FvH4_6g31081

MAR-binding filament-like protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
24254969 .. 24260299
5331 bp
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UTR
Exon/CDS
Intron
FvH4_6g31081.t9

Sequence Viewer

Length: 2163 bp
ATGGGTTTTGCAATGCGGACCTCCTGCTTCTTACACTCTCCCCTATTCCCCTTCTCTTCTTCTTCTCACTCCAAAACCAGAAATGCAGAGACCAACTCAAGAACAAGAAGAACAAGAAGCAGCAGAACGACAACCGTGGCAATGTCGTCTATGCGCCAAGACGACATCAACGACGGCGATCACGGCAAGCGGAGGGCTATTCTCTTTGTGGGTATCACTGTTCTTCCTCTGTTACAACTCAGGGCTCACGCCTTTGAACCCTTTCCCACTAAAGAAAGTGAGCCAAAGACTCCAGACAGTAACATAAAGGCAGAGGTACTGCAAGGAGATGCCCCAAATCCCATTTTGTCTATCCTGAATGGTCTTGGTATTTTCAGCTCTGGTGTCATCGGTGCTTTTTATGGATTGGCTGAGAAAGAAAAGAAAGCCGCTGAAGTAATAGTAGAATCTATGAAGAACCAGCTGAAAGAAAAGGAAGTTGCTATTGCTTCCTTGGAGAAGAACTTTGAGTCAAAGCTACTGAATGAACAGGAAGAACGGAGAAAGCAACTTGGAAAAGCAAAGGAAGAGCAGAGGTCTCTAACAGACCAACTAAATTCAGCCAAAAGTACTATTGTGGGCTTAGGGAAGGAGCTAAACGGCGAGAAGAAGTTGATTGAGGAGCTTAAAGTTCAAAGTGAAAACCTTAAAACAAACCTTTCAAAGGCTACCGAAGATAAGGTAGAGCTTGAAGAAAGTTTGAAGGAAAAGCTTCACTCCATCGAAGATTTGCAGGGAAGGATTAATTTGCTCAATTTGGAACTGAAGGACAGAGAGAGTAATGTTCAAAGCCTTAGCTCTTCTCTTGCTGAAAAGGATTTGGAGTTGAAGAACTTAAAGACTGCCTACAACCAAACTAAGGATGAACTAGCTCATGCAGTTTCTGATATTCAAGAATTAAAAGTCGAACTCCTAAAGAATCAAAAGGAACTGGAACTGAAGAGTTACACTGTGGATGAACTGAATTCAACAGTAAGTTCTTTGACTTCTGAGAAAGATGATTCTAAGAGGAAGTATGATGCTATTCAGGAGGAATACGATAATCTGAAATCATCCTCTGGAAAAAAGGCAGCTGCGGATGCTAATCTTTTGGGGGAAAAAGATGAGGAACTTCAGCAGCTAAAGGAGAAACTTGAATTTTCATTGGCTGAATCAAGTAGAAGCAAACAGATAATTGCTGATTTGACCCGAGAGAAGGAAACCTTGAGGGAAATGCTGGATAAAGCATTGAACAGTGAAGAGAACTTGAAACATGAACTCCATATCACTCAGGAAGCTCTTGGAAAATCTAGAAATGAAGTTTCAAATCTGGAACATCAATTAAAACAGTCTAGAAATTTGTGTACCAAACTTGAAGCTGAGATCTCTCGGGTCCAGGCTGAGTTTACTGGAGTTAGGGAATCACTGCAGAGGAGCCTTGATGAGGCTACATCAAGTGGTGATGTGATTGCTACTGAGCTTGCTTCAGTAAAAGAACTTTTAAAGAAGACAGAAGAGGAGCTGCAGGGTGTGTCTCATCAACTAGCAGTTGTTGCAGAGAATCGTGATAGCCTGCAGAAAGAATTGGTTGATGTATATAAAACAGCTGACAAAGCTTCTCATGATTTAAAAGAAGAGAAGGAGCGAGTTTCTTCTCTTAAGAAAGAACTTCAGTCTCTGGAGAAGCAAATTTCAGAGAACAATAAGTCCCGTAAGTGTCTTGAGACAGACCTGGAAGAGGCTACAAAATCACTTGATGAGATGAACCGAAATGCTTTAGTACTTTCCAAAGAGTTAGAGAAGGCTAATTCTCTAATTTCTAACCTTGAAGATGAGAAAGAGGTGTTTTACAAGTCCCTTACAGAGCAAAAGAATGCATCCAAAGAGGCCCGTGAAAACATGGAAGACGCCCATAATCTTGTCATGAAACTTGGCAAGGAAAGGGTGAGTCTGGAGAAGAGAGCAAAGAAAATGGAAGAGGAATTGGCATCTGCCAAGGGTGAAATATTGCGGCTGAGGAGTAAAATAAAATCTTCAAAAGATCTTGTAAATAATGAGAAACCACAGAAAGCCAAGGCTGAAGGTGCTGTCACTGTTACTGCAAAGAGAGGTAGGAGGAGAAAGGCTCCTGCTGAATCAGAGTGA

