Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0002064

Physical Location & Seq

Genomic Coordinates Forward (+)

19884858 .. 19889259

Gene Structure 4402 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG201700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGACTGCATGCAGAAGCAGTGGGACTACCTCGAGGAGTGGATGGAGCGCAGCAGCTCTGACATTGTCAGATACAGCTTCGAGCTTGTGGCGAGATTATGAAGCAGAGTCTCTTAGGGCTGGGATTTCTGAACCGAGAACCAGTGGAACCGCCCCGATTAGAATCGAAATAGGCACTTTGAGGTCGTTTGTGGCATCTTTGAAGAAAAGAATCAATCAATCGCATTTCTCAATTCAAGAACTGTTGTTGGCAAGTGGACTAAGCAATTTCCAGATATTCAACATGAAAAAGGGCAATGCCCATCCCTCATGGACTTCTACGTACGGCAAATACGTGAGGACCCAATATATGGTAAAGTCATATTTCTTCATGGTAAAGTCTCTCGCACTTTCAAGTACCCCAAGTTCAGAGAATGACTTGCATGCAGCCATGATGGAATTGATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

148

Amino Acids

16.33

Weight (kDa)

9.72

Isoelectric Point (pI)

43.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002064)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73590
fragaria_vesca	FvH4_5g17310 FvH4_5g17310 FvH4_5g17310 FvH4_5g17310 FvH4_6g25530
malus_domestica	MD06G1226800.v1.1 MD12G1095100.v1.1 MD14G1090900.v1.1 MD14G1236300.v1.1
prunus_persica	Prupe.5G233100_v2.0.a1 Prupe.5G233100_v2.0.a1 Prupe.7G031400_v2.0.a1
pyrus_communis	pycom06g20310 pycom12g08100 pycom14g08280 pycom14g19730
rosa_chinensis	RchiOBHm_Chr2g0125421 RchiOBHm_Chr7g0178461
rosa_laevigata	RLG00000005446 RLG00000018862
rosa_multiflora	Rmu_co8305407.1_g000001 Rmu_co8511139.1_g000001 Rmu_sc0010235.1_g000007
rosa_roxburghii	Rroxscaffold_2G00118040 Rroxscaffold_3G00274900
rosa_rugosa	Rorug02G0257200 Rorug02G0257300 Rorug06G0417200 Rorug06G0417200
rosa_samantha	Rh2AG315900 Rh2BG323700 Rh2CG305900 Rh2DG342200 Rh3AG201700 Rh5AG183300 Rh5DG535000 Rh7AG015800 Rh7BG015200 Rh7CG016000 Rh7DG015600 Rh7DG015700
rosa_wichuraiana	Rw2G025490 Rw7G001240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	31
AccB7I	CCANNNNNTGG	1 cut(s)	349
AciI	CCGC	1 cut(s)	150
AfaI	GTAC	2 cut(s)	323, 397
AfiI	CCNNNNNNNGG	1 cut(s)	349
AgsI	TTSAA	4 cut(s)	202, 236, 280, 393
AluBI	AGCT	3 cut(s)	56, 77, 84
AluI	AGCT	3 cut(s)	56, 77, 84
Alw26I	GTCTC	2 cut(s)	114, 384
Ama87I	CYCGRG	1 cut(s)	31
ApeKI	GCWGC	3 cut(s)	50, 53, 425
AspLEI	GCGC	1 cut(s)	50
AspS9I	GGNCC	1 cut(s)	339
AvaI	CYCGRG	1 cut(s)	31
AvaII	GGWCC	1 cut(s)	339
