Rh2BG400400

MAR-binding filament-like protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
Physical Location & Seq
Reverse (-)
56848106 .. 56852935
4830 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG400400.1

Sequence Viewer

Length: 1710 bp
ATGAAGAACCAGCTGAAAGAAAAGGAAGCTGCTATTGCTTCATTGGAGAAGAACTTTGAATCCAAGCTACTGGATGAACAGGAAGAAAGGAGCAAGCAACTTGGAAAGGCAAAGGAAGAGCAGAGGTCTCTAACAGACCAACTAAATTCAGCAAAGAGTACTATTGTGGACCTAGGGAAGGAGCTAAATAGTGAGAAGAAGTTGATTGAGGAGCTTAAAATTCAAAGTGAAAGCCTTAAAACAAACCTTTCAAAGGCTATCGAAGATAAGGTAGAGCTTGAAGAAAGTTTGAAGGCAAAGCTCCACTCGATCGAAGATTTGCAGGGAAGGATTAATTTACTCAATTCAGAACTGAAGGACAGAGAAAGTAATGTTCGAAGCCTTACCTCTTCTCTCGCAGAAAAGGATTTGGAGTTGAAGGACTTAAAAACTACCTACAAGCAGACTAGGGATGAACTAGCTCATGCAGTTTCAGATATTCAACAATTAAAAGTTGAACTCCTGAAGAATCAAAAGGAATTGGAATTGAAGAGTTCCACTGTGGATGAATTGAATTCAACAGTAAGTTCTTTGTCTTCTGAGAAAGGTGATTTTAAGAGGAAGCTTGATGCTATTCAGGAGGAATACAATAATCTGAAATCATCCTCTGGAAAAAAGGCAGCTTTGGATGCTAAGCTTTTGGGAGAAAAAGATGAGGCCCTTCAGCTGCTAAAGGAAAAACTTGAGCTTGCATTGACTGACTCAAGTAGAAGCAAACAGATAACTGCTGATTTGACCCGAGAGAAGGAAACCTTGAGGGAAATGTTGGATAATGCATTGAACAGTGAAGAGAGCTTGAAACATGAACTCCACATCACTCAGGAAGCTCTTGGAAAATCTAGAAATGAAGCTTCGAATCTGGAACATCAATTAAAACAGTCAAAAAATTTGTGTACAGAACTTGAAGCTGAGATCTCTCGGGTTCAGGCTGAGTTTACTGGAGTTAGGGAATCACTGCAGAGGAGCCTAGATGAGGCTACATCAAGTGGTGACGTGATTGCTACTGAGCTTGCTGCAGTGAAAGAACTTCTAAAGAAGACAGAAGAGGAGCTGCAAAGTGTGTCTCATCAACTAGCAGCTGTTGCAGAAAATCATGATAGCCTGCAGAATGAATTGGTTGATGTATATAAAACAGCTGACAAAGCTTCTAATGATTTAAAGGAAGAGAAGGAGCGAGTTTCTTCTCTTAAAAAAGAACTTCGAACTCTGGAGAAGCAAATCTCAGAGAACAAGAAGTCCCAGAAGTCTCTTGAGACAGACCTGGAAGAGGCTACAAAGTCACTTGATGAGATGAACCGAAATGCATTAATACTTTCCAAAGAGTTAGAGAAGGCTAATTCTCTAATTTCTAACCTTGAAGATGAGAAAGAGGTGTTTTACAAGTCCCTAAAAGAGCAAAAGACTGCATCCAAAGAGGCACGTGAAAATATGGAAGATGCCCATAATCTTGTCATGAAACTTGGCAAGGAAAGGGAGAGTCTGGAGAAGAGAGCAAAGAAAATGGAAGAGGAGTTGGCATCTGCCAAGGGTGAAATATTGCGGCTGAGGAGTAAAATAAAATCGTCTAAAGATCTTGTAAATAATGAGAAACCACAGAAAGTTGAGGCTGAAGGTGCTGTCACTGTTACTGCAAAGAGAGGTAGGAGGAGAAAGGCTGCTGAATCAGAGTGA

Protein Analysis

569

Amino Acids

64.3

Weight (kDa)

5.52

Isoelectric Point (pI)

