Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002064

Physical Location & Seq

Genomic Coordinates Reverse (-)

26990831 .. 26993696

Gene Structure 2866 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0257200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGATACCGGGTATGGTGTTCCTTATGATGCTCTCGACTGTACTTTTAGAGAGAGAGAGAGAGAGTCGAGAGAGAGAGAGAGAGTCCCTGGGTATCGAGCTTCTTCGGCGAAACCGTCCCTGTGAGCAGACCGAGTTGTTCTTGTTCAAGTGCCTCGTCGCCGCCGGCCAAGAGCACGTGCTCGGCTGGGGGTTTGAGTTCGCCGAGAGCGAGGCGGAGCCGGCCAGGAGCCCCGTGAAGACCGCGTTTTACGCCATTGTTGAAATGATTGAGAAATTGGATGTGAACAGTGACGGTTCAGGGAAGAAGAAGAAGAAGAAGAAGGTTCGGTTTGCTTTGAATGATGAAGATTTTGAGGACTTGAAGAAGCTACTGAAGAATTTGGGAGAGGTTGAACAGTTCTATAACTGCATTGGAGGAGTGATTGGATTGTGGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0006810 GO:0008150 GO:0009914 GO:0009926 GO:0009966 GO:0010252 GO:0010315 GO:0010329 GO:0010646 GO:0010817 GO:0010928 GO:0012505 GO:0015562 GO:0016020 GO:0022857 GO:0023051 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048583 GO:0048878 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0055085 GO:0060918 GO:0065007 GO:0065008 GO:0071944 GO:0080161

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mem_trans

Protein Analysis

146

Amino Acids

16.82

Weight (kDa)

6.0

Isoelectric Point (pI)

