Rh7DG015600

May act as a component of the auxin efflux carrier

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0002064
Physical Location & Seq
Reverse (-)
1264438 .. 1265661
1224 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG015600.1

Sequence Viewer

Length: 375 bp
ATGCCAGCAATCATAGCAAAGTCGATAGCCATTCTATCAGACGCAGGGCTTGGGATGGCCATGTTCAGTCTTGGTCTGTTTATGGCTTTACAACCAAGGATCATAGCATGTGGAAATTCCATTGCAGCTTTTACTATGGCTGTGAGATTCCTTACAGGTCCAGCTGTCATGGCAGCTGCTTCCATTGCTGTTGGCCTTAGGGGCACTCTCTTACATGTTGCCATTGTCCAGGCAGCTCTACCCCAAGGAATTGTCCCCTTTGTCTTTGCCAAGGAATACAACGTACACCCTGATATTCTCAGCACAGGAGTTATATTCGGCATGTTGATCGCGTTGCCCATTACGCTTGTCTACTACATATTGCTGGGGCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005911 GO:0006810 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0009314 GO:0009416 GO:0009505 GO:0009506 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009639 GO:0009640 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009908 GO:0009914 GO:0009921 GO:0009925 GO:0009926 GO:0009965 GO:0009966 GO:0009987 GO:0010016 GO:0010033 GO:0010051 GO:0010154 GO:0010229 GO:0010252 GO:0010315 GO:0010329 GO:0010338 GO:0010358 GO:0010646 GO:0010817 GO:0010928 GO:0012505 GO:0015562 GO:0016020 GO:0016021 GO:0016323 GO:0022414 GO:0022622 GO:0022857 GO:0023051 GO:0023052 GO:0030054 GO:0030312 GO:0031224 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0045177 GO:0045178 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048532 GO:0048583 GO:0048598 GO:0048608 GO:0048646 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048830 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055044 GO:0055085 GO:0060918 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0080161 GO:0090567 GO:0090698 GO:0098590 GO:0098796 GO:0098797 GO:0099402 GO:1905392 GO:1905393
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mem_trans

Protein Analysis

124

Amino Acids

12.9

Weight (kDa)

9.03

Isoelectric Point (pI)

