Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8305407.1

Orthogroup ID

OG0002064

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 506

Gene Structure 505 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8305407.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 505 bp

atgatcacattatccgacttctaccacgtcatgacggcggtggttccgctctacgtggccatggtcttggcctacggctccgtcaagtggtggaagatcttcacccccgaccagtgctccggcatcaaccggttcgtcgccctcttcgccgttcccttactctccttccacttcatctcctccaacaacccctacgccatgaacacccgcttcctcgccgccgacactctccagaagctgatcgtcctcgccgtcctcgccgtctggtccaaagtcagcaaacgcggctgcctcgagtggaccatcaccctcttctccgtctccactctccccaacaccctcgtcatgggaatcccgctgctcaaaggaatgtacggcgacttctccggcagcctcatggtccaaatagtcgtcctccagtgcattatctggtacacattgatgctcttcatgttcgaataccgcggcgcccggctcctcatctccgagcagttccccgacaccg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005911 GO:0006810 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0009314 GO:0009416 GO:0009505 GO:0009506 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009639 GO:0009640 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009908 GO:0009914 GO:0009921 GO:0009925 GO:0009926 GO:0009965 GO:0009966 GO:0009987 GO:0010016 GO:0010033 GO:0010051 GO:0010154 GO:0010229 GO:0010252 GO:0010315 GO:0010329 GO:0010338 GO:0010358 GO:0010646 GO:0010817 GO:0010928 GO:0012505 GO:0015562 GO:0016020 GO:0016021 GO:0016323 GO:0022414 GO:0022622 GO:0022857 GO:0023051 GO:0023052 GO:0030054 GO:0030312 GO:0031224 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0045177 GO:0045178 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048532 GO:0048583 GO:0048598 GO:0048608 GO:0048646 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048830 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055044 GO:0055085 GO:0060918 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0080161 GO:0090567 GO:0090698 GO:0098590 GO:0098796 GO:0098797 GO:0099402 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mem_trans

Protein Analysis

168

Amino Acids

19.04

Weight (kDa)

8.82

Isoelectric Point (pI)

