Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0003650

Physical Location & Seq

Genomic Coordinates Forward (+)

43109530 .. 43112714

Gene Structure 3185 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0345500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2463 bp

ATGTCACTGTGTCGCACCGACCGGAAAATGTTTTTGAAAGCTCTGCTTCTCTTCCTCCTCTTTCAGTTCTGCACTTCCAGGGACACCATAAAAGGGAATCAAGAACAATTGAAGGATGATGATGGAGACTATTTAGTGTCCAAAGAAAGCAAGTTTGAGTTGGGTTTCTTCAGCCCCGGAAATTCTAGCTACAGGTATGTTGGAATTTGGTATTCTCAGACTAGAGTATCCAATAAGACAGTGGTGTGGGTTGCAAACAGGAACAATCCCATCAATGATACCTCTGGTGTGCTCACAATAAACAGATATGGAGAACTAGTCCTTCATGCTTATAACATGGAGAGCACTCCTATTTGGTCTACTAATGTGTCGCGGTCGGTTCAAAATGTTAACACAAGCACTTTATCTGCACAGCTTTTAGATACAGGAAATTTAGTTGTGTTCCAGGCTGATAATAATGAAATCTATGTATGGCAAAGTTTTGATTATCCTACTGATACTATAATTCCAGGTATGAAAGTCGGGGTGAATTGGAAAACTGGGCTAGAATGGGTTTTAACATCTTGGAAGTCACAAGATGACCCTGGAACTGGGGACTATACCTTCAGGTCCTATCCATATCAGATCGCATCCCCCCAATTTTTTATGTACAAGGGTTTGAGTAAGTATTACCGAACTCATCCAGGGCCAACGCCTGGTTTGGTCACTAGTCAAGAGGAAACTTATTATTCCATGAATGAAACCAATGCAATTACAAGAGTAACAGTGACTAATTCTGCGTTCGAGCACCTTCATTGGGATGATGATGGCCTTCAATGGAAGGTAGACCTCTCTGCACCGAAGTCCCGGTGTGACGGGTATGGAAAGTGTGGTGCCAACAGCAGATGTAGCCCTGACAACGTTAATGTGTTTGAGTGTGAATGTTTATCAGGGTATGTGCCTAATTCTATAAGTGATTGGAATCAGAAAAATGGGTCAGGTGGATGTGTGAGTAATCGACTTGGTTTGTTGAAGTGTGGAGATGGAGACGGGTTTGTGAAGGTGGCAAGAGTTAAATATCCAGACACATCGATAGCAGCATGGTTAAAATCAGGAATGAGTGCCAAAGAGTGTGAGCAGGAGTGCCTAAGAAATTGTTCTTGCAAAGCATATTTGAGCACTGAAAATGAAGGGATTGTTGATTGCTTGACATGGTATGATGACTTGATGGACATTTTAACGTACACAGAGTTTGGACAAGATCTCTACGTTCGTGTGAATGCAACTGTGTTAGCTGCAAATGCCGGAAGATCACAAGGTTTCTTGGAAAGGAGGGGTATGCCGGCCATTCCAATACTGTCTGCTGTGCTGGCATTGGTACTAATCATTATGCTTCTCTATTGGTGGCGTAAGAAGATCAGGAACACAAAAGGCATAGATTTTGTGGAGGCAGAGGAGCTTGAGGAAAGTCAGAGACACCCCGAATTGCAATTTTTCGATCTTGACACAATAATAGCAGCCACAGACAACTTCTCTCGTGTCAATGAACTTGGCCATGGTGGTTTTGGCTCCGTTTATAAGGGTCAACTGCCAAATGAACAAAAAGTTGCTGTGAAAAGATTGTCCAAAACTTCAGGACAAGGGATTGAGGAATTCAAAAATGAAGTTGCACTTATAGCAAGACTTCAACACAGGAATCTGGTGAAACTTTTAGGCTGTTGTATAAAGGGAGAAGAAAGGATGTTAGTCCTAGAATACATGCCTAACAAAAGCTTGGACTCCTTTCTGTTTGATAACAGAAGACGGTCCTTCTTGGATTGGAAAAGGCGCTTTGAAATTATCAACGGGATTGCTCGTGGGATTCTGTATCTTCACCAAGACTCAAGATTGAGGATTATCCATAGAGATCTAAAAACTAGCAATGTTCTACTAGATGATGAGATGAACCCAAAAATTTCTGATTTTGGCATGGCTAGAATATTCGACGGGGACCAACTGCAAGATAAGACAAAACGAATTGTCGGAACATATGGCTACATGTCACCGGAGTACGCAGTATTTGGGAGATTTTCCACGAAATCTGATGTCTTTAGTTTTGGGATCATAATGTTGGAGATTGTAAGTGGGCAAAGAAACAATAGTTCTGATCTGGAGGATCCTTCCGTGAACTTGATAGGACGTGTTTGGGAGCTCTGGAGAGAAGGTAGAGCATTAGATATTGTTGATTCGACACTGAAGTCATGTCAGCCTAATGAAGTCATGAGATGCATACAAGTTGCGCTCTTGTGTGTACAAGAAGATTCAAAGGACCGACCTGCCATGTCAGCCATTGTTATCATGTTGAGTGGTGAAGCATCTCCTCCATTGCCTAAGCAGCCAGCATTTGTTTACAGAAGAGATTCTGGCACTGATGTTGATCCATTATTTCCAAACCGTTCTTCTTCTACAAACGACCTGACAATAACTACAATGGAAGCTCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0009295 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0016363 GO:0031974 GO:0031976 GO:0031981 GO:0031984 GO:0034357 GO:0034399 GO:0042646 GO:0042651 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0070013 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

820

Amino Acids

92.83

Weight (kDa)

5.82

Isoelectric Point (pI)

39.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	80 - 190	1.2e-35	D-mannose binding lectin
S_locus_glycop	PF00954	237 - 315	1.5e-13	S-locus glycoprotein domain
PAN_2	PF08276	339 - 405	2.6e-17	PAN-like domain
Pkinase	PF00069	505 - 770	2.5e-45	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	507 - 772	6.9e-52	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003650)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16000
fragaria_vesca	FvH4_6g31081 FvH4_6g31081 FvH4_6g31081 FvH4_6g31081 FvH4_6g31081 FvH4_6g31081 FvH4_6g31081 FvH4_6g31081 FvH4_6g31081
malus_domestica	MD09G1212900.v1.1 MD09G1213300.v1.1 MD09G1213400.v1.1 MD09G1213500.v1.1 MD09G1213800.v1.1 MD17G1195700.v1.1
prunus_persica	Prupe.3G071700_v2.0.a1
pyrus_communis	pycom09g13050 pycom17g20130 pycom17g20140
rosa_chinensis	RchiOBHm_Chr2g0137781
rosa_laevigata	RLG00000019675
rosa_multiflora	Rmu_sc0008635.1_g000002
rosa_roxburghii	Rroxscaffold_2G00106850
rosa_rugosa	Rorug02G0345400 Rorug02G0345500 Rorug02G0345600 Rorug02G0345600 Rorug02G0345700 Rorug02G0345700
rosa_samantha	Rh2AG392700 Rh2BG400400 Rh2CG379400 Rh2DG415300
