Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0003650

Physical Location & Seq

Genomic Coordinates Reverse (-)

20942778 .. 20944337

Gene Structure 1560 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1213500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGGACTGGTGTTACTATAAATTATTATCTTTTGTAACAAGTTTCCATCTCATTTCATGCGGTTTATGCATTAGTTCCTTTATTTCCTTTTTTTTGTCAGAAGAAAGTGAGCTAAAGACACCAGAGGGGAGTAAAAACACAGAGGAAGCACCTCAAACAAATGTAGCACCAAATCCCGTTTTGTCTCTCCTGAATGGTATTGGTATTTTCAGTTTTGGTGTCCTTGGTGTGCTGTACGCATTGATTCGGTCAGAAAAGAAAGCCACTGATGCCATAGTCGAATTTATGAAGACCAAGCTGAAAGAAAAGGAAGCTGTTATTGTTTCATTAGGGAAGAGCTATGAATCTAATTTACTAGGTGAACAGGAAGAACGGAGCAAGCAACTAGCAAAGGCAAAGGACGAGCAAAATTCTTTAACAAGCCAATTGAATTTGCTTAAAACTCAAATTGACAGTTTTAAAACCAACCTTTCAAAGGCCGGAGAAGAAAAGGTAGTACTTGAAGAGAATTTGAAGGAAAAGCAAAACTCAATTGAAGTCCTACAGGGAATGATTGATTTGCTCAATTCAGAAATCAAGGATAAAGAAACCAATGTCCGAAGTCTTAGTTCTTCTCTTGCCGAAAAAGATTTGGAGTTGAGGGACTTGAAAGCTACCTACAATCAAATGAGGGATGAACTAACGAATGCACTTTCAGATAGTCAAATGTTGAAAGATGAACTCTTGAAAAATCAAAAGGAATTAGAATTGAAGAATTCCTATCTCGATGAATTGAATGCAACAGTTAGTTCTTTCACTTCTGAATTAGATGATTCGAAGAGGGAGTTTGATCAGGAAGAATACAATAATCTGAAAACATCCTCCTGTAGAAAGGCGGATTTGGATGCTAAGCTTTTGGAAGAAAGGGAAGAGAAATTTCAGCAGCTAAAGGAAAAGCTTGAACTTGCTCTGAGTGACACAAGTAGAAACAAAGAATTAAATTCTGATTTGACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0009295 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0016363 GO:0031974 GO:0031976 GO:0031981 GO:0031984 GO:0034357 GO:0034399 GO:0042646 GO:0042651 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0070013 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

332

Amino Acids

37.53

Weight (kDa)

4.82

Isoelectric Point (pI)