48.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002064)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73590
fragaria_vesca	FvH4_5g17310 FvH4_5g17310 FvH4_5g17310 FvH4_5g17310 FvH4_6g25530
malus_domestica	MD06G1226800.v1.1 MD12G1095100.v1.1 MD14G1090900.v1.1 MD14G1236300.v1.1
prunus_persica	Prupe.5G233100_v2.0.a1 Prupe.5G233100_v2.0.a1 Prupe.7G031400_v2.0.a1
pyrus_communis	pycom06g20310 pycom12g08100 pycom14g08280 pycom14g19730
rosa_chinensis	RchiOBHm_Chr2g0125421 RchiOBHm_Chr7g0178461
rosa_laevigata	RLG00000005446 RLG00000018862
rosa_multiflora	Rmu_co8305407.1_g000001 Rmu_co8511139.1_g000001 Rmu_sc0010235.1_g000007
rosa_roxburghii	Rroxscaffold_2G00118040 Rroxscaffold_3G00274900
rosa_rugosa	Rorug02G0257200 Rorug02G0257300 Rorug06G0417200 Rorug06G0417200
rosa_samantha	Rh2AG315900 Rh2BG323700 Rh2CG305900 Rh2DG342200 Rh3AG201700 Rh5AG183300 Rh5DG535000 Rh7AG015800 Rh7BG015200 Rh7CG016000 Rh7DG015600 Rh7DG015700
rosa_wichuraiana	Rw2G025490 Rw7G001240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	245
AciI	CCGC	3 cut(s)	162, 215, 243
AcoI	YGGCCR	2 cut(s)	166, 222
AcsI	RAATTY	1 cut(s)	379
AcuI	CTGAAG	1 cut(s)	395
AcvI	CACGTG	1 cut(s)	178
AfaI	GTAC	1 cut(s)	42
AgsI	TTSAA	5 cut(s)	148, 263, 340, 364, 395
AjnI	CCWGG	2 cut(s)	87, 224
AluBI	AGCT	2 cut(s)	100, 370
AluI	AGCT	2 cut(s)	100, 370
Alw21I	GWGCWC	2 cut(s)	177, 183
AoxI	GGCC	2 cut(s)	166, 222
ApoI	RAATTY	1 cut(s)	379
AsuC2I	CCSGG	1 cut(s)	9
BanII	GRGCYC	1 cut(s)	233
BbrPI	CACGTG	1 cut(s)	178
BbsI	GAAGAC	1 cut(s)	245
Bbv12I	GWGCWC	2 cut(s)	177, 183
BciT130I	CCWGG	2 cut(s)	89, 226
BcnI	CCSGG	1 cut(s)	9
BisI	GCNGC	1 cut(s)	162
BlsI	GCNGC	1 cut(s)	163
Bme1390I	CCNGG	3 cut(s)	9, 89, 226
BmiI	GGNNCC	2 cut(s)	219, 230
BmrFI	CCNGG	3 cut(s)	9, 89, 226
BmsI	GCATC	1 cut(s)	18
BpiI	GAAGAC	1 cut(s)	245
BpuMI	CCSGG	1 cut(s)	9
BsaAI	YACGTR	1 cut(s)	178
BsaJI	CCNNGG	2 cut(s)	87, 88
Bse118I	RCCGGY	2 cut(s)	164, 220
BseBI	CCWGG	2 cut(s)	89, 226
BseDI	CCNNGG	2 cut(s)	87, 88
BseGI	GGATG	1 cut(s)	286
BseRI	GAGGAG	1 cut(s)	432
BseYI	CCCAGC	1 cut(s)	186
Bsh1236I	CGCG	1 cut(s)	245
BshFI	GGCC	2 cut(s)	168, 224
BsiHKAI	GWGCWC	2 cut(s)	177, 183
BsiSI	CCGG	3 cut(s)	8, 165, 221
BslFI	GGGAC	2 cut(s)	70, 102
BsmFI	GGGAC	2 cut(s)	70, 102
BsnI	GGCC	2 cut(s)	168, 224
Bsp1286I	GDGCHC	3 cut(s)	177, 183, 233
BspACI	CCGC	3 cut(s)	162, 215, 243
BspANI	GGCC	2 cut(s)	168, 224
BspFNI	CGCG	1 cut(s)	245
BspLI	GGNNCC	2 cut(s)	219, 230
BsrFI	RCCGGY	2 cut(s)	164, 220
BssAI	RCCGGY	2 cut(s)	164, 220
BssECI	CCNNGG	2 cut(s)	87, 88
Bst2UI	CCWGG	2 cut(s)	89, 226
Bst4CI	ACNGT	5 cut(s)	40, 116, 290, 296, 399
BstBAI	YACGTR	1 cut(s)	178
BstC8I	GCNNGC	2 cut(s)	166, 222
BstF5I	GGATG	1 cut(s)	286
BstFNI	CGCG	1 cut(s)	245
BstMWI	GCNNNNNNNGC	3 cut(s)	106, 221, 251
BstNI	CCWGG	2 cut(s)	89, 226
BstSCI	CCNGG	3 cut(s)	7, 87, 224
BstUI	CGCG	1 cut(s)	245
BstV2I	GAAGAC	1 cut(s)	245
BsuRI	GGCC	2 cut(s)	168, 224