rosa_wichuraiana	Rw2G032170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	333, 1557
AasI	GACNNNNNNGTC	1 cut(s)	2215
Acc36I	ACCTGC	1 cut(s)	2302
AccB1I	GGYRCC	1 cut(s)	872
AccB7I	CCANNNNNTGG	1 cut(s)	695
AccI	GTMKAC	2 cut(s)	359, 825
AccII	CGCG	1 cut(s)	373
AciI	CCGC	1 cut(s)	373
AclI	AACGTT	1 cut(s)	900
AclWI	GGATC	4 cut(s)	2087, 2129, 2142, 2390
AcoI	YGGCCR	2 cut(s)	1323, 1531
AcsI	RAATTY	5 cut(s)	181, 204, 430, 1631, 1932
AcuI	CTGAAG	4 cut(s)	154, 589, 1596, 2234
AfaI	GTAC	5 cut(s)	650, 1223, 1359, 2030, 2271
AfiI	CCNNNNNNNGG	4 cut(s)	93, 590, 695, 796
AflIII	ACRYGT	2 cut(s)	2016, 2158
AgsI	TTSAA	9 cut(s)	37, 112, 383, 815, 1012, 1636, 1667, 1814, 2283
AhlI	ACTAGT	2 cut(s)	316, 707
AjiI	CACGTC	1 cut(s)	2159
AjnI	CCWGG	6 cut(s)	77, 444, 508, 583, 682, 694
AjuI	GAANNNNNNNTTGG	2 cut(s)	2401, 2433
AluBI	AGCT	8 cut(s)	41, 189, 415, 1274, 1438, 1752, 2170, 2456
AluI	AGCT	8 cut(s)	41, 189, 415, 1274, 1438, 1752, 2170, 2456
Alw21I	GWGCWC	5 cut(s)	294, 347, 789, 1160, 2172
Alw26I	GTCTC	3 cut(s)	120, 1020, 1447
AlwI	GGATC	4 cut(s)	2087, 2129, 2142, 2390
AoxI	GGCC	4 cut(s)	686, 808, 1323, 1531
ApeKI	GCWGC	4 cut(s)	1076, 1274, 1496, 2353
ApoI	RAATTY	5 cut(s)	181, 204, 430, 1631, 1932
Asp700I	GAANNNNTTC	2 cut(s)	1135, 2377
AspLEI	GCGC	2 cut(s)	1809, 2260
AspS9I	GGNCC	5 cut(s)	609, 686, 1785, 1969, 2287
AsuC2I	CCSGG	2 cut(s)	177, 847
AsuHPI	GGTGA	5 cut(s)	538, 1693, 1844, 2013, 2339
AvaII	GGWCC	4 cut(s)	609, 1785, 1969, 2287
BaeI	ACNNNNGTAYC	2 cut(s)	210, 243
BalI	TGGCCA	1 cut(s)	1533
BamHI	GGATCC	1 cut(s)	2134
BanI	GGYRCC	1 cut(s)	872
BanII	GRGCYC	1 cut(s)	2172
BauI	CACGAG	2 cut(s)	1515, 1833
BbsI	GAAGAC	1 cut(s)	1786
Bbv12I	GWGCWC	5 cut(s)	294, 347, 789, 1160, 2172
BbvI	GCAGC	4 cut(s)	1088, 1261, 1508, 2365
BccI	CCATC	5 cut(s)	116, 278, 800, 1016, 1201
BciT130I	CCWGG	6 cut(s)	79, 446, 510, 585, 684, 696
BciVI	GTATCC	1 cut(s)	238
BcnI	CCSGG	2 cut(s)	177, 847
BcoDI	GTCTC	3 cut(s)	120, 1020, 1447
BcuI	ACTAGT	2 cut(s)	316, 707
BfaI	CTAG	9 cut(s)	186, 222, 317, 545, 708, 1730, 1896, 1910, 1953
BfmI	CTRYAG	1 cut(s)	190
BfoI	RGCGCY	1 cut(s)	1810
BfuAI	ACCTGC	1 cut(s)	2302