BbvI	GCAGC	3 cut(s)	62, 65, 437
BccI	CCATC	3 cut(s)	36, 309, 427
BceAI	ACGGC	1 cut(s)	340
BcoDI	GTCTC	2 cut(s)	114, 384
BisI	GCNGC	3 cut(s)	51, 54, 426
BlsI	GCNGC	3 cut(s)	52, 55, 427
Bme18I	GGWCC	1 cut(s)	339
BmeT110I	CYCGRG	1 cut(s)	31
BmgT120I	GGNCC	1 cut(s)	339
BmiI	GGNNCC	2 cut(s)	148, 341
BmsI	GCATC	1 cut(s)	203
BsaAI	YACGTR	2 cut(s)	321, 334
BsaBI	GATNNNNATC	1 cut(s)	161
Bsc4I	CCNNNNNNNGG	1 cut(s)	349
Bse1I	ACTGG	1 cut(s)	141
Bse3DI	GCAATG	1 cut(s)	301
Bse8I	GATNNNNATC	1 cut(s)	161
BseGI	GGATG	2 cut(s)	47, 301
BseJI	GATNNNNATC	1 cut(s)	161
BseLI	CCNNNNNNNGG	1 cut(s)	349
BseMI	GCAATG	1 cut(s)	301
BseNI	ACTGG	1 cut(s)	141
BseRI	GAGGAG	1 cut(s)	49
BseXI	GCAGC	3 cut(s)	62, 65, 437
BseYI	CCCAGC	1 cut(s)	119
BsiHKCI	CYCGRG	1 cut(s)	31
BsiWI	CGTACG	1 cut(s)	321
BslFI	GGGAC	1 cut(s)	37
BslI	CCNNNNNNNGG	1 cut(s)	349
BsmAI	GTCTC	2 cut(s)	114, 384
BsmFI	GGGAC	1 cut(s)	37
BsoBI	CYCGRG	1 cut(s)	31
BspACI	CCGC	1 cut(s)	150
BspLI	GGNNCC	2 cut(s)	148, 341
BsrDI	GCAATG	1 cut(s)	301
BsrI	ACTGG	1 cut(s)	141
Bst4CI	ACNGT	1 cut(s)	243
BstBAI	YACGTR	2 cut(s)	321, 334
BstC8I	GCNNGC	2 cut(s)	10, 423
BstDEI	CTNAG	2 cut(s)	113, 260
BstF5I	GGATG	2 cut(s)	47, 301
BstHHI	GCGC	1 cut(s)	50
BstMAI	GTCTC	2 cut(s)	114, 384
BstNSI	RCATGY	2 cut(s)	12, 425
BstSNI	TACGTA	1 cut(s)	321
BstV1I	GCAGC	3 cut(s)	62, 65, 437
BtsCI	GGATG	2 cut(s)	47, 301
BtsI	GCAGTG	1 cut(s)	25
BtsIMutI	CAGTG	2 cut(s)	25, 148
Cac8I	GCNNGC	2 cut(s)	10, 423
CfoI	GCGC	1 cut(s)	50
Cfr13I	GGNCC	1 cut(s)	339
Csp6I	GTAC	2 cut(s)	322, 396
CviAII	CATG	6 cut(s)	9, 283, 309, 370, 422, 430
CviJI	RGCY	5 cut(s)	56, 77, 84, 119, 428
CviKI_1	RGCY	5 cut(s)	56, 77, 84, 119, 428
CviQI	GTAC	2 cut(s)	322, 396
DdeI	CTNAG	2 cut(s)	113, 260
Eco105I	TACGTA	1 cut(s)	321
Eco47I	GGWCC	1 cut(s)	339
Eco88I	CYCGRG	1 cut(s)	31
EcoO109I	RGGNCCY	1 cut(s)	339
FaeI	CATG	6 cut(s)	12, 286, 312, 373, 425, 433
FaqI	GGGAC	1 cut(s)	37
FatI	CATG	6 cut(s)	8, 282, 308, 369, 421, 429
Fnu4HI	GCNGC	3 cut(s)	51, 54, 426
FokI	GGATG	2 cut(s)	54, 288
Fsp4HI	GCNGC	3 cut(s)	51, 54, 426
GlaI	GCGC	1 cut(s)	49
GluI	GCNGC	3 cut(s)	51, 54, 426
GsaI	CCCAGC	1 cut(s)	123
HhaI	GCGC	1 cut(s)	50
Hin1II	CATG	6 cut(s)	12, 286, 312, 373, 425, 433
Hin6I	GCGC	1 cut(s)	48
HinP1I	GCGC	1 cut(s)	48
HinfI	GANTC	3 cut(s)	107, 162, 210
