Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0003650

Physical Location & Seq

Genomic Coordinates Forward (+)

43150055 .. 43154749

Gene Structure 4695 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0345700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGGCTCAGTTGCTGTCCCCTGTTTTCACTGAAGCTCTCAAGTTCCAGAACCCATTACTACCACCGAGCCTGTGCTCAAGAAGCCCATGGCGCGTGTTGGCCAGGACCGGCAATAATAGCTTGAGTTTGATGGGACATGCTGGGAAGCGAAGAGCCATTGGCAGAGTCAGAGTCGCAACTGAGGGCTCTACTTCAGTTGACGCTTTGGCTGATGACTATTACTCTGTCTTGGGTTTGCTTCCAGATGCAACGCCAGCACAGATCAAGAAAGCCTATTACAATTGTATGAAGGCTTGTCATCCTGACTTGAGTGGTGATAATCCGGAGACAACAAATTTCTGTATGTTCATCAATGAGGTCTATGAGGTTCTCAGTGACCCTGTGCAGCGCATGGTTTATGATGAAATTCATGGTTATGCATTGACTGCAATCAATCCTTTTGTAGATAACTCTGCACCAAAAGATCACACATTCGTTGATGAGTTTAGCTGCATAGGCTGCAAAAACTGTGCCAATGTTGCACCAGATGTCTTTGCAATCGAAGAAGACTTTGGAAGAGCCAGAGTATACAGTCAGTGTGGAAATCAAGATTTAGTTCAACAAGCAATTGATAGTTGCCCTGTTGATTGCATCCATTGGACTTCTGCTGCACAACTATCATTGCTTGAAGATGAAATGCGCAGAGTAGAAAGAGTAAATGTCGCACTGATGCTTGCAGGTATGGGCTCAGCATCAGCGGATGTTTTCAGAACGGCAAGTTCTCGATGGCAAAAGAGACAAGCAAAAGTCTTGGCACAAGCTAAAGTGAGGATGACAAAGCAGAAGGATTCAGATAAAACGGAATCATACTGGGATAATGTATGGGGCAAACCCAAAGACTACCAGAGTTCAGAGGAGGAAACAAAAGAAAGAGCAAAGAGAGCTGCCGCTGCAGCTCGAAGATGGAGAGAGTACTCAAGGAGGGGTGCTGATAAGCCTCCTAGCTATAAACTTCCAGAGGCAATCTCCAACAATGAAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0009295 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0016363 GO:0031974 GO:0031976 GO:0031981 GO:0031984 GO:0034357 GO:0034399 GO:0042646 GO:0042651 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0070013 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

340

Amino Acids

37.99

Weight (kDa)

6.94

Isoelectric Point (pI)