BfuI	GTATCC	1 cut(s)	238
BglII	AGATCT	2 cut(s)	1240, 1885
BisI	GCNGC	4 cut(s)	1077, 1275, 1497, 2354
BlsI	GCNGC	4 cut(s)	1078, 1276, 1498, 2355
Bme1390I	CCNGG	8 cut(s)	79, 177, 446, 510, 585, 684, 696, 847
Bme18I	GGWCC	4 cut(s)	609, 1785, 1969, 2287
BmgBI	CACGTC	1 cut(s)	2159
BmgT120I	GGNCC	5 cut(s)	609, 686, 1785, 1969, 2287
BmiI	GGNNCC	4 cut(s)	874, 1549, 1970, 2136
BmrFI	CCNGG	8 cut(s)	79, 177, 446, 510, 585, 684, 696, 847
BmrI	ACTGGG	2 cut(s)	549, 600
BmsI	GCATC	3 cut(s)	638, 2234, 2342
BmuI	ACTGGG	2 cut(s)	549, 600
BpiI	GAAGAC	1 cut(s)	1786
BpmI	CTGGAG	2 cut(s)	2150, 2194
Bpu10I	CCTNAGC	1 cut(s)	2349
BpuEI	CTTGAG	2 cut(s)	1460, 1846
BpuMI	CCSGG	2 cut(s)	177, 847
Bsa29I	ATCGAT	1 cut(s)	1070
BsaBI	GATNNNNATC	2 cut(s)	960, 2394
BsaJI	CCNNGG	5 cut(s)	78, 175, 583, 683, 1534
BsaWI	WCCGGW	2 cut(s)	21, 2023
BsaXI	ACNNNNNCTCC	4 cut(s)	303, 333, 2167, 2197
Bsc4I	CCNNNNNNNGG	4 cut(s)	93, 590, 695, 796
Bse118I	RCCGGY	1 cut(s)	1321
Bse1I	ACTGG	2 cut(s)	544, 595
Bse3DI	GCAATG	2 cut(s)	1906, 2342
Bse8I	GATNNNNATC	2 cut(s)	960, 2394
BseBI	CCWGG	6 cut(s)	79, 446, 510, 585, 684, 696
BseCI	ATCGAT	1 cut(s)	1070
BseDI	CCNNGG	5 cut(s)	78, 175, 583, 683, 1534
BseGI	GGATG	6 cut(s)	121, 629, 679, 805, 989, 1725
BseJI	GATNNNNATC	2 cut(s)	960, 2394
BseLI	CCNNNNNNNGG	4 cut(s)	93, 590, 695, 796
BseMI	GCAATG	2 cut(s)	1906, 2342
BseMII	CTCAG	1 cut(s)	230
BseNI	ACTGG	2 cut(s)	544, 595
BseRI	GAGGAG	3 cut(s)	47, 1448, 2328
BseXI	GCAGC	4 cut(s)	1088, 1261, 1508, 2365
BsgI	GTGCAG	3 cut(s)	55, 393, 819
Bsh1236I	CGCG	1 cut(s)	373
Bsh1285I	CGRYCG	2 cut(s)	22, 377
BshFI	GGCC	4 cut(s)	688, 810, 1325, 1533
BshNI	GGYRCC	1 cut(s)	872
BshVI	ATCGAT	1 cut(s)	1070
BsiEI	CGRYCG	2 cut(s)	22, 377
BsiHKAI	GWGCWC	5 cut(s)	294, 347, 789, 1160, 2172
BsiSI	CCGG	6 cut(s)	22, 177, 847, 1284, 1322, 2024
BslFI	GGGAC	4 cut(s)	95, 608, 829, 1982
BslI	CCNNNNNNNGG	4 cut(s)	93, 590, 695, 796
BsmAI	GTCTC	3 cut(s)	120, 1020, 1447
BsmBI	CGTCTC	1 cut(s)	1020
BsmFI	GGGAC	4 cut(s)	95, 608, 829, 1982
BsmI	GAATGC	1 cut(s)	1264
BsnI	GGCC	4 cut(s)	688, 810, 1325, 1533
Bsp1286I	GDGCHC	5 cut(s)	294, 347, 789, 1160, 2172
Bsp1407I	TGTACA	2 cut(s)	648, 2269