Hpy166II	GTNNAC	1 cut(s)	257
Hpy188I	TCNGA	4 cut(s)	60, 70, 130, 409
Hpy188III	TCNNGA	2 cut(s)	236, 271
Hpy8I	GTNNAC	1 cut(s)	257
HpyCH4III	ACNGT	1 cut(s)	243
HpyCH4IV	ACGT	2 cut(s)	320, 333
HpyCH4V	TGCA	4 cut(s)	8, 12, 421, 425
HpyF3I	CTNAG	2 cut(s)	113, 260
HpySE526I	ACGT	2 cut(s)	320, 333
Hsp92II	CATG	6 cut(s)	12, 286, 312, 373, 425, 433
HspAI	GCGC	1 cut(s)	48
LmnI	GCTCC	1 cut(s)	45
LpnPI	CCDG	3 cut(s)	105, 154, 284
Lsp1109I	GCAGC	3 cut(s)	62, 65, 437
LweI	GCATC	1 cut(s)	203
MaeII	ACGT	2 cut(s)	320, 333
MboII	GAAGA	2 cut(s)	214, 358
MluCI	AATT	3 cut(s)	231, 265, 437
MlyI	GAGTC	1 cut(s)	116
MnlI	CCTC	5 cut(s)	27, 40, 174, 316, 330
NlaIII	CATG	6 cut(s)	12, 286, 312, 373, 425, 433
NlaIV	GGNNCC	2 cut(s)	148, 341
NspI	RCATGY	2 cut(s)	12, 425
PaeI	GCATGC	2 cut(s)	12, 425
PaeR7I	CTCGAG	1 cut(s)	31
PcsI	WCGNNNNNNNCGW	1 cut(s)	330
PfeI	GAWTC	2 cut(s)	162, 210
Pfl23II	CGTACG	1 cut(s)	321
PflFI	GACNNNGTC	1 cut(s)	64
PflMI	CCANNNNNTGG	1 cut(s)	349
PkrI	GCNGC	3 cut(s)	52, 55, 427
PleI	GAGTC	1 cut(s)	115
PpsI	GAGTC	1 cut(s)	115
Ppu21I	YACGTR	2 cut(s)	321, 334
PpuMI	RGGWCCY	1 cut(s)	339
Psp5II	RGGWCCY	1 cut(s)	339
PspFI	CCCAGC	1 cut(s)	119
PspLI	CGTACG	1 cut(s)	321
PspN4I	GGNNCC	2 cut(s)	148, 341
PspPI	GGNCC	1 cut(s)	339
PspPPI	RGGWCCY	1 cut(s)	339
PspXI	VCTCGAGB	1 cut(s)	31
PsrI	GAACNNNNNNTAC	2 cut(s)	388, 420
PsyI	GACNNNGTC	1 cut(s)	64
RsaI	GTAC	2 cut(s)	323, 397
RsaNI	GTAC	2 cut(s)	322, 396
SatI	GCNGC	3 cut(s)	51, 54, 426
Sau96I	GGNCC	1 cut(s)	339
SchI	GAGTC	1 cut(s)	116
SetI	ASST	7 cut(s)	32, 58, 79, 86, 185, 323, 336
SfaNI	GCATC	1 cut(s)	203
Sfr274I	CTCGAG	1 cut(s)	31
SinI	GGWCC	1 cut(s)	339
SlaI	CTCGAG	1 cut(s)	31
SmlI	CTYRAG	1 cut(s)	31
SmoI	CTYRAG	1 cut(s)	31
SnaBI	TACGTA	1 cut(s)	321
SphI	GCATGC	2 cut(s)	12, 425
Sse9I	AATT	3 cut(s)	231, 265, 437
SsiI	CCGC	1 cut(s)	150
TaaI	ACNGT	1 cut(s)	243
TaiI	ACGT	2 cut(s)	323, 336
TaqI	TCGA	3 cut(s)	32, 80, 165
TasI	AATT	3 cut(s)	231, 265, 437
TfiI	GAWTC	2 cut(s)	162, 210
TscAI	CASTG	2 cut(s)	25, 148
TseI	GCWGC	3 cut(s)	50, 53, 425
TspDTI	ATGAA	3 cut(s)	114, 299, 358
TspRI	CASTG	2 cut(s)	25, 148
Tth111I	GACNNNGTC	1 cut(s)	64
Van91I	CCANNNNNTGG	1 cut(s)	349
VpaK11BI	GGWCC	1 cut(s)	339
XceI	RCATGY	2 cut(s)	12, 425
XhoI	CTCGAG	1 cut(s)	31

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.