BtsCI	GGATG	1 cut(s)	286
BtsIMutI	CAGTG	1 cut(s)	295
Cac8I	GCNNGC	2 cut(s)	166, 222
Cfr10I	RCCGGY	2 cut(s)	164, 220
Csp6I	GTAC	1 cut(s)	41
CviJI	RGCY	7 cut(s)	100, 168, 186, 220, 224, 231, 370
CviKI_1	RGCY	7 cut(s)	100, 168, 186, 220, 224, 231, 370
CviQI	GTAC	1 cut(s)	41
EaeI	YGGCCR	2 cut(s)	166, 222
EciI	GGCGGA	1 cut(s)	230
Eco24I	GRGCYC	1 cut(s)	233
Eco57I	CTGAAG	1 cut(s)	395
Eco72I	CACGTG	1 cut(s)	178
EcoRII	CCWGG	2 cut(s)	87, 224
EcoT38I	GRGCYC	1 cut(s)	233
FaiI	YATR	3 cut(s)	14, 26, 405
FaqI	GGGAC	2 cut(s)	70, 102
Fnu4HI	GCNGC	1 cut(s)	162
FokI	GGATG	1 cut(s)	293
FriOI	GRGCYC	1 cut(s)	233
Fsp4HI	GCNGC	1 cut(s)	162
GluI	GCNGC	1 cut(s)	162
GsaI	CCCAGC	1 cut(s)	190
HaeIII	GGCC	2 cut(s)	168, 224
HapII	CCGG	3 cut(s)	8, 165, 221
HinfI	GANTC	2 cut(s)	64, 83
HpaII	CCGG	3 cut(s)	8, 165, 221
Hpy166II	GTNNAC	1 cut(s)	286
Hpy188III	TCNNGA	2 cut(s)	34, 68
Hpy8I	GTNNAC	1 cut(s)	286
Hpy99I	CGWCG	1 cut(s)	161
HpyAV	CCTTC	1 cut(s)	316
HpyCH4III	ACNGT	5 cut(s)	40, 116, 290, 296, 399
HpyCH4IV	ACGT	1 cut(s)	177
HpyCH4V	TGCA	1 cut(s)	411
HpyF10VI	GCNNNNNNNGC	3 cut(s)	106, 221, 251
HpySE526I	ACGT	1 cut(s)	177
KroI	GCCGGC	2 cut(s)	164, 220
KroNI	GCCGGC	2 cut(s)	166, 222
LmnI	GCTCC	2 cut(s)	217, 228
LweI	GCATC	1 cut(s)	18
MaeII	ACGT	1 cut(s)	177
MaeIII	GTNAC	1 cut(s)	290
MhlI	GDGCHC	3 cut(s)	177, 183, 233
MluCI	AATT	2 cut(s)	275, 379
MlyI	GAGTC	2 cut(s)	73, 92
MnlI	CCTC	5 cut(s)	164, 205, 349, 382, 410
MroNI	GCCGGC	2 cut(s)	164, 220
MspI	CCGG	3 cut(s)	8, 165, 221
MspR9I	CCNGG	3 cut(s)	9, 89, 226
MvaI	CCWGG	2 cut(s)	89, 226
MvnI	CGCG	1 cut(s)	245
MwoI	GCNNNNNNNGC	3 cut(s)	106, 221, 251
NaeI	GCCGGC	2 cut(s)	166, 222
NciI	CCSGG	1 cut(s)	9
NgoMIV	GCCGGC	2 cut(s)	164, 220
NlaIV	GGNNCC	2 cut(s)	219, 230
NmeAIII	GCCGAG	2 cut(s)	162, 229
NmuCI	GTSAC	1 cut(s)	290
PasI	CCCWGGG	1 cut(s)	88
PcsI	WCGNNNNNNNCGW	2 cut(s)	112, 207
PdiI	GCCGGC	2 cut(s)	166, 222
PkrI	GCNGC	1 cut(s)	163
PleI	GAGTC	2 cut(s)	72, 91
PmaCI	CACGTG	1 cut(s)	178
PmlI	CACGTG	1 cut(s)	178
PpsI	GAGTC	2 cut(s)	72, 91
Ppu21I	YACGTR	1 cut(s)	178
Psp6I	CCWGG	2 cut(s)	87, 224
PspCI	CACGTG	1 cut(s)	178
PspFI	CCCAGC	1 cut(s)	186
PspGI	CCWGG	2 cut(s)	87, 224
PspN4I	GGNNCC	2 cut(s)	219, 230
RsaI	GTAC	1 cut(s)	42
RsaNI	GTAC	1 cut(s)	41
SatI	GCNGC	1 cut(s)	162
SchI	GAGTC	2 cut(s)	73, 92
ScrFI	CCNGG	3 cut(s)	9, 89, 226
SduI	GDGCHC	3 cut(s)	177, 183, 233
SetI	ASST	5 cut(s)	102, 180, 327, 372, 393
SfaNI	GCATC	1 cut(s)	18
Sse9I	AATT	2 cut(s)	275, 379
SsiI	CCGC	3 cut(s)	162, 215, 243
StyD4I	CCNGG	3 cut(s)	7, 87, 224
TaaI	ACNGT	5 cut(s)	40, 116, 290, 296, 399
TaiI	ACGT	1 cut(s)	180
TaqI	TCGA	3 cut(s)	35, 67, 96
TaqII	GACCGA	1 cut(s)	146
TasI	AATT	2 cut(s)	275, 379
TatI	WGTACW	1 cut(s)	40
TauI	GCSGC	1 cut(s)	164
TscAI	CASTG	1 cut(s)	295
TseFI	GTSAC	1 cut(s)	290
Tsp45I	GTSAC	1 cut(s)	290
TspDTI	ATGAA	1 cut(s)	360
TspRI	CASTG	1 cut(s)	295
XapI	RAATTY	1 cut(s)	379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.