Protein Analysis

721

Amino Acids

81.03

Weight (kDa)

6.06

Isoelectric Point (pI)

51.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CCDC39 PF24161 379 - 551 5.8e-07 Coiled-coil domain-containing protein 39
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 16, 190, 429, 1115, 2029
AcsI RAATTY 5 cut(s) 595, 1003, 1175, 1375, 1707
AcuI CTGAAG 7 cut(s) 453, 824, 998, 1136, 1488, 1673, 2118
AcyI GRCGYC 1 cut(s) 1926
AfaI GTAC 4 cut(s) 318, 610, 1384, 1800
AfiI CCNNNNNNNGG 5 cut(s) 703, 898, 1234, 1462, 1756
AflII CTTAAG 1 cut(s) 1676
AjnI CCWGG 2 cut(s) 1413, 1749
AloI GAACNNNNNNTCC 2 cut(s) 1709, 1741
Alw26I GTCTC 5 cut(s) 83, 582, 1557, 1698, 1736
AlwNI CAGNNNCTG 2 cut(s) 923, 1696
Ama87I CYCGRG 2 cut(s) 1227, 1407
AoxI GGCC 1 cut(s) 1905
ApeKI GCWGC 5 cut(s) 120, 1109, 1112, 1156, 1540
ApoI RAATTY 5 cut(s) 595, 1003, 1175, 1375, 1707
AseI ATTAAT 1 cut(s) 783
Asp700I GAANNNNTTC 2 cut(s) 261, 750
AspLEI GCGC 1 cut(s) 156
AspS9I GGNCC 3 cut(s) 18, 1411, 1906
AsuHPI GGTGA 3 cut(s) 1490, 1975, 2030
AvaI CYCGRG 2 cut(s) 1227, 1407
AvaII GGWCC 2 cut(s) 18, 1411
BanII GRGCYC 1 cut(s) 247
BbsI GAAGAC 2 cut(s) 1532, 1929
BbvCI CCTCAGC 1 cut(s) 2033
BbvI GCAGC 5 cut(s) 132, 1099, 1121, 1168, 1527
BccI CCATC 1 cut(s) 767
BceAI ACGGC 3 cut(s) 190, 199, 655
BciT130I CCWGG 2 cut(s) 1415, 1751
BcoDI GTCTC 5 cut(s) 83, 582, 1557, 1698, 1736
BfaI CTAG 4 cut(s) 908, 1329, 1371, 1562
BfmI CTRYAG 3 cut(s) 1445, 1541, 1592
BfrI CTTAAG 1 cut(s) 1676
BglII AGATCT 2 cut(s) 1401, 2059
BisI GCNGC 7 cut(s) 121, 429, 1110, 1113, 1157, 1541, 2030
BlsI GCNGC 7 cut(s) 122, 430, 1111, 1114, 1158, 1542, 2031
BmcAI AGTACT 2 cut(s) 610, 1800
Bme1390I CCNGG 2 cut(s) 1415, 1751
Bme18I GGWCC 2 cut(s) 18, 1411
BmeT110I CYCGRG 2 cut(s) 1227, 1407
BmgT120I GGNCC 3 cut(s) 18, 1411, 1906
BmiI GGNNCC 3 cut(s) 1412, 1454, 2145
BmrFI CCNGG 2 cut(s) 1415, 1751
BmsI GCATC 5 cut(s) 319, 1048, 1108, 1904, 2015
BpiI GAAGAC 2 cut(s) 1532, 1929
BplI GAGNNNNNCTC 4 cut(s) 80, 112, 2128, 2160
BpmI CTGGAG 4 cut(s) 276, 1449, 1718, 1991
Bpu10I CCTNAGC 3 cut(s) 622, 833, 2033