50.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	72 - 134	2.4e-18	DnaJ domain
Fer4_13	PF13370	159 - 213	1.2e-17	4Fe-4S single cluster domain of Ferredoxin I
Fer4_15	PF13459	159 - 213	2.3e-07	4Fe-4S single cluster domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003650)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16000
fragaria_vesca	FvH4_6g31081 FvH4_6g31081 FvH4_6g31081 FvH4_6g31081 FvH4_6g31081 FvH4_6g31081 FvH4_6g31081 FvH4_6g31081 FvH4_6g31081
malus_domestica	MD09G1212900.v1.1 MD09G1213300.v1.1 MD09G1213400.v1.1 MD09G1213500.v1.1 MD09G1213800.v1.1 MD17G1195700.v1.1
prunus_persica	Prupe.3G071700_v2.0.a1
pyrus_communis	pycom09g13050 pycom17g20130 pycom17g20140
rosa_chinensis	RchiOBHm_Chr2g0137781
rosa_laevigata	RLG00000019675
rosa_multiflora	Rmu_sc0008635.1_g000002
rosa_roxburghii	Rroxscaffold_2G00106850
rosa_rugosa	Rorug02G0345400 Rorug02G0345500 Rorug02G0345600 Rorug02G0345600 Rorug02G0345700 Rorug02G0345700
rosa_samantha	Rh2AG392700 Rh2BG400400 Rh2CG379400 Rh2DG415300
rosa_wichuraiana	Rw2G032170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	680
Acc36I	ACCTGC	1 cut(s)	707
AccI	GTMKAC	1 cut(s)	567
AccII	CGCG	1 cut(s)	93
AccIII	TCCGGA	1 cut(s)	322
AciI	CCGC	2 cut(s)	737, 927
AcoI	YGGCCR	1 cut(s)	99
AcsI	RAATTY	2 cut(s)	334, 405
AcuI	CTGAAG	2 cut(s)	51, 177
AfaI	GTAC	1 cut(s)	953
AgsI	TTSAA	2 cut(s)	599, 668
AjnI	CCWGG	1 cut(s)	101
AjuI	GAANNNNNNNTTGG	2 cut(s)	534, 566
AluBI	AGCT	7 cut(s)	35, 120, 489, 800, 923, 935, 984
AluI	AGCT	7 cut(s)	35, 120, 489, 800, 923, 935, 984
Alw21I	GWGCWC	1 cut(s)	77
Alw26I	GTCTC	2 cut(s)	320, 769
AlwNI	CAGNNNCTG	1 cut(s)	13
Aor13HI	TCCGGA	1 cut(s)	322
AoxI	GGCC	1 cut(s)	99
ApeKI	GCWGC	7 cut(s)	385, 489, 498, 647, 923, 929, 932
ApoI	RAATTY	2 cut(s)	334, 405
AspLEI	GCGC	3 cut(s)	93, 390, 681
AspS9I	GGNCC	1 cut(s)	105
AsuHPI	GGTGA	1 cut(s)	326
AvaII	GGWCC	1 cut(s)	105
BalI	TGGCCA	1 cut(s)	101
BanII	GRGCYC	2 cut(s)	188, 728
BbsI	GAAGAC	1 cut(s)	552
Bbv12I	GWGCWC	1 cut(s)	77
BbvI	GCAGC	7 cut(s)	397, 476, 485, 634, 910, 916, 944
BccI	CCATC	3 cut(s)	124, 759, 936
BceAI	ACGGC	1 cut(s)	768
BciT130I	CCWGG	1 cut(s)	103
BcoDI	GTCTC	2 cut(s)	320, 769
BfaI	CTAG	1 cut(s)	981
BfmI	CTRYAG	1 cut(s)	930
BfuAI	ACCTGC	1 cut(s)	707
BisI	GCNGC	8 cut(s)	386, 490, 499, 648, 924, 927, 930, 933
BlpI	GCTNAGC	1 cut(s)	727
BlsI	GCNGC	8 cut(s)	387, 491, 500, 649, 925, 928, 931, 934
BmcAI	AGTACT	1 cut(s)	953