46.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CCDC39 PF24161 377 - 550 6.2e-07 Coiled-coil domain-containing protein 39
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 1579
AcsI RAATTY 4 cut(s) 145, 219, 553, 925
AcuI CTGAAG 4 cut(s) 374, 524, 686, 1668
AcvI CACGTG 1 cut(s) 1460
AfaI GTAC 2 cut(s) 160, 934
AfiI CCNNNNNNNGG 5 cut(s) 178, 253, 784, 1012, 1306
AjiI CACGTC 1 cut(s) 1033
AjnI CCWGG 1 cut(s) 1299
AloI GAACNNNNNNTCC 4 cut(s) 44, 76, 1259, 1291
Alw26I GTCTC 4 cut(s) 132, 1107, 1286, 1290
Ama87I CYCGRG 2 cut(s) 777, 957
AoxI GGCC 1 cut(s) 696
ApeKI GCWGC 7 cut(s) 29, 659, 706, 1052, 1090, 1115, 1694
ApoI RAATTY 4 cut(s) 145, 219, 553, 925
AseI ATTAAT 2 cut(s) 333, 1346
AspA2I CCTAGG 1 cut(s) 172
AspS9I GGNCC 2 cut(s) 169, 697
AsuHPI GGTGA 3 cut(s) 599, 1040, 1580
AsuII TTCGAA 3 cut(s) 376, 893, 1240
AvaI CYCGRG 2 cut(s) 777, 957
AvaII GGWCC 1 cut(s) 169
AvrII CCTAGG 1 cut(s) 172
BbrPI CACGTG 1 cut(s) 1460
BbsI GAAGAC 2 cut(s) 567, 1082
BbvCI CCTCAGC 1 cut(s) 1583
BbvI GCAGC 7 cut(s) 16, 671, 693, 1039, 1077, 1127, 1681
BciT130I CCWGG 1 cut(s) 1301
BcoDI GTCTC 4 cut(s) 132, 1107, 1286, 1290
BfaI CTAG 6 cut(s) 173, 447, 458, 879, 1007, 1112
BfmI CTRYAG 3 cut(s) 995, 1053, 1142
BglII AGATCT 2 cut(s) 951, 1609
BisI GCNGC 8 cut(s) 30, 660, 707, 1053, 1091, 1116, 1580, 1695
BlnI CCTAGG 1 cut(s) 172
BlpI GCTNAGC 1 cut(s) 672
BlsI GCNGC 8 cut(s) 31, 661, 708, 1054, 1092, 1117, 1581, 1696
BmcAI AGTACT 1 cut(s) 160
Bme1390I CCNGG 1 cut(s) 1301
Bme18I GGWCC 1 cut(s) 169
BmeT110I CYCGRG 2 cut(s) 777, 957
BmgBI CACGTC 1 cut(s) 1033
BmgT120I GGNCC 2 cut(s) 169, 697
BmiI GGNNCC 1 cut(s) 1004
BmrFI CCNGG 1 cut(s) 1301
BmsI GCATC 5 cut(s) 598, 658, 1454, 1465, 1565
BpiI GAAGAC 2 cut(s) 567, 1082
BpmI CTGGAG 3 cut(s) 999, 1268, 1541
Bpu10I CCTNAGC 1 cut(s) 1583
Bpu1102I GCTNAGC 1 cut(s) 672
Bpu14I TTCGAA 3 cut(s) 376, 893, 1240
BpuEI CTTGAG 4 cut(s) 727, 743, 814, 1310
BsaAI YACGTR 1 cut(s) 1460
BsaI GGTCTC 1 cut(s) 132
BsaJI CCNNGG 2 cut(s) 172, 1563
BsaXI ACNNNNNCTCC 2 cut(s) 831, 861
Bsc4I CCNNNNNNNGG 5 cut(s) 178, 253, 784, 1012, 1306
Bse1I ACTGG 2 cut(s) 75, 982
BseBI CCWGG 1 cut(s) 1301
BseDI CCNNGG 2 cut(s) 172, 1563
BseGI GGATG 6 cut(s) 79, 457, 550, 641, 673, 1445
BseLI CCNNNNNNNGG 5 cut(s) 178, 253, 784, 1012, 1306
BseMII CTCAG 7 cut(s) 570, 872, 939, 960, 1035, 1275, 1574
BseNI ACTGG 2 cut(s) 75, 982
BseRI GAGGAG 6 cut(s) 224, 1015, 1100, 1562, 1600, 1699