37.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Image

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Publication-ready

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Orthologous Genes (Group: OG0003650)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16000
fragaria_vesca	FvH4_6g31081 FvH4_6g31081 FvH4_6g31081 FvH4_6g31081 FvH4_6g31081 FvH4_6g31081 FvH4_6g31081 FvH4_6g31081 FvH4_6g31081
malus_domestica	MD09G1212900.v1.1 MD09G1213300.v1.1 MD09G1213400.v1.1 MD09G1213500.v1.1 MD09G1213800.v1.1 MD17G1195700.v1.1
prunus_persica	Prupe.3G071700_v2.0.a1
pyrus_communis	pycom09g13050 pycom17g20130 pycom17g20140
rosa_chinensis	RchiOBHm_Chr2g0137781
rosa_laevigata	RLG00000019675
rosa_multiflora	Rmu_sc0008635.1_g000002
rosa_roxburghii	Rroxscaffold_2G00106850
rosa_rugosa	Rorug02G0345400 Rorug02G0345500 Rorug02G0345600 Rorug02G0345600 Rorug02G0345700 Rorug02G0345700
rosa_samantha	Rh2AG392700 Rh2BG400400 Rh2CG379400 Rh2DG415300
rosa_wichuraiana	Rw2G032170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	60, 875
AcsI	RAATTY	7 cut(s)	281, 409, 430, 508, 754, 914, 979
AfaI	GTAC	2 cut(s)	236, 498
AfiI	CCNNNNNNNGG	1 cut(s)	475
AluBI	AGCT	8 cut(s)	112, 298, 314, 339, 653, 892, 925, 937
AluI	AGCT	8 cut(s)	112, 298, 314, 339, 653, 892, 925, 937
Alw26I	GTCTC	1 cut(s)	189
AoxI	GGCC	1 cut(s)	477
ApeKI	GCWGC	1 cut(s)	922
ApoI	RAATTY	7 cut(s)	281, 409, 430, 508, 754, 914, 979
AsuHPI	GGTGA	1 cut(s)	371
AsuII	TTCGAA	1 cut(s)	815
BbsI	GAAGAC	1 cut(s)	296
BbvI	GCAGC	1 cut(s)	934
BccI	CCATC	1 cut(s)	54
BclI	TGATCA	1 cut(s)	829
BcoDI	GTCTC	1 cut(s)	189
BfaI	CTAG	2 cut(s)	356, 386
BfmI	CTRYAG	2 cut(s)	542, 865
BisI	GCNGC	1 cut(s)	923
BlpI	GCTNAGC	1 cut(s)	888
BlsI	GCNGC	1 cut(s)	924
BmcAI	AGTACT	1 cut(s)	498
BmsI	GCATC	2 cut(s)	259, 874
BpiI	GAAGAC	1 cut(s)	296
Bpu1102I	GCTNAGC	1 cut(s)	888
Bpu14I	TTCGAA	1 cut(s)	815
BsaJI	CCNNGG	1 cut(s)	223
Bsc4I	CCNNNNNNNGG	1 cut(s)	475
Bse1I	ACTGG	1 cut(s)	11
BseDI	CCNNGG	1 cut(s)	223
BseGI	GGATG	3 cut(s)	679, 857, 889
BseLI	CCNNNNNNNGG	1 cut(s)	475
BseMII	CTCAG	1 cut(s)	941
BseNI	ACTGG	1 cut(s)	11
BseXI	GCAGC	1 cut(s)	934
BshFI	GGCC	1 cut(s)	479
BsiSI	CCGG	1 cut(s)	480
BslFI	GGGAC	1 cut(s)	656
BslI	CCNNNNNNNGG	1 cut(s)	475
BsmAI	GTCTC	1 cut(s)	189
BsmFI	GGGAC	1 cut(s)	656
BsmI	GAATGC	2 cut(s)	691, 781
BsnI	GGCC	1 cut(s)	479
Bsp119I	TTCGAA	1 cut(s)	815
Bsp143I	GATC	1 cut(s)	829
Bsp1720I	GCTNAGC	1 cut(s)	888
BspACI	CCGC	2 cut(s)	60, 875
BspANI	GGCC	1 cut(s)	479
BspCNI	CTCAG	1 cut(s)	942
BspQI	GCTCTTC	1 cut(s)	329
BspT104I	TTCGAA	1 cut(s)	815
BsrI	ACTGG	1 cut(s)	11
BssECI	CCNNGG	1 cut(s)	223
BssMI	GATC	1 cut(s)	829
BssT1I	CCWWGG	1 cut(s)	223
Bst4CI	ACNGT	2 cut(s)	455, 784
Bst6I	CTCTTC	4 cut(s)	329, 498, 812, 903
BstBI	TTCGAA	1 cut(s)	815
BstC8I	GCNNGC	1 cut(s)	380
BstDEI	CTNAG	3 cut(s)	605, 888, 950
BstENI	CCTNNNNNAGG	1 cut(s)	473
BstF5I	GGATG	3 cut(s)	679, 857, 889
BstKTI	GATC	1 cut(s)	832
BstMAI	GTCTC	1 cut(s)	189
BstMBI	GATC	1 cut(s)	829
BstMWI	GCNNNNNNNGC	2 cut(s)	66, 269
BstSFI	CTRYAG	2 cut(s)	542, 865
BstV1I	GCAGC	1 cut(s)	934
BstV2I	GAAGAC	1 cut(s)	296
BsuRI	GGCC	1 cut(s)	479
BtsCI	GGATG	3 cut(s)	679, 857, 889
BtsIMutI	CAGTG	1 cut(s)	264