Bsp19I	CCATGG	1 cut(s)	1534
BspACI	CCGC	1 cut(s)	373
BspANI	GGCC	4 cut(s)	688, 810, 1325, 1533
BspCNI	CTCAG	1 cut(s)	229
BspDI	ATCGAT	1 cut(s)	1070
BspFNI	CGCG	1 cut(s)	373
BspHI	TCATGA	1 cut(s)	2238
BspLI	GGNNCC	4 cut(s)	874, 1549, 1970, 2136
BspMI	ACCTGC	1 cut(s)	2302
BspPI	GGATC	4 cut(s)	2087, 2129, 2142, 2390
BspT107I	GGYRCC	1 cut(s)	872
BsrDI	GCAATG	2 cut(s)	1906, 2342
BsrFI	RCCGGY	1 cut(s)	1321
BsrGI	TGTACA	2 cut(s)	648, 2269
BsrI	ACTGG	2 cut(s)	544, 595
BssAI	RCCGGY	1 cut(s)	1321
BssECI	CCNNGG	5 cut(s)	78, 175, 583, 683, 1534
BssSI	CACGAG	2 cut(s)	1515, 1833
BssT1I	CCWWGG	1 cut(s)	1534
Bst2BI	CACGAG	2 cut(s)	1515, 1833
Bst2UI	CCWGG	6 cut(s)	79, 446, 510, 585, 684, 696
Bst4CI	ACNGT	7 cut(s)	9, 241, 766, 1267, 1338, 1785, 2414
Bst6I	CTCTTC	2 cut(s)	56, 2368
BstAUI	TGTACA	2 cut(s)	648, 2269
BstC8I	GCNNGC	3 cut(s)	1323, 1350, 2358
BstDEI	CTNAG	3 cut(s)	216, 1127, 2349
BstDSI	CCRYGG	1 cut(s)	1534
BstF5I	GGATG	6 cut(s)	121, 629, 679, 805, 989, 1725
BstFNI	CGCG	1 cut(s)	373
BstH2I	RGCGCY	1 cut(s)	1810
BstHHI	GCGC	2 cut(s)	1809, 2260
BstMAI	GTCTC	3 cut(s)	120, 1020, 1447
BstMCI	CGRYCG	2 cut(s)	22, 377
BstMWI	GCNNNNNNNGC	6 cut(s)	888, 1280, 1349, 1655, 2303, 2353
BstNI	CCWGG	6 cut(s)	79, 446, 510, 585, 684, 696
BstNSI	RCATGY	2 cut(s)	1741, 2020
BstSCI	CCNGG	8 cut(s)	77, 175, 444, 508, 583, 682, 694, 845
BstSFI	CTRYAG	1 cut(s)	190
BstUI	CGCG	1 cut(s)	373
BstV1I	GCAGC	4 cut(s)	1088, 1261, 1508, 2365
BstV2I	GAAGAC	1 cut(s)	1786
BstX2I	RGATCY	3 cut(s)	1240, 1885, 2134
BstYI	RGATCY	3 cut(s)	1240, 1885, 2134
Bsu15I	ATCGAT	1 cut(s)	1070
BsuI	GTATCC	1 cut(s)	238
BsuRI	GGCC	4 cut(s)	688, 810, 1325, 1533
BsuTUI	ATCGAT	1 cut(s)	1070
BtgI	CCRYGG	1 cut(s)	1534
BtrI	CACGTC	1 cut(s)	2159
BtsCI	GGATG	6 cut(s)	121, 629, 679, 805, 989, 1725
BtsIMutI	CAGTG	6 cut(s)	5, 246, 771, 1158, 2210, 2385
BveI	ACCTGC	1 cut(s)	2302
Cac8I	GCNNGC	3 cut(s)	1323, 1350, 2358
CciI	TCATGA	1 cut(s)	2238
CfoI	GCGC	2 cut(s)	1809, 2260
Cfr10I	RCCGGY	1 cut(s)	1321
Cfr13I	GGNCC	5 cut(s)	609, 686, 1785, 1969, 2287
ClaI	ATCGAT	1 cut(s)	1070
Csp6I	GTAC	5 cut(s)	649, 1222, 1358, 2029, 2270
CviQI	GTAC	5 cut(s)	649, 1222, 1358, 2029, 2270