BseXI GCAGC 7 cut(s) 16, 671, 693, 1039, 1077, 1127, 1681
Bsh1285I CGRYCG 1 cut(s) 312
BshFI GGCC 1 cut(s) 698
BsiEI CGRYCG 1 cut(s) 312
BsiHKCI CYCGRG 2 cut(s) 777, 957
BslFI GGGAC 2 cut(s) 1261, 1408
BslI CCNNNNNNNGG 5 cut(s) 178, 253, 784, 1012, 1306
BsmAI GTCTC 4 cut(s) 132, 1107, 1286, 1290
BsmFI GGGAC 2 cut(s) 1261, 1408
BsnI GGCC 1 cut(s) 698
Bso31I GGTCTC 1 cut(s) 132
BsoBI CYCGRG 2 cut(s) 777, 957
Bsp119I TTCGAA 3 cut(s) 376, 893, 1240
Bsp1407I TGTACA 1 cut(s) 932
Bsp143I GATC 3 cut(s) 309, 951, 1609
Bsp1720I GCTNAGC 1 cut(s) 672
BspACI CCGC 1 cut(s) 1579
BspANI GGCC 1 cut(s) 698
BspCNI CTCAG 7 cut(s) 571, 871, 940, 961, 1036, 1274, 1575
BspHI TCATGA 2 cut(s) 1132, 1491
BspLI GGNNCC 1 cut(s) 1004
BspMAI CTGCAG 3 cut(s) 999, 1057, 1146
BspQI GCTCTTC 1 cut(s) 111
BspT104I TTCGAA 3 cut(s) 376, 893, 1240
BspTNI GGTCTC 1 cut(s) 132
BsrGI TGTACA 1 cut(s) 932
BsrI ACTGG 2 cut(s) 75, 982
BssECI CCNNGG 2 cut(s) 172, 1563
BssMI GATC 3 cut(s) 309, 951, 1609
BssT1I CCWWGG 2 cut(s) 172, 1563
Bst2UI CCWGG 1 cut(s) 1301
Bst4CI ACNGT 5 cut(s) 541, 562, 824, 918, 1663
Bst6I CTCTTC 9 cut(s) 111, 394, 524, 822, 1077, 1197, 1299, 1520, 1539
BstAPI GCANNNNNTGC 1 cut(s) 1121
BstAUI TGTACA 1 cut(s) 932
BstBAI YACGTR 1 cut(s) 1460
BstBI TTCGAA 3 cut(s) 376, 893, 1240
BstC8I GCNNGC 4 cut(s) 95, 729, 1050, 1142
BstDEI CTNAG 8 cut(s) 579, 672, 858, 948, 969, 1044, 1261, 1583
BstENI CCTNNNNNAGG 4 cut(s) 176, 251, 1010, 1304
BstF5I GGATG 6 cut(s) 79, 457, 550, 641, 673, 1445
BstKTI GATC 3 cut(s) 312, 954, 1612
BstMAI GTCTC 4 cut(s) 132, 1107, 1286, 1290
BstMBI GATC 3 cut(s) 309, 951, 1609
BstMCI CGRYCG 1 cut(s) 312
BstMWI GCNNNNNNNGC 5 cut(s) 35, 668, 1121, 1181, 1652
BstNI CCWGG 1 cut(s) 1301
BstSCI CCNGG 1 cut(s) 1299
BstSFI CTRYAG 3 cut(s) 995, 1053, 1142
BstV1I GCAGC 7 cut(s) 16, 671, 693, 1039, 1077, 1127, 1681
BstV2I GAAGAC 2 cut(s) 567, 1082
BstX2I RGATCY 2 cut(s) 951, 1609
BstXI CCANNNNNNTGG 1 cut(s) 70
BstYI RGATCY 2 cut(s) 951, 1609
BsuRI GGCC 1 cut(s) 698
BtrI CACGTC 1 cut(s) 1033
BtsCI GGATG 6 cut(s) 79, 457, 550, 641, 673, 1445
BtsI GCAGTG 2 cut(s) 992, 1062
BtsIMutI CAGTG 5 cut(s) 537, 829, 992, 1062, 1659
Cac8I GCNNGC 4 cut(s) 95, 729, 1050, 1142
CciI TCATGA 2 cut(s) 1132, 1491
Cfr13I GGNCC 2 cut(s) 169, 697
Csp6I GTAC 2 cut(s) 159, 933
CviAII CATG 4 cut(s) 464, 842, 1133, 1492
CviQI GTAC 2 cut(s) 159, 933
DdeI CTNAG 8 cut(s) 579, 672, 858, 948, 969, 1044, 1261, 1583
