGC	2 cut(s)	220, 508
PleI	GAGTC	2 cut(s)	374, 825
PpsI	GAGTC	2 cut(s)	374, 825
PpuMI	RGGWCCY	2 cut(s)	253, 390
Psp124BI	GAGCTC	1 cut(s)	472
Psp5II	RGGWCCY	2 cut(s)	253, 390
Psp6I	CCWGG	2 cut(s)	582, 758
PspGI	CCWGG	2 cut(s)	582, 758
PspN4I	GGNNCC	4 cut(s)	254, 391, 670, 766
PspPI	GGNCC	8 cut(s)	139, 253, 267, 300, 390, 400, 580, 668
PspPPI	RGGWCCY	2 cut(s)	253, 390
PstI	CTGCAG	1 cut(s)	223
PsuI	RGATCY	1 cut(s)	96
RsaI	GTAC	3 cut(s)	23, 434, 461
RsaNI	GTAC	3 cut(s)	22, 433, 460
RseI	CAYNNNNRTG	1 cut(s)	440
SacI	GAGCTC	1 cut(s)	472
SapI	GCTCTTC	1 cut(s)	452
SaqAI	TTAA	2 cut(s)	395, 835
SatI	GCNGC	2 cut(s)	219, 507
Sau3AI	GATC	3 cut(s)	3, 96, 109
Sau96I	GGNCC	8 cut(s)	139, 253, 267, 300, 390, 400, 580, 668
SchI	GAGTC	2 cut(s)	374, 826
ScrFI	CCNGG	2 cut(s)	584, 760
SduI	GDGCHC	2 cut(s)	472, 692
SfaNI	GCATC	1 cut(s)	132
SfcI	CTRYAG	3 cut(s)	205, 219, 727
SinI	GGWCC	6 cut(s)	253, 267, 300, 390, 400, 668
SmiMI	CAYNNNNRTG	1 cut(s)	440
SmlI	CTYRAG	1 cut(s)	742
SmoI	CTYRAG	1 cut(s)	742
Sse9I	AATT	2 cut(s)	769, 832
SsiI	CCGC	1 cut(s)	130
SspMI	CTAG	3 cut(s)	257, 341, 497
SstI	GAGCTC	1 cut(s)	472
StyD4I	CCNGG	2 cut(s)	582, 758
StyI	CCWWGG	4 cut(s)	247, 664, 695, 821
TaaI	ACNGT	1 cut(s)	616
TaqI	TCGA	1 cut(s)	294
TasI	AATT	2 cut(s)	769, 832
TatI	WGTACW	1 cut(s)	459
TfiI	GAWTC	1 cut(s)	533
Tru1I	TTAA	2 cut(s)	395, 835
Tru9I	TTAA	2 cut(s)	395, 835
TscAI	CASTG	4 cut(s)	425, 508, 619, 787
TseFI	GTSAC	2 cut(s)	610, 776
TseI	GCWGC	2 cut(s)	218, 506
Tsp45I	GTSAC	2 cut(s)	610, 776
TspDTI	ATGAA	3 cut(s)	163, 202, 215
TspRI	CASTG	4 cut(s)	425, 508, 619, 787
Van91I	CCANNNNNTGG	1 cut(s)	665
VneI	GTGCAC	1 cut(s)	688
VpaK11BI	GGWCC	6 cut(s)	253, 267, 300, 390, 400, 668
XceI	RCATGY	1 cut(s)	373
XmnI	GAANNNNTTC	1 cut(s)	98
XspI	CTAG	3 cut(s)	257, 341, 497

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.