BpuEI CTTGAG 3 cut(s) 82, 1264, 1760
BsaBI GATNNNNATC 1 cut(s) 1122
BsaHI GRCGYC 1 cut(s) 1926
BsaI GGTCTC 2 cut(s) 83, 582
BsaJI CCNNGG 4 cut(s) 135, 492, 2013, 2091
BsaXI ACNNNNNCTCC 2 cut(s) 1281, 1311
Bsc4I CCNNNNNNNGG 5 cut(s) 703, 898, 1234, 1462, 1756
Bse1I ACTGG 2 cut(s) 975, 1432
Bse3DI GCAATG 2 cut(s) 18, 147
Bse8I GATNNNNATC 1 cut(s) 1122
BseBI CCWGG 2 cut(s) 1415, 1751
BseDI CCNNGG 4 cut(s) 135, 492, 2013, 2091
BseGI GGATG 5 cut(s) 907, 1000, 1091, 1123, 1895
BseJI GATNNNNATC 1 cut(s) 1122
BseLI CCNNNNNNNGG 5 cut(s) 703, 898, 1234, 1462, 1756
BseMI GCAATG 2 cut(s) 18, 147
BseMII CTCAG 8 cut(s) 253, 402, 1020, 1322, 1389, 1410, 1485, 2024
BseNI ACTGG 2 cut(s) 975, 1432
BseRI GAGGAG 5 cut(s) 674, 1465, 1550, 2050, 2149
BseXI GCAGC 5 cut(s) 132, 1099, 1121, 1168, 1527
BshFI GGCC 1 cut(s) 1907
BsiHKCI CYCGRG 2 cut(s) 1227, 1407
BslFI GGGAC 2 cut(s) 1711, 1858
BslI CCNNNNNNNGG 5 cut(s) 703, 898, 1234, 1462, 1756
BsmAI GTCTC 5 cut(s) 83, 582, 1557, 1698, 1736
BsmFI GGGAC 2 cut(s) 1711, 1858
BsmI GAATGC 1 cut(s) 1897
BsnI GGCC 1 cut(s) 1907
Bso31I GGTCTC 2 cut(s) 83, 582
BsoBI CYCGRG 2 cut(s) 1227, 1407
Bsp1286I GDGCHC 1 cut(s) 247
Bsp143I GATC 3 cut(s) 178, 1401, 2059
BspACI CCGC 5 cut(s) 16, 190, 429, 1115, 2029
BspANI GGCC 1 cut(s) 1907
BspCNI CTCAG 8 cut(s) 252, 403, 1021, 1321, 1390, 1411, 1486, 2025
BspHI TCATGA 2 cut(s) 1639, 1941
BspLI GGNNCC 3 cut(s) 1412, 1454, 2145
BspMAI CTGCAG 3 cut(s) 1449, 1545, 1596
BspQI GCTCTTC 2 cut(s) 561, 844
BspTI CTTAAG 1 cut(s) 1676
BspTNI GGTCTC 2 cut(s) 83, 582
BsrDI GCAATG 2 cut(s) 18, 147
BsrI ACTGG 2 cut(s) 975, 1432
BssECI CCNNGG 4 cut(s) 135, 492, 2013, 2091
BssMI GATC 3 cut(s) 178, 1401, 2059
BssNI GRCGYC 1 cut(s) 1926
BssT1I CCWWGG 3 cut(s) 492, 2013, 2091
Bst2UI CCWGG 2 cut(s) 1415, 1751
Bst4CI ACNGT 8 cut(s) 136, 220, 299, 991, 1012, 1274, 1368, 2113
BstACI GRCGYC 1 cut(s) 1926
BstAFI CTTAAG 1 cut(s) 1676
BstAPI GCANNNNNTGC 1 cut(s) 1571
BstC8I GCNNGC 3 cut(s) 188, 1500, 1592
BstDSI CCRYGG 1 cut(s) 135
BstENI CCTNNNNNAGG 3 cut(s) 701, 1460, 1754
BstF5I GGATG 5 cut(s) 907, 1000, 1091, 1123, 1895
BstHHI GCGC 1 cut(s) 156