DpnI GATC 3 cut(s) 311, 953, 1611
DpnII GATC 3 cut(s) 309, 951, 1609
DraI TTTAAA 1 cut(s) 1197
Eam1104I CTCTTC 9 cut(s) 111, 394, 524, 822, 1077, 1197, 1299, 1520, 1539
EarI CTCTTC 9 cut(s) 111, 394, 524, 822, 1077, 1197, 1299, 1520, 1539
Eco130I CCWWGG 2 cut(s) 172, 1563
Eco31I GGTCTC 1 cut(s) 132
Eco47I GGWCC 1 cut(s) 169
Eco57I CTGAAG 4 cut(s) 374, 524, 686, 1668
Eco72I CACGTG 1 cut(s) 1460
Eco88I CYCGRG 2 cut(s) 777, 957
EcoNI CCTNNNNNAGG 4 cut(s) 176, 251, 1010, 1304
EcoO109I RGGNCCY 1 cut(s) 697
EcoRI GAATTC 1 cut(s) 553
EcoRII CCWGG 1 cut(s) 1299
EcoT14I CCWWGG 2 cut(s) 172, 1563
EcoT22I ATGCAT 2 cut(s) 817, 1345
ErhI CCWWGG 2 cut(s) 172, 1563
FaeI CATG 4 cut(s) 467, 845, 1136, 1495
FaiI YATR 8 cut(s) 465, 843, 1134, 1165, 1167, 1469, 1482, 1493
FalI AAGNNNNNCTT 2 cut(s) 776, 808
FaqI GGGAC 2 cut(s) 1261, 1408
FatI CATG 4 cut(s) 463, 841, 1132, 1491
Fnu4HI GCNGC 8 cut(s) 30, 660, 707, 1053, 1091, 1116, 1580, 1695
FokI GGATG 6 cut(s) 86, 464, 557, 628, 680, 1432
Fsp4HI GCNGC 8 cut(s) 30, 660, 707, 1053, 1091, 1116, 1580, 1695
FspBI CTAG 6 cut(s) 173, 447, 458, 879, 1007, 1112
GluI GCNGC 8 cut(s) 30, 660, 707, 1053, 1091, 1116, 1580, 1695
GsuI CTGGAG 3 cut(s) 999, 1268, 1541
HaeIII GGCC 1 cut(s) 698
Hin1II CATG 4 cut(s) 467, 845, 1136, 1495
HindIII AAGCTT 4 cut(s) 602, 674, 888, 1182
HinfI GANTC 7 cut(s) 59, 508, 740, 895, 989, 1516, 1700
HphI GGTGA 3 cut(s) 599, 1040, 1580
Hpy166II GTNNAC 3 cut(s) 169, 933, 975
Hpy188I TCNGA 6 cut(s) 349, 475, 580, 636, 1264, 1705
Hpy8I GTNNAC 3 cut(s) 169, 933, 975
HpyCH4III ACNGT 5 cut(s) 541, 562, 824, 918, 1663
HpyCH4IV ACGT 2 cut(s) 1032, 1459
HpyF10VI GCNNNNNNNGC 5 cut(s) 35, 668, 1121, 1181, 1652
HpyF3I CTNAG 8 cut(s) 579, 672, 858, 948, 969, 1044, 1261, 1583
HpySE526I ACGT 2 cut(s) 1032, 1459
Hsp92II CATG 4 cut(s) 467, 845, 1136, 1495
Kzo9I GATC 3 cut(s) 309, 951, 1609
LguI GCTCTTC 1 cut(s) 111
LmnI GCTCC 7 cut(s) 90, 181, 211, 306, 1002, 1087, 1210
Lsp1109I GCAGC 7 cut(s) 16, 671, 693, 1039, 1077, 1127, 1681
LweI GCATC 5 cut(s) 598, 658, 1454, 1465, 1565
MaeI CTAG 6 cut(s) 173, 447, 458, 879, 1007, 1112
MaeII ACGT 2 cut(s) 1032, 1459
MaeIII GTNAC 4 cut(s) 1028, 1317, 1657, 1663
MalI GATC 3 cut(s) 311, 953, 1611
MboI GATC 3 cut(s) 309, 951, 1609
MflI RGATCY 2 cut(s) 951, 1609
MlyI GAGTC 2 cut(s) 734, 1525
MmeI TCCRAC 1 cut(s) 786
Mph1103I ATGCAT 2 cut(s) 817, 1345
MspA1I CMGCKG 4 cut(s) 13, 706, 1118, 1175
MspR9I CCNGG 1 cut(s) 1301