12.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002064)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73590
fragaria_vesca	FvH4_5g17310 FvH4_5g17310 FvH4_5g17310 FvH4_5g17310 FvH4_6g25530
malus_domestica	MD06G1226800.v1.1 MD12G1095100.v1.1 MD14G1090900.v1.1 MD14G1236300.v1.1
prunus_persica	Prupe.5G233100_v2.0.a1 Prupe.5G233100_v2.0.a1 Prupe.7G031400_v2.0.a1
pyrus_communis	pycom06g20310 pycom12g08100 pycom14g08280 pycom14g19730
rosa_chinensis	RchiOBHm_Chr2g0125421 RchiOBHm_Chr7g0178461
rosa_laevigata	RLG00000005446 RLG00000018862
rosa_multiflora	Rmu_co8305407.1_g000001 Rmu_co8511139.1_g000001 Rmu_sc0010235.1_g000007
rosa_roxburghii	Rroxscaffold_2G00118040 Rroxscaffold_3G00274900
rosa_rugosa	Rorug02G0257200 Rorug02G0257300 Rorug06G0417200 Rorug06G0417200
rosa_samantha	Rh2AG315900 Rh2BG323700 Rh2CG305900 Rh2DG342200 Rh3AG201700 Rh5AG183300 Rh5DG535000 Rh7AG015800 Rh7BG015200 Rh7CG016000 Rh7DG015600 Rh7DG015700
rosa_wichuraiana	Rw2G025490 Rw7G001240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	467
AccBSI	CCGCTC	1 cut(s)	49
AccII	CGCG	2 cut(s)	285, 465
AciI	CCGC	8 cut(s)	38, 47, 208, 219, 285, 356, 463, 465
AcoI	YGGCCR	1 cut(s)	57
AcyI	GRCGYC	1 cut(s)	468
AfaI	GTAC	2 cut(s)	374, 434
AfiI	CCNNNNNNNGG	2 cut(s)	87, 346
AgeI	ACCGGT	1 cut(s)	129
AjiI	CACGTC	1 cut(s)	28
AluBI	AGCT	1 cut(s)	238
AluI	AGCT	1 cut(s)	238
Alw21I	GWGCWC	1 cut(s)	119
Alw26I	GTCTC	1 cut(s)	325
AlwNI	CAGNNNCTG	1 cut(s)	238
Ama87I	CYCGRG	1 cut(s)	293
AoxI	GGCC	2 cut(s)	57, 69
ApeKI	GCWGC	3 cut(s)	288, 358, 390
AsiGI	ACCGGT	1 cut(s)	129
Asp700I	GAANNNNTTC	1 cut(s)	98
AspLEI	GCGC	1 cut(s)	470
AspS9I	GGNCC	3 cut(s)	267, 300, 400
AsuC2I	CCSGG	1 cut(s)	472
AsuHPI	GGTGA	2 cut(s)	94, 298
AsuII	TTCGAA	1 cut(s)	456
AvaI	CYCGRG	1 cut(s)	293
AvaII	GGWCC	3 cut(s)	267, 300, 400
BalI	TGGCCA	1 cut(s)	59
BanI	GGYRCC	1 cut(s)	467
BarI	GAAGNNNNNNTAC	2 cut(s)	365, 397
Bbv12I	GWGCWC	1 cut(s)	119
BbvI	GCAGC	3 cut(s)	275, 345, 402
BccI	CCATC	1 cut(s)	311
BceAI	ACGGC	6 cut(s)	51, 91, 134, 236, 245, 391
BclI	TGATCA	1 cut(s)	3
BcnI	CCSGG	1 cut(s)	472
BcoDI	GTCTC	1 cut(s)	325
BfoI	RGCGCY	1 cut(s)	471
BglII	AGATCT	1 cut(s)	96
BisI	GCNGC	6 cut(s)	219, 286, 289, 359, 391, 466
BlsI	GCNGC	6 cut(s)	220, 287, 290, 360, 392, 467
Bme1390I	CCNGG	1 cut(s)	472
Bme18I	GGWCC	3 cut(s)	267, 300, 400
BmeT110I	CYCGRG	1 cut(s)	293