35.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mem_trans PF03547 3 - 119 1.1e-39 Membrane transport protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 351
AccII CGCG 1 cut(s) 332
AclWI GGATC 1 cut(s) 107
AcoI YGGCCR 1 cut(s) 57
AcsI RAATTY 1 cut(s) 115
AfaI GTAC 1 cut(s) 285
AflIII ACRYGT 1 cut(s) 214
AjnI CCWGG 1 cut(s) 228
AluBI AGCT 4 cut(s) 128, 164, 176, 236
AluI AGCT 4 cut(s) 128, 164, 176, 236
AlwI GGATC 1 cut(s) 107
AoxI GGCC 2 cut(s) 57, 193
ApeKI GCWGC 4 cut(s) 125, 173, 176, 233
ApoI RAATTY 1 cut(s) 115
AspS9I GGNCC 1 cut(s) 158
AvaII GGWCC 1 cut(s) 158
AxyI CCTNAGG 1 cut(s) 197
BaeGI GKGCMC 1 cut(s) 206
BalI TGGCCA 1 cut(s) 59
BbvI GCAGC 4 cut(s) 137, 163, 185, 245
BccI CCATC 1 cut(s) 49
BcgI CGANNNNNNTGC 2 cut(s) 310, 344
BciT130I CCWGG 1 cut(s) 230
BglI GCCNNNNNGGC 1 cut(s) 201
BisI GCNGC 4 cut(s) 126, 174, 177, 234
BlsI GCNGC 4 cut(s) 127, 175, 178, 235
Bme1390I CCNGG 1 cut(s) 230
Bme18I GGWCC 1 cut(s) 158
BmgT120I GGNCC 1 cut(s) 158
BmrFI CCNGG 1 cut(s) 230
BsaJI CCNNGG 3 cut(s) 95, 244, 270
Bse21I CCTNAGG 1 cut(s) 197
Bse3DI GCAATG 2 cut(s) 120, 183
BseBI CCWGG 1 cut(s) 230
BseDI CCNNGG 3 cut(s) 95, 244, 270
BseGI GGATG 1 cut(s) 60
BseMI GCAATG 2 cut(s) 120, 183
BseMII CTCAG 1 cut(s) 313
BseSI GKGCMC 1 cut(s) 206
BseXI GCAGC 4 cut(s) 137, 163, 185, 245
BseYI CCCAGC 1 cut(s) 364
Bsh1236I CGCG 1 cut(s) 332
BshFI GGCC 2 cut(s) 59, 195
BslFI GGGAC 1 cut(s) 239
BsmFI GGGAC 1 cut(s) 239
BsnI GGCC 2 cut(s) 59, 195
Bsp1286I GDGCHC 1 cut(s) 206
Bsp143I GATC 2 cut(s) 99, 327
BspANI GGCC 2 cut(s) 59, 195
BspCNI CTCAG 1 cut(s) 312
BspFNI CGCG 1 cut(s) 332
BspPI GGATC 1 cut(s) 107
BsrDI GCAATG 2 cut(s) 120, 183
BssECI CCNNGG 3 cut(s) 95, 244, 270
BssMI GATC 2 cut(s) 99, 327
BssT1I CCWWGG 3 cut(s) 95, 244, 270
Bst2UI CCWGG 1 cut(s) 230
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 2 cut(s) 197, 299
BstF5I GGATG 1 cut(s) 60
BstFNI CGCG 1 cut(s) 332
BstKTI GATC 2 cut(s) 102, 330
BstMBI GATC 2 cut(s) 99, 327
BstMWI GCNNNNNNNGC 5 cut(s) 14, 170, 185, 201, 343
BstNI CCWGG 1 cut(s) 230
BstNSI RCATGY 3 cut(s) 111, 218, 325
BstSCI CCNGG 1 cut(s) 228
BstSLI GKGCMC 1 cut(s) 206
BstUI CGCG 1 cut(s) 332
BstV1I GCAGC 4 cut(s) 137, 163, 185, 245
Bsu36I CCTNAGG 1 cut(s) 197
BsuRI GGCC 2 cut(s) 59, 195
BtsCI GGATG 1 cut(s) 60
Cac8I GCNNGC 1 cut(s) 6
Cfr13I GGNCC 1 cut(s) 158
CseI GACGC 1 cut(s) 50
Csp6I GTAC 1 cut(s) 284
CviAII CATG 5 cut(s) 61, 108, 169, 215, 322
CviQI GTAC 1 cut(s) 284
DdeI CTNAG 2 cut(s) 197, 299
DpnI GATC 2 cut(s) 101, 329