MvaI CCWGG 1 cut(s) 1301
MwoI GCNNNNNNNGC 5 cut(s) 35, 668, 1121, 1181, 1652
NdeII GATC 3 cut(s) 309, 951, 1609
NlaIII CATG 4 cut(s) 467, 845, 1136, 1495
NlaIV GGNNCC 1 cut(s) 1004
NmuCI GTSAC 3 cut(s) 1028, 1317, 1657
NsiI ATGCAT 2 cut(s) 817, 1345
NspV TTCGAA 3 cut(s) 376, 893, 1240
PagI TCATGA 2 cut(s) 1132, 1491
PciSI GCTCTTC 1 cut(s) 111
PfeI GAWTC 5 cut(s) 59, 508, 895, 989, 1700
PkrI GCNGC 8 cut(s) 31, 661, 708, 1054, 1092, 1117, 1581, 1696
Ple19I CGATCG 1 cut(s) 312
PleI GAGTC 2 cut(s) 734, 1524
PmaCI CACGTG 1 cut(s) 1460
PmlI CACGTG 1 cut(s) 1460
PpsI GAGTC 2 cut(s) 734, 1524
Ppu21I YACGTR 1 cut(s) 1460
PshBI ATTAAT 2 cut(s) 333, 1346
Psp6I CCWGG 1 cut(s) 1299
PspCI CACGTG 1 cut(s) 1460
PspGI CCWGG 1 cut(s) 1299
PspN4I GGNNCC 1 cut(s) 1004
PspPI GGNCC 2 cut(s) 169, 697
PstI CTGCAG 3 cut(s) 999, 1057, 1146
PsuI RGATCY 2 cut(s) 951, 1609
PvuI CGATCG 1 cut(s) 312
PvuII CAGCTG 4 cut(s) 13, 706, 1118, 1175
RsaI GTAC 2 cut(s) 160, 934
RsaNI GTAC 2 cut(s) 159, 933
SapI GCTCTTC 1 cut(s) 111
SatI GCNGC 8 cut(s) 30, 660, 707, 1053, 1091, 1116, 1580, 1695
Sau3AI GATC 3 cut(s) 309, 951, 1609
Sau96I GGNCC 2 cut(s) 169, 697
ScaI AGTACT 1 cut(s) 160
SchI GAGTC 2 cut(s) 734, 1525
ScrFI CCNGG 1 cut(s) 1301
SfaNI GCATC 5 cut(s) 598, 658, 1454, 1465, 1565
SfcI CTRYAG 3 cut(s) 995, 1053, 1142
SfuI TTCGAA 3 cut(s) 376, 893, 1240
SinI GGWCC 1 cut(s) 169
SmlI CTYRAG 4 cut(s) 722, 742, 793, 1289
SmoI CTYRAG 4 cut(s) 722, 742, 793, 1289
SsiI CCGC 1 cut(s) 1579
SspI AATATT 1 cut(s) 1575
SspMI CTAG 6 cut(s) 173, 447, 458, 879, 1007, 1112
StyD4I CCNGG 1 cut(s) 1299
StyI CCWWGG 2 cut(s) 172, 1563
TaaI ACNGT 5 cut(s) 541, 562, 824, 918, 1663
TaiI ACGT 2 cut(s) 1035, 1462
TaqI TCGA 6 cut(s) 261, 308, 312, 376, 893, 1240
TatI WGTACW 2 cut(s) 158, 932
TauI GCSGC 1 cut(s) 1582
TfiI GAWTC 5 cut(s) 59, 508, 895, 989, 1700
TscAI CASTG 5 cut(s) 544, 829, 999, 1062, 1666
TseFI GTSAC 3 cut(s) 1028, 1317, 1657
TseI GCWGC 7 cut(s) 29, 659, 706, 1052, 1090, 1115, 1694
Tsp45I GTSAC 3 cut(s) 1028, 1317, 1657
TspRI CASTG 5 cut(s) 544, 829, 999, 1062, 1666
VpaK11BI GGWCC 1 cut(s) 169
VspI ATTAAT 2 cut(s) 333, 1346
XagI CCTNNNNNAGG 4 cut(s) 176, 251, 1010, 1304
XapI RAATTY 4 cut(s) 145, 219, 553, 925
XbaI TCTAGA 1 cut(s) 878
XmaJI CCTAGG 1 cut(s) 172
XspI CTAG 6 cut(s) 173, 447, 458, 879, 1007, 1112
ZrmI AGTACT 1 cut(s) 160
Zsp2I ATGCAT 2 cut(s) 817, 1345
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.