BmgBI	CACGTC	1 cut(s)	28
BmgT120I	GGNCC	3 cut(s)	267, 300, 400
BmiI	GGNNCC	4 cut(s)	45, 79, 469, 476
BmrFI	CCNGG	1 cut(s)	472
BmsI	GCATC	2 cut(s)	132, 432
BpmI	CTGGAG	2 cut(s)	215, 401
Bpu14I	TTCGAA	1 cut(s)	456
BpuMI	CCSGG	1 cut(s)	472
BsaAI	YACGTR	1 cut(s)	55
BsaHI	GRCGYC	1 cut(s)	468
BsaJI	CCNNGG	2 cut(s)	60, 463
BsaWI	WCCGGW	1 cut(s)	129
BsaXI	ACNNNNNCTCC	4 cut(s)	101, 131, 161, 191
Bsc4I	CCNNNNNNNGG	2 cut(s)	87, 346
Bse118I	RCCGGY	1 cut(s)	129
Bse1I	ACTGG	2 cut(s)	112, 418
BseDI	CCNNGG	2 cut(s)	60, 463
BseLI	CCNNNNNNNGG	2 cut(s)	87, 346
BseNI	ACTGG	2 cut(s)	112, 418
BseRI	GAGGAG	2 cut(s)	169, 467
BseXI	GCAGC	3 cut(s)	275, 345, 402
Bsh1236I	CGCG	2 cut(s)	285, 465
BshFI	GGCC	2 cut(s)	59, 71
BshNI	GGYRCC	1 cut(s)	467
BshTI	ACCGGT	1 cut(s)	129
BsiHKAI	GWGCWC	1 cut(s)	119
BsiHKCI	CYCGRG	1 cut(s)	293
BsiSI	CCGG	4 cut(s)	120, 130, 387, 472
BslI	CCNNNNNNNGG	2 cut(s)	87, 346
BsmAI	GTCTC	1 cut(s)	325
BsmBI	CGTCTC	1 cut(s)	325
BsnI	GGCC	2 cut(s)	59, 71
BsoBI	CYCGRG	1 cut(s)	293
Bsp119I	TTCGAA	1 cut(s)	456
Bsp1286I	GDGCHC	1 cut(s)	119
Bsp143I	GATC	3 cut(s)	3, 96, 240
Bsp19I	CCATGG	1 cut(s)	60
BspACI	CCGC	8 cut(s)	38, 47, 208, 219, 285, 356, 463, 465
BspANI	GGCC	2 cut(s)	59, 71
BspFNI	CGCG	2 cut(s)	285, 465
BspHI	TCATGA	1 cut(s)	30
BspLI	GGNNCC	4 cut(s)	45, 79, 469, 476
BspQI	GCTCTTC	1 cut(s)	452
BspT104I	TTCGAA	1 cut(s)	456
BspT107I	GGYRCC	1 cut(s)	467
BsrBI	CCGCTC	1 cut(s)	49
BsrFI	RCCGGY	1 cut(s)	129
BsrI	ACTGG	2 cut(s)	112, 418
BssAI	RCCGGY	1 cut(s)	129
BssECI	CCNNGG	2 cut(s)	60, 463
BssMI	GATC	3 cut(s)	3, 96, 240
BssNI	GRCGYC	1 cut(s)	468
BssT1I	CCWWGG	1 cut(s)	60
Bst6I	CTCTTC	3 cut(s)	149, 317, 452
BstACI	GRCGYC	1 cut(s)	468
BstBAI	YACGTR	1 cut(s)	55
BstBI	TTCGAA	1 cut(s)	456
BstDSI	CCRYGG	2 cut(s)	60, 463
BstFNI	CGCG	2 cut(s)	285, 465
BstH2I	RGCGCY	1 cut(s)	471
BstHHI	GCGC	1 cut(s)	470
BstKTI	GATC	3 cut(s)	6, 99, 243
BstMAI	GTCTC	1 cut(s)	325
BstMBI	GATC	3 cut(s)	3, 96, 240
BstMWI	GCNNNNNNNGC	3 cut(s)	146, 257, 285
BstSCI	CCNGG	1 cut(s)	470
BstUI	CGCG	2 cut(s)	285, 465
BstV1I	GCAGC	3 cut(s)	275, 345, 402
BstX2I	RGATCY	1 cut(s)	96
BstXI	CCANNNNNNTGG	1 cut(s)	67
BstYI	RGATCY	1 cut(s)	96
BsuRI	GGCC	2 cut(s)	59, 71
BtgI	CCRYGG	2 cut(s)	60, 463
BtrI	CACGTC	1 cut(s)	28
BtsIMutI	CAGTG	2 cut(s)	119, 425
CaiI	CAGNNNCTG	1 cut(s)	238
CciI	TCATGA	1 cut(s)	30
CfoI	GCGC	1 cut(s)	470