DpnII GATC 2 cut(s) 99, 327
EaeI YGGCCR 1 cut(s) 57
Eco130I CCWWGG 3 cut(s) 95, 244, 270
Eco47I GGWCC 1 cut(s) 158
Eco81I CCTNAGG 1 cut(s) 197
EcoRII CCWGG 1 cut(s) 228
EcoT14I CCWWGG 3 cut(s) 95, 244, 270
ErhI CCWWGG 3 cut(s) 95, 244, 270
FaeI CATG 5 cut(s) 64, 111, 172, 218, 325
FaqI GGGAC 1 cut(s) 239
FatI CATG 5 cut(s) 60, 107, 168, 214, 321
FblI GTMKAC 1 cut(s) 351
Fnu4HI GCNGC 4 cut(s) 126, 174, 177, 234
FokI GGATG 1 cut(s) 67
Fsp4HI GCNGC 4 cut(s) 126, 174, 177, 234
GluI GCNGC 4 cut(s) 126, 174, 177, 234
GsaI CCCAGC 1 cut(s) 368
HaeIII GGCC 2 cut(s) 59, 195
HgaI GACGC 1 cut(s) 50
Hin1II CATG 5 cut(s) 64, 111, 172, 218, 325
HinfI GANTC 1 cut(s) 147
Hpy166II GTNNAC 2 cut(s) 286, 352
Hpy188I TCNGA 1 cut(s) 40
Hpy8I GTNNAC 2 cut(s) 286, 352
HpyCH4IV ACGT 1 cut(s) 282
HpyCH4V TGCA 1 cut(s) 125
HpyF10VI GCNNNNNNNGC 5 cut(s) 14, 170, 185, 201, 343
HpyF3I CTNAG 2 cut(s) 197, 299
HpySE526I ACGT 1 cut(s) 282
Hsp92II CATG 5 cut(s) 64, 111, 172, 218, 325
Kzo9I GATC 2 cut(s) 99, 327
LpnPI CCDG 9 cut(s) 18, 30, 141, 174, 215, 242, 291, 303, 350
Lsp1109I GCAGC 4 cut(s) 137, 163, 185, 245
MaeII ACGT 1 cut(s) 282
MalI GATC 2 cut(s) 101, 329
MboI GATC 2 cut(s) 99, 327
MhlI GDGCHC 1 cut(s) 206
MlsI TGGCCA 1 cut(s) 59
MluCI AATT 2 cut(s) 115, 249
MluNI TGGCCA 1 cut(s) 59
Mox20I TGGCCA 1 cut(s) 59
MscI TGGCCA 1 cut(s) 59
Msp20I TGGCCA 1 cut(s) 59
MspA1I CMGCKG 2 cut(s) 164, 176
MspR9I CCNGG 1 cut(s) 230
MvaI CCWGG 1 cut(s) 230
MvnI CGCG 1 cut(s) 332
MwoI GCNNNNNNNGC 5 cut(s) 14, 170, 185, 201, 343
NdeII GATC 2 cut(s) 99, 327
NlaIII CATG 5 cut(s) 64, 111, 172, 218, 325
NspI RCATGY 3 cut(s) 111, 218, 325
PciI ACATGT 1 cut(s) 214
PfeI GAWTC 1 cut(s) 147
PkrI GCNGC 4 cut(s) 127, 175, 178, 235
PscI ACATGT 1 cut(s) 214
Psp6I CCWGG 1 cut(s) 228
PspFI CCCAGC 1 cut(s) 364
PspGI CCWGG 1 cut(s) 228
PspPI GGNCC 1 cut(s) 158
PvuII CAGCTG 2 cut(s) 164, 176
RsaI GTAC 1 cut(s) 285
RsaNI GTAC 1 cut(s) 284
SatI GCNGC 4 cut(s) 126, 174, 177, 234
Sau3AI GATC 2 cut(s) 99, 327
Sau96I GGNCC 1 cut(s) 158
ScrFI CCNGG 1 cut(s) 230
SduI GDGCHC 1 cut(s) 206
SetI ASST 6 cut(s) 130, 160, 166, 178, 238, 285
SinI GGWCC 1 cut(s) 158
Sse9I AATT 2 cut(s) 115, 249
StyD4I CCNGG 1 cut(s) 228
StyI CCWWGG 3 cut(s) 95, 244, 270
TaiI ACGT 1 cut(s) 285
TaqI TCGA 1 cut(s) 23
TasI AATT 2 cut(s) 115, 249
TfiI GAWTC 1 cut(s) 147
TseI GCWGC 4 cut(s) 125, 173, 176, 233
VpaK11BI GGWCC 1 cut(s) 158
XapI RAATTY 1 cut(s) 115
XceI RCATGY 3 cut(s) 111, 218, 325
XmiI GTMKAC 1 cut(s) 351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.