Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0003650

Physical Location & Seq

Genomic Coordinates Reverse (-)

20942280 .. 20942660

Gene Structure 381 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1213400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGGAAAATCAATTAAAACAGTCAAAAACTTTATACACGGAACTTGAAGCTGAGATCTCGGTTCGGGCCAAGTTTACTGGAGTTAGGGAATCACTGCAGATAACCCTTGATAAGGCTACGTTAAGTGGTGATGCGGTTGTTGGTGAGCTTTTTACAGCGAAAGAACTTATAAAGAAGACAAATGAGGAGCTACAAGTTCTGTCCCATGAACTAATAGTTGTTGCAAAAAAACGTGACAGCTTGCATGAGGAATTGGCTGATGTCTACAAAAAAGTTGAAAGAGCTTTAAGTGATTTAAAAGAAGAAAATGAAATAGTTTCTTCTTTGAAAAAAGAAGTTAAAGCTTTGGATAAACAGATTTTGAAGGACAATGAGTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0009295 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0016363 GO:0031974 GO:0031976 GO:0031981 GO:0031984 GO:0034357 GO:0034399 GO:0042646 GO:0042651 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0070013 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

127

Amino Acids

14.27

Weight (kDa)

5.34

Isoelectric Point (pI)

31.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003650)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16000
fragaria_vesca	FvH4_6g31081 FvH4_6g31081 FvH4_6g31081 FvH4_6g31081 FvH4_6g31081 FvH4_6g31081 FvH4_6g31081 FvH4_6g31081 FvH4_6g31081
malus_domestica	MD09G1212900.v1.1 MD09G1213300.v1.1 MD09G1213400.v1.1 MD09G1213500.v1.1 MD09G1213800.v1.1 MD17G1195700.v1.1
prunus_persica	Prupe.3G071700_v2.0.a1
pyrus_communis	pycom09g13050 pycom17g20130 pycom17g20140
rosa_chinensis	RchiOBHm_Chr2g0137781
rosa_laevigata	RLG00000019675
rosa_multiflora	Rmu_sc0008635.1_g000002
rosa_roxburghii	Rroxscaffold_2G00106850
rosa_rugosa	Rorug02G0345400 Rorug02G0345500 Rorug02G0345600 Rorug02G0345600 Rorug02G0345700 Rorug02G0345700
rosa_samantha	Rh2AG392700 Rh2BG400400 Rh2CG379400 Rh2DG415300
rosa_wichuraiana	Rw2G032170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	170
AccI	GTMKAC	1 cut(s)	264
AciI	CCGC	1 cut(s)	134
AfiI	CCNNNNNNNGG	1 cut(s)	112
AgsI	TTSAA	4 cut(s)	47, 278, 328, 364
AhdI	GACNNNNNGTC	1 cut(s)	373
AluBI	AGCT	6 cut(s)	50, 148, 190, 240, 284, 344
AluI	AGCT	6 cut(s)	50, 148, 190, 240, 284, 344
AoxI	GGCC	1 cut(s)	66
AspS9I	GGNCC	1 cut(s)	66
AsuHPI	GGTGA	2 cut(s)	140, 155
BbsI	GAAGAC	1 cut(s)	182
BfmI	CTRYAG	1 cut(s)	95
BglII	AGATCT	1 cut(s)	54
BmeRI	GACNNNNNGTC	1 cut(s)	373
BmgT120I	GGNCC	1 cut(s)	66
BmsI	GCATC	1 cut(s)	121
BpiI	GAAGAC	1 cut(s)	182
BpmI	CTGGAG	1 cut(s)	99
Bsc4I	CCNNNNNNNGG	1 cut(s)	112
Bse1I	ACTGG	1 cut(s)	82
BseLI	CCNNNNNNNGG	1 cut(s)	112
BseMII	CTCAG	1 cut(s)	42
BseNI	ACTGG	1 cut(s)	82
BseRI	GAGGAG	1 cut(s)	200
BshFI	GGCC	1 cut(s)	68
BslFI	GGGAC	1 cut(s)	187
BslI	CCNNNNNNNGG	1 cut(s)	112
BsmFI	GGGAC	1 cut(s)	187
BsnI	GGCC	1 cut(s)	68