DdeI	CTNAG	3 cut(s)	216, 1127, 2349
DrdI	GACNNNNNNGTC	1 cut(s)	2215
DseDI	GACNNNNNNGTC	1 cut(s)	2215
EaeI	YGGCCR	2 cut(s)	1323, 1531
Eam1104I	CTCTTC	2 cut(s)	56, 2368
EarI	CTCTTC	2 cut(s)	56, 2368
Ecl136II	GAGCTC	1 cut(s)	2170
Eco130I	CCWWGG	1 cut(s)	1534
Eco24I	GRGCYC	1 cut(s)	2172
Eco47I	GGWCC	4 cut(s)	609, 1785, 1969, 2287
Eco53kI	GAGCTC	1 cut(s)	2170
Eco57I	CTGAAG	4 cut(s)	154, 589, 1596, 2234
EcoICRI	GAGCTC	1 cut(s)	2170
EcoO109I	RGGNCCY	1 cut(s)	609
EcoRI	GAATTC	1 cut(s)	1631
EcoRII	CCWGG	6 cut(s)	77, 444, 508, 583, 682, 694
EcoT14I	CCWWGG	1 cut(s)	1534
EcoT22I	ATGCAT	1 cut(s)	2249
EcoT38I	GRGCYC	1 cut(s)	2172
ErhI	CCWWGG	1 cut(s)	1534
Esp3I	CGTCTC	1 cut(s)	1020
FalI	AAGNNNNNCTT	4 cut(s)	30, 62, 1635, 1667
FaqI	GGGAC	4 cut(s)	95, 608, 829, 1982
FauNDI	CATATG	1 cut(s)	2008
FblI	GTMKAC	2 cut(s)	359, 825
Fnu4HI	GCNGC	4 cut(s)	1077, 1275, 1497, 2354
FokI	GGATG	6 cut(s)	128, 616, 666, 812, 996, 1732
FriOI	GRGCYC	1 cut(s)	2172
Fsp4HI	GCNGC	4 cut(s)	1077, 1275, 1497, 2354
FspBI	CTAG	9 cut(s)	186, 222, 317, 545, 708, 1730, 1896, 1910, 1953
GlaI	GCGC	2 cut(s)	1808, 2259
GluI	GCNGC	4 cut(s)	1077, 1275, 1497, 2354
GsuI	CTGGAG	2 cut(s)	2150, 2194
HaeII	RGCGCY	1 cut(s)	1810
HaeIII	GGCC	4 cut(s)	688, 810, 1325, 1533
HapII	CCGG	6 cut(s)	22, 177, 847, 1284, 1322, 2024
HhaI	GCGC	2 cut(s)	1809, 2260
Hin6I	GCGC	2 cut(s)	1807, 2258
HinP1I	GCGC	2 cut(s)	1807, 2258
HincII	GTYRAC	2 cut(s)	391, 1565
HindII	GTYRAC	2 cut(s)	391, 1565
HindIII	AAGCTT	1 cut(s)	1750
HinfI	GANTC	9 cut(s)	97, 961, 1675, 1757, 1840, 1859, 2204, 2279, 2378
HpaI	GTTAAC	1 cut(s)	391
HpaII	CCGG	6 cut(s)	22, 177, 847, 1284, 1322, 2024
HphI	GGTGA	5 cut(s)	538, 1693, 1844, 2013, 2339
Hpy166II	GTNNAC	8 cut(s)	360, 391, 826, 1224, 1565, 2146, 2270, 2368
Hpy188I	TCNGA	8 cut(s)	219, 624, 966, 1452, 1939, 2003, 2062, 2125
Hpy8I	GTNNAC	8 cut(s)	360, 391, 826, 1224, 1565, 2146, 2270, 2368
Hpy99I	CGWCG	1 cut(s)	1967
HpyCH4III	ACNGT	7 cut(s)	9, 241, 766, 1267, 1338, 1785, 2414
HpyCH4IV	ACGT	4 cut(s)	900, 1220, 1248, 2158
HpyF10VI	GCNNNNNNNGC	6 cut(s)	888, 1280, 1349, 1655, 2303, 2353
HpyF3I	CTNAG	3 cut(s)	216, 1127, 2349
