Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0003650

Physical Location & Seq

Genomic Coordinates Reverse (-)

20877914 .. 20882925

Gene Structure 5012 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1212900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGTCTACTAGACTCCCTAAAGAAATCTCACCAAATCACGTTTTGTCTCTCCTGAATGGCATTGGTATTTTTAGTTATGGTGTCCTTGGTGCGCTCTATGCATTGACTCGGTCAGAAAAGAAAGTCACTGATGCCATAGTCGAATCTATGAAGACCAAGCTGAAAGAAAAGGAAGCTTCTATTGTTTCATTGGGGAAGAGCTATGAATCTCAGTTACTAGGTGAACAAGAAGAATGGAGCAAGCAACTTGCAAAGGCAAAGGAAGAGCAAAATTCTTTAACAAGCGAACTGAGTTTGGCAAAAAGTACAATTGCAAGCTTAGGAAAGGAGTTAAATGGTGAAAAGAAATTGATTGAGGAGCTTAAAATTCAAATTGACAGTATTAAAACCAACCTTTCAAAGGCCGGAGAAGAAAAGGTAGTACTTGAAGAGAATTTGAAGGAAAAGCAAAACTCAATTGAAGTCCTACAGGGGATGATTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0009295 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0016363 GO:0031974 GO:0031976 GO:0031981 GO:0031984 GO:0034357 GO:0034399 GO:0042646 GO:0042651 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0070013 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

162

Amino Acids

17.78

Weight (kDa)

5.67

Isoelectric Point (pI)