Cac8I	GCNNGC	1 cut(s)	380
Csp6I	GTAC	2 cut(s)	235, 497
CviAII	CATG	1 cut(s)	57
CviQI	GTAC	2 cut(s)	235, 497
DdeI	CTNAG	3 cut(s)	605, 888, 950
DpnI	GATC	1 cut(s)	831
DpnII	GATC	1 cut(s)	829
DraI	TTTAAA	1 cut(s)	460
Eam1104I	CTCTTC	4 cut(s)	329, 498, 812, 903
EarI	CTCTTC	4 cut(s)	329, 498, 812, 903
EciI	GGCGGA	1 cut(s)	890
Eco130I	CCWWGG	1 cut(s)	223
EcoNI	CCTNNNNNAGG	1 cut(s)	473
EcoRI	GAATTC	1 cut(s)	754
EcoT14I	CCWWGG	1 cut(s)	223
EcoT22I	ATGCAT	1 cut(s)	71
ErhI	CCWWGG	1 cut(s)	223
FaeI	CATG	1 cut(s)	60
FaiI	YATR	6 cut(s)	18, 58, 67, 275, 287, 342
FaqI	GGGAC	1 cut(s)	656
FatI	CATG	1 cut(s)	56
FbaI	TGATCA	1 cut(s)	829
Fnu4HI	GCNGC	1 cut(s)	923
FokI	GGATG	3 cut(s)	686, 844, 896
Fsp4HI	GCNGC	1 cut(s)	923
FspBI	CTAG	2 cut(s)	356, 386
GluI	GCNGC	1 cut(s)	923
HaeIII	GGCC	1 cut(s)	479
HapII	CCGG	1 cut(s)	480
Hin1II	CATG	1 cut(s)	60
HindIII	AAGCTT	2 cut(s)	890, 935
HinfI	GANTC	3 cut(s)	244, 344, 812
HpaII	CCGG	1 cut(s)	480
HphI	GGTGA	1 cut(s)	371
Hpy166II	GTNNAC	1 cut(s)	362
Hpy188I	TCNGA	9 cut(s)	100, 253, 571, 599, 697, 802, 852, 951, 985
Hpy188III	TCNNGA	4 cut(s)	190, 724, 764, 833
Hpy8I	GTNNAC	1 cut(s)	362
HpyAV	CCTTC	1 cut(s)	508
HpyCH4III	ACNGT	2 cut(s)	455, 784
HpyCH4V	TGCA	3 cut(s)	69, 689, 779
HpyF10VI	GCNNNNNNNGC	2 cut(s)	66, 269
HpyF3I	CTNAG	3 cut(s)	605, 888, 950
Hsp92II	CATG	1 cut(s)	60
Ksp22I	TGATCA	1 cut(s)	829
Kzo9I	GATC	1 cut(s)	829
LguI	GCTCTTC	1 cut(s)	329
LmnI	GCTCC	1 cut(s)	375
LpnPI	CCDG	7 cut(s)	135, 203, 350, 493, 530, 818, 877
Lsp1109I	GCAGC	1 cut(s)	934
LweI	GCATC	2 cut(s)	259, 874
MaeI	CTAG	2 cut(s)	356, 386
MaeIII	GTNAC	3 cut(s)	11, 34, 953
MalI	GATC	1 cut(s)	831
MboI	GATC	1 cut(s)	829
MfeI	CAATTG	2 cut(s)	425, 531
MnlI	CCTC	7 cut(s)	118, 136, 162, 633, 663, 813, 871
Mph1103I	ATGCAT	1 cut(s)	71
MseI	TTAA	4 cut(s)	416, 438, 459, 977
MspI	CCGG	1 cut(s)	480
MunI	CAATTG	2 cut(s)	425, 531
Mva1269I	GAATGC	2 cut(s)	691, 781
MwoI	GCNNNNNNNGC	2 cut(s)	66, 269
NdeII	GATC	1 cut(s)	829
NlaIII	CATG	1 cut(s)	60
NmuCI	GTSAC	1 cut(s)	953
NsiI	ATGCAT	1 cut(s)	71
NspV	TTCGAA	1 cut(s)	815
PciSI	GCTCTTC	1 cut(s)	329
PctI	GAATGC	2 cut(s)	691, 781
PfeI	GAWTC	3 cut(s)	244, 344, 812
PkrI	GCNGC	1 cut(s)	924
RsaI	GTAC	2 cut(s)	236, 498
RsaNI	GTAC	2 cut(s)	235, 497
SapI	GCTCTTC	1 cut(s)	329
SaqAI	TTAA	4 cut(s)	416, 438, 459, 977
SatI	GCNGC	1 cut(s)	923
Sau3AI	GATC	1 cut(s)	829
ScaI	AGTACT	1 cut(s)	498
SfaNI	GCATC	2 cut(s)	259, 874
SfcI	CTRYAG	2 cut(s)	542, 865
SfuI	TTCGAA	1 cut(s)	815
SsiI	CCGC	2 cut(s)	60, 875
SspMI	CTAG	2 cut(s)	356, 386
StyI	CCWWGG	1 cut(s)	223
TaaI	ACNGT	2 cut(s)	455, 784
TaqI	TCGA	3 cut(s)	279, 765, 815
TaqII	GACCGA	1 cut(s)	237
TatI	WGTACW	1 cut(s)	496
TfiI	GAWTC	3 cut(s)	244, 344, 812
Tru1I	TTAA	4 cut(s)	416, 438, 459, 977
Tru9I	TTAA	4 cut(s)	416, 438, 459, 977
TscAI	CASTG	1 cut(s)	271
TseFI	GTSAC	1 cut(s)	953
TseI	GCWGC	1 cut(s)	922
Tsp45I	GTSAC	1 cut(s)	953
TspDTI	ATGAA	7 cut(s)	45, 302, 315, 357, 690, 732, 783
TspGWI	ACGGA	1 cut(s)	388
TspRI	CASTG	1 cut(s)	271
XagI	CCTNNNNNAGG	1 cut(s)	473
XapI	RAATTY	7 cut(s)	281, 409, 430, 508, 754, 914, 979
XspI	CTAG	2 cut(s)	356, 386
ZrmI	AGTACT	1 cut(s)	498
Zsp2I	ATGCAT	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.