Cfr10I	RCCGGY	1 cut(s)	129
Cfr13I	GGNCC	3 cut(s)	267, 300, 400
Cfr42I	CCGCGG	1 cut(s)	466
Csp6I	GTAC	2 cut(s)	373, 433
CspAI	ACCGGT	1 cut(s)	129
CviAII	CATG	6 cut(s)	31, 61, 199, 346, 397, 451
CviJI	RGCY	7 cut(s)	59, 71, 78, 238, 288, 393, 475
CviKI_1	RGCY	7 cut(s)	59, 71, 78, 238, 288, 393, 475
CviQI	GTAC	2 cut(s)	373, 433
DinI	GGCGCC	1 cut(s)	469
DpnI	GATC	3 cut(s)	5, 98, 242
DpnII	GATC	3 cut(s)	3, 96, 240
EaeI	YGGCCR	1 cut(s)	57
Eam1104I	CTCTTC	3 cut(s)	149, 317, 452
EarI	CTCTTC	3 cut(s)	149, 317, 452
Eco130I	CCWWGG	1 cut(s)	60
Eco47I	GGWCC	3 cut(s)	267, 300, 400
Eco88I	CYCGRG	1 cut(s)	293
EcoT14I	CCWWGG	1 cut(s)	60
EgeI	GGCGCC	1 cut(s)	469
EheI	GGCGCC	1 cut(s)	469
ErhI	CCWWGG	1 cut(s)	60
Esp3I	CGTCTC	1 cut(s)	325
FaeI	CATG	6 cut(s)	34, 64, 202, 349, 400, 454
FaiI	YATR	6 cut(s)	32, 62, 200, 347, 398, 452
FatI	CATG	6 cut(s)	30, 60, 198, 345, 396, 450
FauI	CCCGC	2 cut(s)	215, 363
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	6 cut(s)	219, 286, 289, 359, 391, 466
Fsp4HI	GCNGC	6 cut(s)	219, 286, 289, 359, 391, 466
GlaI	GCGC	1 cut(s)	469
GluI	GCNGC	6 cut(s)	219, 286, 289, 359, 391, 466
GsuI	CTGGAG	2 cut(s)	215, 401
HaeII	RGCGCY	1 cut(s)	471
HaeIII	GGCC	2 cut(s)	59, 71
HapII	CCGG	4 cut(s)	120, 130, 387, 472
HhaI	GCGC	1 cut(s)	470
Hin1I	GRCGYC	1 cut(s)	468
Hin1II	CATG	6 cut(s)	34, 64, 202, 349, 400, 454
Hin6I	GCGC	1 cut(s)	468
HinP1I	GCGC	1 cut(s)	468
HinfI	GANTC	1 cut(s)	351
HpaII	CCGG	4 cut(s)	120, 130, 387, 472
HphI	GGTGA	2 cut(s)	94, 298
Hpy166II	GTNNAC	2 cut(s)	300, 435
Hpy188I	TCNGA	2 cut(s)	16, 487
Hpy188III	TCNNGA	2 cut(s)	31, 232
Hpy8I	GTNNAC	2 cut(s)	300, 435
Hpy99I	CGWCG	1 cut(s)	140
HpyAV	CCTTC	1 cut(s)	175
HpyCH4IV	ACGT	2 cut(s)	27, 54
HpyCH4V	TGCA	1 cut(s)	423
HpyF10VI	GCNNNNNNNGC	3 cut(s)	146, 257, 285
HpySE526I	ACGT	2 cut(s)	27, 54
Hsp92I	GRCGYC	1 cut(s)	468
Hsp92II	CATG	6 cut(s)	34, 64, 202, 349, 400, 454
HspAI	GCGC	1 cut(s)	468
KasI	GGCGCC	1 cut(s)	467
Ksp22I	TGATCA	1 cut(s)	3
KspI	CCGCGG	1 cut(s)	466
Kzo9I	GATC	3 cut(s)	3, 96, 240
LguI	GCTCTTC	1 cut(s)	452
LmnI	GCTCC	3 cut(s)	83, 122, 480
LpnPI	CCDG	9 cut(s)	125, 133, 143, 245, 250, 400, 415, 431, 485
Lsp1109I	GCAGC	3 cut(s)	275, 345, 402
LweI	GCATC	2 cut(s)	132, 432
MaeII	ACGT	2 cut(s)	27, 54
MalI	GATC	3 cut(s)	5, 98, 242
MbiI	CCGCTC	1 cut(s)	49
MboI	GATC	3 cut(s)	3, 96, 240
MboII	GAAGA	5 cut(s)	91, 106, 136, 304, 439