Bsp143I	GATC	1 cut(s)	54
BspACI	CCGC	1 cut(s)	134
BspANI	GGCC	1 cut(s)	68
BspCNI	CTCAG	1 cut(s)	43
BspMAI	CTGCAG	1 cut(s)	99
BsrI	ACTGG	1 cut(s)	82
BssMI	GATC	1 cut(s)	54
Bst4CI	ACNGT	1 cut(s)	21
BstC8I	GCNNGC	1 cut(s)	242
BstDEI	CTNAG	2 cut(s)	51, 378
BstENI	CCTNNNNNAGG	1 cut(s)	110
BstKTI	GATC	1 cut(s)	57
BstMBI	GATC	1 cut(s)	54
BstSFI	CTRYAG	1 cut(s)	95
BstV2I	GAAGAC	1 cut(s)	182
BstX2I	RGATCY	1 cut(s)	54
BstYI	RGATCY	1 cut(s)	54
BsuRI	GGCC	1 cut(s)	68
BtsI	GCAGTG	1 cut(s)	92
BtsIMutI	CAGTG	1 cut(s)	92
Cac8I	GCNNGC	1 cut(s)	242
Cfr13I	GGNCC	1 cut(s)	66
CviAII	CATG	2 cut(s)	206, 245
CviJI	RGCY	9 cut(s)	50, 68, 116, 148, 190, 240, 257, 284, 344
CviKI_1	RGCY	9 cut(s)	50, 68, 116, 148, 190, 240, 257, 284, 344
DdeI	CTNAG	2 cut(s)	51, 378
DpnI	GATC	1 cut(s)	56
DpnII	GATC	1 cut(s)	54
DraI	TTTAAA	1 cut(s)	297
DriI	GACNNNNNGTC	1 cut(s)	373
Eam1105I	GACNNNNNGTC	1 cut(s)	373
EcoNI	CCTNNNNNAGG	1 cut(s)	110
FaeI	CATG	2 cut(s)	209, 248
FaiI	YATR	4 cut(s)	34, 170, 207, 246
FaqI	GGGAC	1 cut(s)	187
FatI	CATG	2 cut(s)	205, 244
FblI	GTMKAC	1 cut(s)	264
GsuI	CTGGAG	1 cut(s)	99
HaeIII	GGCC	1 cut(s)	68
Hin1II	CATG	2 cut(s)	209, 248
HindIII	AAGCTT	1 cut(s)	342
HinfI	GANTC	2 cut(s)	89, 374
HphI	GGTGA	2 cut(s)	140, 155
Hpy166II	GTNNAC	2 cut(s)	75, 265
Hpy8I	GTNNAC	2 cut(s)	75, 265
HpyAV	CCTTC	1 cut(s)	358
HpyCH4III	ACNGT	1 cut(s)	21
HpyCH4IV	ACGT	2 cut(s)	119, 232
HpyCH4V	TGCA	3 cut(s)	97, 224, 244
HpyF3I	CTNAG	2 cut(s)	51, 378
HpySE526I	ACGT	2 cut(s)	119, 232
Hsp92II	CATG	2 cut(s)	209, 248
Kzo9I	GATC	1 cut(s)	54
LmnI	GCTCC	1 cut(s)	187
LpnPI	CCDG	1 cut(s)	63
LweI	GCATC	1 cut(s)	121
MaeII	ACGT	2 cut(s)	119, 232
MaeIII	GTNAC	1 cut(s)	233
MalI	GATC	1 cut(s)	56
MboI	GATC	1 cut(s)	54
MboII	GAAGA	3 cut(s)	187, 312, 314
MflI	RGATCY	1 cut(s)	54
MluCI	AATT	2 cut(s)	11, 251
MnlI	CCTC	2 cut(s)	178, 241
MseI	TTAA	5 cut(s)	14, 122, 287, 296, 339
NdeII	GATC	1 cut(s)	54
NlaIII	CATG	2 cut(s)	209, 248
NmuCI	GTSAC	1 cut(s)	233
PfeI	GAWTC	1 cut(s)	89
PsiI	TTATAA	1 cut(s)	170
PspPI	GGNCC	1 cut(s)	66
PstI	CTGCAG	1 cut(s)	99
PsuI	RGATCY	1 cut(s)	54
SaqAI	TTAA	5 cut(s)	14, 122, 287, 296, 339
Sau3AI	GATC	1 cut(s)	54
Sau96I	GGNCC	1 cut(s)	66
SetI	ASST	8 cut(s)	52, 122, 150, 192, 235, 242, 286, 346
SfaNI	GCATC	1 cut(s)	121
SfcI	CTRYAG	1 cut(s)	95
Sse9I	AATT	2 cut(s)	11, 251
SsiI	CCGC	1 cut(s)	134
TaaI	ACNGT	1 cut(s)	21
TaiI	ACGT	2 cut(s)	122, 235
TasI	AATT	2 cut(s)	11, 251
TfiI	GAWTC	1 cut(s)	89
Tru1I	TTAA	5 cut(s)	14, 122, 287, 296, 339
Tru9I	TTAA	5 cut(s)	14, 122, 287, 296, 339
TscAI	CASTG	1 cut(s)	99
TseFI	GTSAC	1 cut(s)	233
Tsp45I	GTSAC	1 cut(s)	233
TspDTI	ATGAA	2 cut(s)	222, 324
TspGWI	ACGGA	1 cut(s)	53
TspRI	CASTG	1 cut(s)	99
XagI	CCTNNNNNAGG	1 cut(s)	110
XmiI	GTMKAC	1 cut(s)	264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.