Bme1390I	CCNGG	1 cut(s)	103
Bme18I	GGWCC	1 cut(s)	105
BmgT120I	GGNCC	1 cut(s)	105
BmrFI	CCNGG	1 cut(s)	103
BmrI	ACTGGG	1 cut(s)	859
BmsI	GCATC	4 cut(s)	235, 639, 699, 740
BmuI	ACTGGG	1 cut(s)	859
BpiI	GAAGAC	1 cut(s)	552
BplI	GAGNNNNNCTC	2 cut(s)	989, 1021
Bpu1102I	GCTNAGC	1 cut(s)	727
BpuEI	CTTGAG	5 cut(s)	23, 61, 142, 328, 940
BsaJI	CCNNGG	1 cut(s)	86
BsaWI	WCCGGW	1 cut(s)	322
Bse118I	RCCGGY	1 cut(s)	107
Bse1I	ACTGG	1 cut(s)	854
Bse3DI	GCAATG	1 cut(s)	659
BseAI	TCCGGA	1 cut(s)	322
BseBI	CCWGG	1 cut(s)	103
BseDI	CCNNGG	1 cut(s)	86
BseGI	GGATG	4 cut(s)	298, 630, 745, 816
BseMI	GCAATG	1 cut(s)	659
BseMII	CTCAG	4 cut(s)	20, 171, 385, 741
BseNI	ACTGG	1 cut(s)	854
BseRI	GAGGAG	1 cut(s)	908
BseXI	GCAGC	7 cut(s)	397, 476, 485, 634, 910, 916, 944
BseYI	CCCAGC	1 cut(s)	140
BsgI	GTGCAG	3 cut(s)	404, 438, 633
Bsh1236I	CGCG	1 cut(s)	93
BshFI	GGCC	1 cut(s)	101
BsiHKAI	GWGCWC	1 cut(s)	77
BsiSI	CCGG	2 cut(s)	108, 323
BslFI	GGGAC	1 cut(s)	147
BsmAI	GTCTC	2 cut(s)	320, 769
BsmFI	GGGAC	1 cut(s)	147
BsnI	GGCC	1 cut(s)	101
Bsp1286I	GDGCHC	3 cut(s)	77, 188, 728
Bsp13I	TCCGGA	1 cut(s)	322
Bsp143I	GATC	2 cut(s)	261, 463
Bsp1720I	GCTNAGC	1 cut(s)	727
Bsp19I	CCATGG	1 cut(s)	86
BspACI	CCGC	2 cut(s)	737, 927
BspANI	GGCC	1 cut(s)	101
BspCNI	CTCAG	4 cut(s)	19, 172, 384, 740
BspEI	TCCGGA	1 cut(s)	322
BspFNI	CGCG	1 cut(s)	93
BspMAI	CTGCAG	1 cut(s)	934
BspMI	ACCTGC	1 cut(s)	707
BspQI	GCTCTTC	2 cut(s)	145, 550
BsrDI	GCAATG	1 cut(s)	659
BsrFI	RCCGGY	1 cut(s)	107
BsrI	ACTGG	1 cut(s)	854
BssAI	RCCGGY	1 cut(s)	107
BssECI	CCNNGG	1 cut(s)	86
BssMI	GATC	2 cut(s)	261, 463
BssNAI	GTATAC	1 cut(s)	568
BssT1I	CCWWGG	1 cut(s)	86
Bst1107I	GTATAC	1 cut(s)	568
Bst2UI	CCWGG	1 cut(s)	103
Bst4CI	ACNGT	2 cut(s)	509, 572
Bst6I	CTCTTC	2 cut(s)	145, 550
BstAPI	GCANNNNNTGC	2 cut(s)	425, 498
BstC8I	GCNNGC	2 cut(s)	255, 714
BstDEI	CTNAG	4 cut(s)	6, 180, 371, 727
BstDSI	CCRYGG	1 cut(s)	86
BstF5I	GGATG	4 cut(s)	298, 630, 745, 816
BstFNI	CGCG	1 cut(s)	93
BstHHI	GCGC	3 cut(s)	93, 390, 681
BstKTI	GATC	2 cut(s)	264, 466
BstMAI	GTCTC	2 cut(s)	320, 769
BstMBI	GATC	2 cut(s)	261, 463
BstNI	CCWGG	1 cut(s)	103
BstNSI	RCATGY	1 cut(s)	140
BstSCI	CCNGG	1 cut(s)	101
BstSFI	CTRYAG	1 cut(s)	930
BstUI	CGCG	1 cut(s)	93
BstV1I	GCAGC	7 cut(s)	397, 476, 485, 634, 910, 916, 944
BstV2I	GAAGAC	1 cut(s)	552
BstZ17I	GTATAC	1 cut(s)	568
BsuRI	GGCC	1 cut(s)	101
BtgI	CCRYGG	1 cut(s)	86
BtsCI	GGATG	4 cut(s)	298, 630, 745, 816