MflI	RGATCY	1 cut(s)	96
MhlI	GDGCHC	1 cut(s)	119
MlsI	TGGCCA	1 cut(s)	59
MluNI	TGGCCA	1 cut(s)	59
Mly113I	GGCGCC	1 cut(s)	468
MmeI	TCCRAC	2 cut(s)	39, 207
Mox20I	TGGCCA	1 cut(s)	59
MroXI	GAANNNNTTC	1 cut(s)	98
MscI	TGGCCA	1 cut(s)	59
MslI	CAYNNNNRTG	1 cut(s)	440
Msp20I	TGGCCA	1 cut(s)	59
MspA1I	CMGCKG	2 cut(s)	358, 465
MspI	CCGG	4 cut(s)	120, 130, 387, 472
MspR9I	CCNGG	1 cut(s)	472
MvnI	CGCG	2 cut(s)	285, 465
MwoI	GCNNNNNNNGC	3 cut(s)	146, 257, 285
NarI	GGCGCC	1 cut(s)	468
NciI	CCSGG	1 cut(s)	472
NcoI	CCATGG	1 cut(s)	60
NdeII	GATC	3 cut(s)	3, 96, 240
NlaIII	CATG	6 cut(s)	34, 64, 202, 349, 400, 454
NlaIV	GGNNCC	4 cut(s)	45, 79, 469, 476
NspV	TTCGAA	1 cut(s)	456
PaeR7I	CTCGAG	1 cut(s)	293
PagI	TCATGA	1 cut(s)	30
PciSI	GCTCTTC	1 cut(s)	452
PcsI	WCGNNNNNNNCGW	1 cut(s)	249
PdmI	GAANNNNTTC	1 cut(s)	98
PfeI	GAWTC	1 cut(s)	351
PinAI	ACCGGT	1 cut(s)	129
PkrI	GCNGC	6 cut(s)	220, 287, 290, 360, 392, 467
PluTI	GGCGCC	1 cut(s)	471
Ppu21I	YACGTR	1 cut(s)	55
PspN4I	GGNNCC	4 cut(s)	45, 79, 469, 476
PspPI	GGNCC	3 cut(s)	267, 300, 400
PspXI	VCTCGAGB	1 cut(s)	293
PstNI	CAGNNNCTG	1 cut(s)	238
PsuI	RGATCY	1 cut(s)	96
RsaI	GTAC	2 cut(s)	374, 434
RsaNI	GTAC	2 cut(s)	373, 433
RseI	CAYNNNNRTG	1 cut(s)	440
SacII	CCGCGG	1 cut(s)	466
SapI	GCTCTTC	1 cut(s)	452
SatI	GCNGC	6 cut(s)	219, 286, 289, 359, 391, 466
Sau3AI	GATC	3 cut(s)	3, 96, 240
Sau96I	GGNCC	3 cut(s)	267, 300, 400
ScrFI	CCNGG	1 cut(s)	472
SduI	GDGCHC	1 cut(s)	119
SetI	ASST	3 cut(s)	30, 57, 240
SfaNI	GCATC	2 cut(s)	132, 432
SfoI	GGCGCC	1 cut(s)	469
Sfr274I	CTCGAG	1 cut(s)	293
Sfr303I	CCGCGG	1 cut(s)	466
SfuI	TTCGAA	1 cut(s)	456
SgrBI	CCGCGG	1 cut(s)	466
SinI	GGWCC	3 cut(s)	267, 300, 400
SlaI	CTCGAG	1 cut(s)	293
SmiMI	CAYNNNNRTG	1 cut(s)	440
SmlI	CTYRAG	1 cut(s)	293
SmoI	CTYRAG	1 cut(s)	293
SsiI	CCGC	8 cut(s)	38, 47, 208, 219, 285, 356, 463, 465
SspDI	GGCGCC	1 cut(s)	467
StyD4I	CCNGG	1 cut(s)	470
StyI	CCWWGG	1 cut(s)	60
TaiI	ACGT	2 cut(s)	30, 57
TaqI	TCGA	2 cut(s)	294, 456
TauI	GCSGC	3 cut(s)	221, 288, 468
TfiI	GAWTC	1 cut(s)	351
TscAI	CASTG	2 cut(s)	119, 425
TseI	GCWGC	3 cut(s)	288, 358, 390
TspDTI	ATGAA	3 cut(s)	163, 215, 439
TspGWI	ACGGA	2 cut(s)	70, 307
TspRI	CASTG	2 cut(s)	119, 425
VpaK11BI	GGWCC	3 cut(s)	267, 300, 400
XhoI	CTCGAG	1 cut(s)	293
XmnI	GAANNNNTTC	1 cut(s)	98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.