38.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003650)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16000
fragaria_vesca	FvH4_6g31081 FvH4_6g31081 FvH4_6g31081 FvH4_6g31081 FvH4_6g31081 FvH4_6g31081 FvH4_6g31081 FvH4_6g31081 FvH4_6g31081
malus_domestica	MD09G1212900.v1.1 MD09G1213300.v1.1 MD09G1213400.v1.1 MD09G1213500.v1.1 MD09G1213800.v1.1 MD17G1195700.v1.1
prunus_persica	Prupe.3G071700_v2.0.a1
pyrus_communis	pycom09g13050 pycom17g20130 pycom17g20140
rosa_chinensis	RchiOBHm_Chr2g0137781
rosa_laevigata	RLG00000019675
rosa_multiflora	Rmu_sc0008635.1_g000002
rosa_roxburghii	Rroxscaffold_2G00106850
rosa_rugosa	Rorug02G0345400 Rorug02G0345500 Rorug02G0345600 Rorug02G0345600 Rorug02G0345700 Rorug02G0345700
rosa_samantha	Rh2AG392700 Rh2BG400400 Rh2CG379400 Rh2DG415300
rosa_wichuraiana	Rw2G032170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	5
AcsI	RAATTY	3 cut(s)	271, 366, 433
AfaI	GTAC	2 cut(s)	307, 423
AfiI	CCNNNNNNNGG	1 cut(s)	400
AgsI	TTSAA	5 cut(s)	371, 399, 428, 439, 461
AluBI	AGCT	5 cut(s)	160, 176, 201, 318, 361
AluI	AGCT	5 cut(s)	160, 176, 201, 318, 361
Alw26I	GTCTC	1 cut(s)	51
AoxI	GGCC	1 cut(s)	402
ApoI	RAATTY	3 cut(s)	271, 366, 433
AspLEI	GCGC	1 cut(s)	94
AsuHPI	GGTGA	3 cut(s)	21, 233, 350
BbsI	GAAGAC	1 cut(s)	158
BcoDI	GTCTC	1 cut(s)	51
BfaI	CTAG	2 cut(s)	9, 218
BfmI	CTRYAG	1 cut(s)	467
BmcAI	AGTACT	1 cut(s)	423
BmsI	GCATC	1 cut(s)	121
BpiI	GAAGAC	1 cut(s)	158
Bpu10I	CCTNAGC	1 cut(s)	319
BsaJI	CCNNGG	1 cut(s)	85
Bsc4I	CCNNNNNNNGG	1 cut(s)	400
BseDI	CCNNGG	1 cut(s)	85
BseGI	GGATG	1 cut(s)	480
BseLI	CCNNNNNNNGG	1 cut(s)	400
BseMII	CTCAG	2 cut(s)	224, 281
BseRI	GAGGAG	1 cut(s)	371
BshFI	GGCC	1 cut(s)	404
BsiSI	CCGG	1 cut(s)	405
BslI	CCNNNNNNNGG	1 cut(s)	400
BsmAI	GTCTC	1 cut(s)	51
BsnI	GGCC	1 cut(s)	404
BspANI	GGCC	1 cut(s)	404
BspCNI	CTCAG	2 cut(s)	223, 282
BspQI	GCTCTTC	2 cut(s)	191, 258
BssECI	CCNNGG	1 cut(s)	85
BssT1I	CCWWGG	1 cut(s)	85
Bst4CI	ACNGT	1 cut(s)	380
Bst6I	CTCTTC	3 cut(s)	191, 258, 423
BstC8I	GCNNGC	2 cut(s)	242, 316
BstDEI	CTNAG	3 cut(s)	210, 290, 319
BstENI	CCTNNNNNAGG	1 cut(s)	398
BstF5I	GGATG	1 cut(s)	480
BstHHI	GCGC	1 cut(s)	94
BstMAI	GTCTC	1 cut(s)	51
BstMWI	GCNNNNNNNGC	1 cut(s)	98
BstSFI	CTRYAG	1 cut(s)	467
BstV2I	GAAGAC	1 cut(s)	158
BsuRI	GGCC	1 cut(s)	404
BtsCI	GGATG	1 cut(s)	480
BtsIMutI	CAGTG	1 cut(s)	126
Cac8I	GCNNGC	2 cut(s)	242, 316
CfoI	GCGC	1 cut(s)	94
Csp6I	GTAC	2 cut(s)	306, 422
CviJI	RGCY	6 cut(s)	160, 176, 201, 318, 361, 404
CviKI_1	RGCY	6 cut(s)	160, 176, 201, 318, 361, 404
CviQI	GTAC	2 cut(s)	306, 422
DdeI	CTNAG	3 cut(s)	210, 290, 319
Eam1104I	CTCTTC	3 cut(s)	191, 258, 423
EarI	CTCTTC	3 cut(s)	191, 258, 423
Eco130I	CCWWGG	1 cut(s)	85