BstKTI GATC 3 cut(s) 181, 1404, 2062
BstMAI GTCTC 5 cut(s) 83, 582, 1557, 1698, 1736
BstMBI GATC 3 cut(s) 178, 1401, 2059
BstMWI GCNNNNNNNGC 5 cut(s) 183, 1118, 1571, 1631, 2102
BstNI CCWGG 2 cut(s) 1415, 1751
BstSCI CCNGG 2 cut(s) 1413, 1749
BstSFI CTRYAG 3 cut(s) 1445, 1541, 1592
BstV1I GCAGC 5 cut(s) 132, 1099, 1121, 1168, 1527
BstV2I GAAGAC 2 cut(s) 1532, 1929
BstX2I RGATCY 2 cut(s) 1401, 2059
BstYI RGATCY 2 cut(s) 1401, 2059
BsuRI GGCC 1 cut(s) 1907
BtgI CCRYGG 1 cut(s) 135
BtsCI GGATG 5 cut(s) 907, 1000, 1091, 1123, 1895
BtsI GCAGTG 1 cut(s) 1442
BtsIMutI CAGTG 5 cut(s) 216, 987, 1279, 1442, 2109
Cac8I GCNNGC 3 cut(s) 188, 1500, 1592
CaiI CAGNNNCTG 2 cut(s) 923, 1696
CciI TCATGA 2 cut(s) 1639, 1941
CfoI GCGC 1 cut(s) 156
Cfr13I GGNCC 3 cut(s) 18, 1411, 1906
CseI GACGC 1 cut(s) 1934
Csp6I GTAC 4 cut(s) 317, 609, 1383, 1799
CviAII CATG 5 cut(s) 914, 1292, 1640, 1918, 1942
CviQI GTAC 4 cut(s) 317, 609, 1383, 1799
DpnI GATC 3 cut(s) 180, 1403, 2061
DpnII GATC 3 cut(s) 178, 1401, 2059
DraI TTTAAA 2 cut(s) 1521, 1647
Eco130I CCWWGG 3 cut(s) 492, 2013, 2091
Eco24I GRGCYC 1 cut(s) 247
Eco31I GGTCTC 2 cut(s) 83, 582
Eco47I GGWCC 2 cut(s) 18, 1411
Eco57I CTGAAG 7 cut(s) 453, 824, 998, 1136, 1488, 1673, 2118
Eco88I CYCGRG 2 cut(s) 1227, 1407
EcoNI CCTNNNNNAGG 3 cut(s) 701, 1460, 1754
EcoRI GAATTC 1 cut(s) 1003
EcoRII CCWGG 2 cut(s) 1413, 1749
EcoT14I CCWWGG 3 cut(s) 492, 2013, 2091
EcoT22I ATGCAT 1 cut(s) 1897
EcoT38I GRGCYC 1 cut(s) 247
ErhI CCWWGG 3 cut(s) 492, 2013, 2091
FaeI CATG 5 cut(s) 917, 1295, 1643, 1921, 1945
FalI AAGNNNNNCTT 2 cut(s) 1226, 1258
FaqI GGGAC 2 cut(s) 1711, 1858
FatI CATG 5 cut(s) 913, 1291, 1639, 1917, 1941
Fnu4HI GCNGC 7 cut(s) 121, 429, 1110, 1113, 1157, 1541, 2030
FokI GGATG 5 cut(s) 914, 1007, 1078, 1130, 1882
FriOI GRGCYC 1 cut(s) 247
Fsp4HI GCNGC 7 cut(s) 121, 429, 1110, 1113, 1157, 1541, 2030
FspBI CTAG 4 cut(s) 908, 1329, 1371, 1562
GlaI GCGC 1 cut(s) 155
GluI GCNGC 7 cut(s) 121, 429, 1110, 1113, 1157, 1541, 2030
GsuI CTGGAG 4 cut(s) 276, 1449, 1718, 1991
HaeIII GGCC 1 cut(s) 1907
HgaI GACGC 1 cut(s) 1934