HpySE526I	ACGT	4 cut(s)	900, 1220, 1248, 2158
HspAI	GCGC	2 cut(s)	1807, 2258
KroI	GCCGGC	1 cut(s)	1321
KroNI	GCCGGC	1 cut(s)	1323
KspAI	GTTAAC	1 cut(s)	391
LmnI	GCTCC	3 cut(s)	1435, 1553, 2167
Lsp1109I	GCAGC	4 cut(s)	1088, 1261, 1508, 2365
LweI	GCATC	3 cut(s)	638, 2234, 2342
MaeI	CTAG	9 cut(s)	186, 222, 317, 545, 708, 1730, 1896, 1910, 1953
MaeII	ACGT	4 cut(s)	900, 1220, 1248, 2158
MaeIII	GTNAC	7 cut(s)	3, 570, 703, 760, 766, 851, 2019
MfeI	CAATTG	1 cut(s)	107
MflI	RGATCY	3 cut(s)	1240, 1885, 2134
MhlI	GDGCHC	5 cut(s)	294, 347, 789, 1160, 2172
MlsI	TGGCCA	1 cut(s)	1533
MluNI	TGGCCA	1 cut(s)	1533
MlyI	GAGTC	2 cut(s)	1751, 1853
MmeI	TCCRAC	3 cut(s)	181, 1981, 2070
Mox20I	TGGCCA	1 cut(s)	1533
Mph1103I	ATGCAT	1 cut(s)	2249
MroNI	GCCGGC	1 cut(s)	1321
MroXI	GAANNNNTTC	2 cut(s)	1135, 2377
MscI	TGGCCA	1 cut(s)	1533
MseI	TTAA	6 cut(s)	390, 557, 903, 1053, 1085, 1217
MslI	CAYNNNNRTG	1 cut(s)	798
Msp20I	TGGCCA	1 cut(s)	1533
MspI	CCGG	6 cut(s)	22, 177, 847, 1284, 1322, 2024
MspR9I	CCNGG	8 cut(s)	79, 177, 446, 510, 585, 684, 696, 847
MunI	CAATTG	1 cut(s)	107
Mva1269I	GAATGC	1 cut(s)	1264
MvaI	CCWGG	6 cut(s)	79, 446, 510, 585, 684, 696
MvnI	CGCG	1 cut(s)	373
MwoI	GCNNNNNNNGC	6 cut(s)	888, 1280, 1349, 1655, 2303, 2353
NaeI	GCCGGC	1 cut(s)	1323
NciI	CCSGG	2 cut(s)	177, 847
NcoI	CCATGG	1 cut(s)	1534
NdeI	CATATG	1 cut(s)	2008
NgoMIV	GCCGGC	1 cut(s)	1321
NlaIV	GGNNCC	4 cut(s)	874, 1549, 1970, 2136
NmuCI	GTSAC	6 cut(s)	3, 570, 703, 766, 851, 2019
NsiI	ATGCAT	1 cut(s)	2249
NspI	RCATGY	2 cut(s)	1741, 2020
PagI	TCATGA	1 cut(s)	2238
PciI	ACATGT	1 cut(s)	2016
PctI	GAATGC	1 cut(s)	1264
PdiI	GCCGGC	1 cut(s)	1323
PdmI	GAANNNNTTC	2 cut(s)	1135, 2377
PfeI	GAWTC	7 cut(s)	97, 961, 1675, 1840, 2204, 2279, 2378
PflMI	CCANNNNNTGG	1 cut(s)	695
PkrI	GCNGC	4 cut(s)	1078, 1276, 1498, 2355
PleI	GAGTC	2 cut(s)	1751, 1853
PpsI	GAGTC	2 cut(s)	1751, 1853
PpuMI	RGGWCCY	1 cut(s)	609
PscI	ACATGT	1 cut(s)	2016
PsiI	TTATAA	2 cut(s)	333, 1557
Psp124BI	GAGCTC	1 cut(s)	2172
Psp1406I	AACGTT	1 cut(s)	900
Psp5II	RGGWCCY	1 cut(s)	609
Psp6I	CCWGG	6 cut(s)	77, 444, 508, 583, 682, 694
PspGI	CCWGG	6 cut(s)	77, 444, 508, 583, 682, 694