BtsIMutI	CAGTG	4 cut(s)	27, 379, 581, 704
BveI	ACCTGC	1 cut(s)	707
Cac8I	GCNNGC	2 cut(s)	255, 714
CaiI	CAGNNNCTG	1 cut(s)	13
CfoI	GCGC	3 cut(s)	93, 390, 681
Cfr10I	RCCGGY	1 cut(s)	107
Cfr13I	GGNCC	1 cut(s)	105
CseI	GACGC	1 cut(s)	209
Csp6I	GTAC	1 cut(s)	952
CviAII	CATG	4 cut(s)	87, 137, 391, 410
CviQI	GTAC	1 cut(s)	952
DdeI	CTNAG	4 cut(s)	6, 180, 371, 727
DpnI	GATC	2 cut(s)	263, 465
DpnII	GATC	2 cut(s)	261, 463
EaeI	YGGCCR	1 cut(s)	99
Eam1104I	CTCTTC	2 cut(s)	145, 550
EarI	CTCTTC	2 cut(s)	145, 550
Eco130I	CCWWGG	1 cut(s)	86
Eco24I	GRGCYC	2 cut(s)	188, 728
Eco47I	GGWCC	1 cut(s)	105
Eco57I	CTGAAG	2 cut(s)	51, 177
EcoRII	CCWGG	1 cut(s)	101
EcoT14I	CCWWGG	1 cut(s)	86
EcoT22I	ATGCAT	1 cut(s)	421
EcoT38I	GRGCYC	2 cut(s)	188, 728
ErhI	CCWWGG	1 cut(s)	86
FaeI	CATG	4 cut(s)	90, 140, 394, 413
FaqI	GGGAC	1 cut(s)	147
FatI	CATG	4 cut(s)	86, 136, 390, 409
FblI	GTMKAC	1 cut(s)	567
Fnu4HI	GCNGC	8 cut(s)	386, 490, 499, 648, 924, 927, 930, 933
FokI	GGATG	4 cut(s)	285, 617, 752, 823
FriOI	GRGCYC	2 cut(s)	188, 728
Fsp4HI	GCNGC	8 cut(s)	386, 490, 499, 648, 924, 927, 930, 933
FspBI	CTAG	1 cut(s)	981
FspI	TGCGCA	1 cut(s)	680
GlaI	GCGC	3 cut(s)	92, 389, 680
GluI	GCNGC	8 cut(s)	386, 490, 499, 648, 924, 927, 930, 933
GsaI	CCCAGC	1 cut(s)	144
HaeIII	GGCC	1 cut(s)	101
HapII	CCGG	2 cut(s)	108, 323
HgaI	GACGC	1 cut(s)	209
HhaI	GCGC	3 cut(s)	93, 390, 681
Hin1II	CATG	4 cut(s)	90, 140, 394, 413
Hin6I	GCGC	3 cut(s)	91, 388, 679
HinP1I	GCGC	3 cut(s)	91, 388, 679
HincII	GTYRAC	1 cut(s)	199
HindII	GTYRAC	1 cut(s)	199
HinfI	GANTC	4 cut(s)	165, 171, 827, 842
HpaII	CCGG	2 cut(s)	108, 323
HphI	GGTGA	1 cut(s)	326
Hpy166II	GTNNAC	2 cut(s)	199, 568
Hpy188I	TCNGA	4 cut(s)	170, 749, 832, 892
Hpy188III	TCNNGA	9 cut(s)	46, 78, 242, 265, 302, 323, 587, 762, 995
Hpy8I	GTNNAC	2 cut(s)	199, 568
HpyAV	CCTTC	2 cut(s)	283, 817
HpyCH4III	ACNGT	2 cut(s)	509, 572
HpyF3I	CTNAG	4 cut(s)	6, 180, 371, 727
Hsp92II	CATG	4 cut(s)	90, 140, 394, 413
HspAI	GCGC	3 cut(s)	91, 388, 679
Kpn2I	TCCGGA	1 cut(s)	322
Kzo9I	GATC	2 cut(s)	261, 463
LguI	GCTCTTC	2 cut(s)	145, 550
Lsp1109I	GCAGC	7 cut(s)	397, 476, 485, 634, 910, 916, 944
LweI	GCATC	4 cut(s)	235, 639, 699, 740
MaeI	CTAG	1 cut(s)	981
MaeIII	GTNAC	1 cut(s)	374
MalI	GATC	2 cut(s)	263, 465
MboI	GATC	2 cut(s)	261, 463
MboII	GAAGA	6 cut(s)	162, 554, 557, 567, 680, 951
MfeI	CAATTG	2 cut(s)	280, 606
MhlI	GDGCHC	3 cut(s)	77, 188, 728