HhaI GCGC 1 cut(s) 156
Hin1I GRCGYC 1 cut(s) 1926
Hin1II CATG 5 cut(s) 917, 1295, 1643, 1921, 1945
Hin6I GCGC 1 cut(s) 154
HinP1I GCGC 1 cut(s) 154
HindIII AAGCTT 2 cut(s) 749, 1632
HphI GGTGA 3 cut(s) 1490, 1975, 2030
Hpy166II GTNNAC 2 cut(s) 1383, 1425
Hpy188I TCNGA 5 cut(s) 925, 1030, 1086, 1714, 2158
Hpy8I GTNNAC 2 cut(s) 1383, 1425
Hpy99I CGWCG 1 cut(s) 176
HpyAV CCTTC 9 cut(s) 61, 622, 736, 771, 799, 1228, 1651, 1813, 2093
HpyCH4III ACNGT 8 cut(s) 136, 220, 299, 991, 1012, 1274, 1368, 2113
HpyF10VI GCNNNNNNNGC 5 cut(s) 183, 1118, 1571, 1631, 2102
Hsp92I GRCGYC 1 cut(s) 1926
Hsp92II CATG 5 cut(s) 917, 1295, 1643, 1921, 1945
HspAI GCGC 1 cut(s) 154
Kzo9I GATC 3 cut(s) 178, 1401, 2059
LguI GCTCTTC 2 cut(s) 561, 844
LmnI GCTCC 6 cut(s) 631, 661, 1452, 1537, 1660, 2149
Lsp1109I GCAGC 5 cut(s) 132, 1099, 1121, 1168, 1527
LweI GCATC 5 cut(s) 319, 1048, 1108, 1904, 2015
MaeI CTAG 4 cut(s) 908, 1329, 1371, 1562
MaeIII GTNAC 5 cut(s) 231, 299, 983, 2107, 2113
MalI GATC 3 cut(s) 180, 1403, 2061
MboI GATC 3 cut(s) 178, 1401, 2059
MflI RGATCY 2 cut(s) 1401, 2059
MhlI GDGCHC 1 cut(s) 247
MlyI GAGTC 3 cut(s) 283, 518, 1975
Mph1103I ATGCAT 1 cut(s) 1897
MroXI GAANNNNTTC 2 cut(s) 261, 750
MseI TTAA 9 cut(s) 666, 687, 783, 875, 938, 1361, 1520, 1646, 1677
MspA1I CMGCKG 4 cut(s) 431, 463, 1112, 1625
MspCI CTTAAG 1 cut(s) 1676
MspR9I CCNGG 2 cut(s) 1415, 1751
Mva1269I GAATGC 1 cut(s) 1897
MvaI CCWGG 2 cut(s) 1415, 1751
MwoI GCNNNNNNNGC 5 cut(s) 183, 1118, 1571, 1631, 2102
NdeII GATC 3 cut(s) 178, 1401, 2059
NlaIII CATG 5 cut(s) 917, 1295, 1643, 1921, 1945
NlaIV GGNNCC 3 cut(s) 1412, 1454, 2145
NmuCI GTSAC 1 cut(s) 2107
NsiI ATGCAT 1 cut(s) 1897
PagI TCATGA 2 cut(s) 1639, 1941
PciSI GCTCTTC 2 cut(s) 561, 844
PcsI WCGNNNNNNNCGW 1 cut(s) 168
PctI GAATGC 1 cut(s) 1897
PdmI GAANNNNTTC 2 cut(s) 261, 750
PfeI GAWTC 7 cut(s) 446, 958, 1040, 1190, 1439, 1579, 2153
PkrI GCNGC 7 cut(s) 122, 430, 1111, 1114, 1158, 1542, 2031
PleI GAGTC 3 cut(s) 283, 517, 1974
PpsI GAGTC 3 cut(s) 283, 517, 1974
PshBI ATTAAT 1 cut(s) 783
Psp6I CCWGG 2 cut(s) 1413, 1749
PspGI CCWGG 2 cut(s) 1413, 1749