PspN4I	GGNNCC	4 cut(s)	874, 1549, 1970, 2136
PspPI	GGNCC	5 cut(s)	609, 686, 1785, 1969, 2287
PspPPI	RGGWCCY	1 cut(s)	609
PsuI	RGATCY	3 cut(s)	1240, 1885, 2134
RsaI	GTAC	5 cut(s)	650, 1223, 1359, 2030, 2271
RsaNI	GTAC	5 cut(s)	649, 1222, 1358, 2029, 2270
RseI	CAYNNNNRTG	1 cut(s)	798
SacI	GAGCTC	1 cut(s)	2172
SaqAI	TTAA	6 cut(s)	390, 557, 903, 1053, 1085, 1217
SatI	GCNGC	4 cut(s)	1077, 1275, 1497, 2354
Sau96I	GGNCC	5 cut(s)	609, 686, 1785, 1969, 2287
SchI	GAGTC	2 cut(s)	1751, 1853
ScrFI	CCNGG	8 cut(s)	79, 177, 446, 510, 585, 684, 696, 847
SduI	GDGCHC	5 cut(s)	294, 347, 789, 1160, 2172
SfaNI	GCATC	3 cut(s)	638, 2234, 2342
SfcI	CTRYAG	1 cut(s)	190
SinI	GGWCC	4 cut(s)	609, 1785, 1969, 2287
SmiMI	CAYNNNNRTG	1 cut(s)	798
SmlI	CTYRAG	2 cut(s)	1439, 1861
SmoI	CTYRAG	2 cut(s)	1439, 1861
SpeI	ACTAGT	2 cut(s)	316, 707
SsiI	CCGC	1 cut(s)	373
SspI	AATATT	1 cut(s)	1959
SspMI	CTAG	9 cut(s)	186, 222, 317, 545, 708, 1730, 1896, 1910, 1953
SstI	GAGCTC	1 cut(s)	2172
StyD4I	CCNGG	8 cut(s)	77, 175, 444, 508, 583, 682, 694, 845
StyI	CCWWGG	1 cut(s)	1534
TaaI	ACNGT	7 cut(s)	9, 241, 766, 1267, 1338, 1785, 2414
TaiI	ACGT	4 cut(s)	903, 1223, 1251, 2161
TaqI	TCGA	7 cut(s)	783, 997, 1070, 1476, 1962, 2207, 2458
TaqII	GACCGA	1 cut(s)	2304
TatI	WGTACW	2 cut(s)	648, 2269
TfiI	GAWTC	7 cut(s)	97, 961, 1675, 1840, 2204, 2279, 2378
Tru1I	TTAA	6 cut(s)	390, 557, 903, 1053, 1085, 1217
Tru9I	TTAA	6 cut(s)	390, 557, 903, 1053, 1085, 1217
TscAI	CASTG	6 cut(s)	12, 246, 771, 1165, 2217, 2392
TseFI	GTSAC	6 cut(s)	3, 570, 703, 766, 851, 2019
TseI	GCWGC	4 cut(s)	1076, 1274, 1496, 2353
Tsp45I	GTSAC	6 cut(s)	3, 570, 703, 766, 851, 2019
TspGWI	ACGGA	2 cut(s)	1540, 2131
TspRI	CASTG	6 cut(s)	12, 246, 771, 1165, 2217, 2392
Van91I	CCANNNNNTGG	1 cut(s)	695
VpaK11BI	GGWCC	4 cut(s)	609, 1785, 1969, 2287
XapI	RAATTY	5 cut(s)	181, 204, 430, 1631, 1932
XceI	RCATGY	2 cut(s)	1741, 2020
XcmI	CCANNNNNNNNNTGG	2 cut(s)	238, 1541
XmiI	GTMKAC	2 cut(s)	359, 825
XmnI	GAANNNNTTC	2 cut(s)	1135, 2377
XspI	CTAG	9 cut(s)	186, 222, 317, 545, 708, 1730, 1896, 1910, 1953
Zsp2I	ATGCAT	1 cut(s)	2249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.