MlsI	TGGCCA	1 cut(s)	101
MluCI	AATT	4 cut(s)	280, 334, 405, 606
MluNI	TGGCCA	1 cut(s)	101
MlyI	GAGTC	2 cut(s)	174, 180
MnlI	CCTC	9 cut(s)	175, 349, 358, 801, 886, 889, 954, 987, 991
Mox20I	TGGCCA	1 cut(s)	101
Mph1103I	ATGCAT	1 cut(s)	421
MroI	TCCGGA	1 cut(s)	322
MscI	TGGCCA	1 cut(s)	101
MslI	CAYNNNNRTG	1 cut(s)	414
Msp20I	TGGCCA	1 cut(s)	101
MspA1I	CMGCKG	2 cut(s)	737, 929
MspI	CCGG	2 cut(s)	108, 323
MspR9I	CCNGG	1 cut(s)	103
MunI	CAATTG	2 cut(s)	280, 606
MvaI	CCWGG	1 cut(s)	103
MvnI	CGCG	1 cut(s)	93
NcoI	CCATGG	1 cut(s)	86
NdeII	GATC	2 cut(s)	261, 463
NlaIII	CATG	4 cut(s)	90, 140, 394, 413
NmuCI	GTSAC	1 cut(s)	374
NsbI	TGCGCA	1 cut(s)	680
NsiI	ATGCAT	1 cut(s)	421
NspI	RCATGY	1 cut(s)	140
PciSI	GCTCTTC	2 cut(s)	145, 550
PfeI	GAWTC	2 cut(s)	827, 842
PkrI	GCNGC	8 cut(s)	387, 491, 500, 649, 925, 928, 931, 934
PleI	GAGTC	2 cut(s)	173, 179
PpsI	GAGTC	2 cut(s)	173, 179
Psp6I	CCWGG	1 cut(s)	101
PspFI	CCCAGC	1 cut(s)	140
PspGI	CCWGG	1 cut(s)	101
PspPI	GGNCC	1 cut(s)	105
PstI	CTGCAG	1 cut(s)	934
PstNI	CAGNNNCTG	1 cut(s)	13
RsaI	GTAC	1 cut(s)	953
RsaNI	GTAC	1 cut(s)	952
RseI	CAYNNNNRTG	1 cut(s)	414
SapI	GCTCTTC	2 cut(s)	145, 550
SatI	GCNGC	8 cut(s)	386, 490, 499, 648, 924, 927, 930, 933
Sau3AI	GATC	2 cut(s)	261, 463
Sau96I	GGNCC	1 cut(s)	105
ScaI	AGTACT	1 cut(s)	953
SchI	GAGTC	2 cut(s)	174, 180
ScrFI	CCNGG	1 cut(s)	103
SduI	GDGCHC	3 cut(s)	77, 188, 728
SfaNI	GCATC	4 cut(s)	235, 639, 699, 740
SfcI	CTRYAG	1 cut(s)	930
SinI	GGWCC	1 cut(s)	105
SmiMI	CAYNNNNRTG	1 cut(s)	414
SmlI	CTYRAG	5 cut(s)	38, 76, 121, 307, 955
SmoI	CTYRAG	5 cut(s)	38, 76, 121, 307, 955
Sse9I	AATT	4 cut(s)	280, 334, 405, 606
SsiI	CCGC	2 cut(s)	737, 927
SspMI	CTAG	1 cut(s)	981
StyD4I	CCNGG	1 cut(s)	101
StyI	CCWWGG	1 cut(s)	86
TaaI	ACNGT	2 cut(s)	509, 572
TaqI	TCGA	3 cut(s)	540, 763, 937
TasI	AATT	4 cut(s)	280, 334, 405, 606
TatI	WGTACW	1 cut(s)	951
TauI	GCSGC	1 cut(s)	929
TfiI	GAWTC	2 cut(s)	827, 842
TscAI	CASTG	4 cut(s)	34, 379, 581, 711
TseFI	GTSAC	1 cut(s)	374
TseI	GCWGC	7 cut(s)	385, 489, 498, 647, 923, 929, 932
Tsp45I	GTSAC	1 cut(s)	374
TspDTI	ATGAA	5 cut(s)	302, 337, 398, 417, 687
TspGWI	ACGGA	1 cut(s)	854
TspRI	CASTG	4 cut(s)	34, 379, 581, 711
VpaK11BI	GGWCC	1 cut(s)	105
XapI	RAATTY	2 cut(s)	334, 405
XceI	RCATGY	1 cut(s)	140
XmiI	GTMKAC	1 cut(s)	567
XspI	CTAG	1 cut(s)	981
ZrmI	AGTACT	1 cut(s)	953
Zsp2I	ATGCAT	1 cut(s)	421

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.