PspN4I GGNNCC 3 cut(s) 1412, 1454, 2145
PspPI GGNCC 3 cut(s) 18, 1411, 1906
PstI CTGCAG 3 cut(s) 1449, 1545, 1596
PstNI CAGNNNCTG 2 cut(s) 923, 1696
PsuI RGATCY 2 cut(s) 1401, 2059
PvuII CAGCTG 3 cut(s) 463, 1112, 1625
RsaI GTAC 4 cut(s) 318, 610, 1384, 1800
RsaNI GTAC 4 cut(s) 317, 609, 1383, 1799
SapI GCTCTTC 2 cut(s) 561, 844
SaqAI TTAA 9 cut(s) 666, 687, 783, 875, 938, 1361, 1520, 1646, 1677
SatI GCNGC 7 cut(s) 121, 429, 1110, 1113, 1157, 1541, 2030
Sau3AI GATC 3 cut(s) 178, 1401, 2059
Sau96I GGNCC 3 cut(s) 18, 1411, 1906
ScaI AGTACT 2 cut(s) 610, 1800
SchI GAGTC 3 cut(s) 283, 518, 1975
ScrFI CCNGG 2 cut(s) 1415, 1751
SduI GDGCHC 1 cut(s) 247
SfaNI GCATC 5 cut(s) 319, 1048, 1108, 1904, 2015
SfcI CTRYAG 3 cut(s) 1445, 1541, 1592
SinI GGWCC 2 cut(s) 18, 1411
SmlI CTYRAG 4 cut(s) 97, 1243, 1676, 1739
SmoI CTYRAG 4 cut(s) 97, 1243, 1676, 1739
SsiI CCGC 5 cut(s) 16, 190, 429, 1115, 2029
SspI AATATT 1 cut(s) 2025
SspMI CTAG 4 cut(s) 908, 1329, 1371, 1562
StyD4I CCNGG 2 cut(s) 1413, 1749
StyI CCWWGG 3 cut(s) 492, 2013, 2091
TaaI ACNGT 8 cut(s) 136, 220, 299, 991, 1012, 1274, 1368, 2113
TaqI TCGA 2 cut(s) 762, 945
TatI WGTACW 2 cut(s) 608, 1798
TauI GCSGC 2 cut(s) 431, 2032
TfiI GAWTC 7 cut(s) 446, 958, 1040, 1190, 1439, 1579, 2153
Tru1I TTAA 9 cut(s) 666, 687, 783, 875, 938, 1361, 1520, 1646, 1677
Tru9I TTAA 9 cut(s) 666, 687, 783, 875, 938, 1361, 1520, 1646, 1677
TscAI CASTG 5 cut(s) 223, 994, 1279, 1449, 2116
TseFI GTSAC 1 cut(s) 2107
TseI GCWGC 5 cut(s) 120, 1109, 1112, 1156, 1540
Tsp45I GTSAC 1 cut(s) 2107
TspDTI ATGAA 9 cut(s) 467, 540, 918, 1011, 1170, 1308, 1350, 1796, 1958
TspGWI ACGGA 1 cut(s) 553
TspRI CASTG 5 cut(s) 223, 994, 1279, 1449, 2116
Vha464I CTTAAG 1 cut(s) 1676
VpaK11BI GGWCC 2 cut(s) 18, 1411
VspI ATTAAT 1 cut(s) 783
XagI CCTNNNNNAGG 3 cut(s) 701, 1460, 1754
XapI RAATTY 5 cut(s) 595, 1003, 1175, 1375, 1707
XbaI TCTAGA 2 cut(s) 1328, 1370
XmnI GAANNNNTTC 2 cut(s) 261, 750
XspI CTAG 4 cut(s) 908, 1329, 1371, 1562
ZrmI AGTACT 2 cut(s) 610, 1800
Zsp2I ATGCAT 1 cut(s) 1897
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.