EcoNI	CCTNNNNNAGG	1 cut(s)	398
EcoT14I	CCWWGG	1 cut(s)	85
EcoT22I	ATGCAT	1 cut(s)	103
ErhI	CCWWGG	1 cut(s)	85
FaiI	YATR	5 cut(s)	78, 99, 137, 149, 204
FblI	GTMKAC	1 cut(s)	5
FspBI	CTAG	2 cut(s)	9, 218
GlaI	GCGC	1 cut(s)	93
HaeIII	GGCC	1 cut(s)	404
HapII	CCGG	1 cut(s)	405
HhaI	GCGC	1 cut(s)	94
Hin6I	GCGC	1 cut(s)	92
HinP1I	GCGC	1 cut(s)	92
HindIII	AAGCTT	2 cut(s)	174, 316
HinfI	GANTC	4 cut(s)	12, 106, 143, 206
HpaII	CCGG	1 cut(s)	405
HphI	GGTGA	3 cut(s)	21, 233, 350
Hpy166II	GTNNAC	2 cut(s)	6, 224
Hpy188I	TCNGA	1 cut(s)	115
Hpy188III	TCNNGA	1 cut(s)	52
Hpy8I	GTNNAC	2 cut(s)	6, 224
HpyAV	CCTTC	1 cut(s)	433
HpyCH4III	ACNGT	1 cut(s)	380
HpyCH4IV	ACGT	1 cut(s)	39
HpyCH4V	TGCA	3 cut(s)	101, 251, 314
HpyF10VI	GCNNNNNNNGC	1 cut(s)	98
HpyF3I	CTNAG	3 cut(s)	210, 290, 319
HpySE526I	ACGT	1 cut(s)	39
HspAI	GCGC	1 cut(s)	92
LguI	GCTCTTC	2 cut(s)	191, 258
LmnI	GCTCC	2 cut(s)	237, 358
LpnPI	CCDG	3 cut(s)	65, 418, 455
LweI	GCATC	1 cut(s)	121
MaeI	CTAG	2 cut(s)	9, 218
MaeII	ACGT	1 cut(s)	39
MaeIII	GTNAC	2 cut(s)	124, 213
MboII	GAAGA	6 cut(s)	163, 208, 242, 275, 422, 440
MfeI	CAATTG	2 cut(s)	309, 456
MluCI	AATT	7 cut(s)	271, 309, 347, 366, 372, 433, 456
MlyI	GAGTC	2 cut(s)	6, 100
MnlI	CCTC	1 cut(s)	349
Mph1103I	ATGCAT	1 cut(s)	103
MseI	TTAA	4 cut(s)	278, 332, 363, 384
MspI	CCGG	1 cut(s)	405
MunI	CAATTG	2 cut(s)	309, 456
MwoI	GCNNNNNNNGC	1 cut(s)	98
NmuCI	GTSAC	1 cut(s)	124
NsiI	ATGCAT	1 cut(s)	103
PciSI	GCTCTTC	2 cut(s)	191, 258
PfeI	GAWTC	2 cut(s)	143, 206
PflFI	GACNNNGTC	1 cut(s)	109
PleI	GAGTC	2 cut(s)	6, 100
PpsI	GAGTC	2 cut(s)	6, 100
PsyI	GACNNNGTC	1 cut(s)	109
RsaI	GTAC	2 cut(s)	307, 423
RsaNI	GTAC	2 cut(s)	306, 422
SapI	GCTCTTC	2 cut(s)	191, 258
SaqAI	TTAA	4 cut(s)	278, 332, 363, 384
ScaI	AGTACT	1 cut(s)	423
SchI	GAGTC	2 cut(s)	6, 100
SetI	ASST	9 cut(s)	42, 162, 178, 203, 223, 320, 363, 396, 420
SfaNI	GCATC	1 cut(s)	121
SfcI	CTRYAG	1 cut(s)	467
Sse9I	AATT	7 cut(s)	271, 309, 347, 366, 372, 433, 456
SspMI	CTAG	2 cut(s)	9, 218
StyI	CCWWGG	1 cut(s)	85
TaaI	ACNGT	1 cut(s)	380
TaiI	ACGT	1 cut(s)	42
TaqI	TCGA	1 cut(s)	141
TaqII	GACCGA	1 cut(s)	99
TasI	AATT	7 cut(s)	271, 309, 347, 366, 372, 433, 456
TatI	WGTACW	2 cut(s)	305, 421
TfiI	GAWTC	2 cut(s)	143, 206
Tru1I	TTAA	4 cut(s)	278, 332, 363, 384
Tru9I	TTAA	4 cut(s)	278, 332, 363, 384
TscAI	CASTG	1 cut(s)	133
TseFI	GTSAC	1 cut(s)	124
Tsp45I	GTSAC	1 cut(s)	124
TspDTI	ATGAA	3 cut(s)	164, 177, 219
TspRI	CASTG	1 cut(s)	133
Tth111I	GACNNNGTC	1 cut(s)	109
XagI	CCTNNNNNAGG	1 cut(s)	398
XapI	RAATTY	3 cut(s)	271, 366, 433
XmiI	GTMKAC	1 cut(s)	5
XspI	CTAG	2 cut(s)	9, 218
ZrmI	AGTACT	1 cut(s)	423
Zsp2I	ATGCAT	1 cut(s)	103

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.