pycom17g20130

MAR-binding filament-like protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
Physical Location & Seq
Forward (+)
18265999 .. 18269014
3016 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g20130.3

Sequence Viewer

Length: 1653 bp
ATGATAATAAAAATAAATAAAAAAAAAAAAAAAAAGATAGGAAACAACCATGAAATGAAAAAAAAGAAAGAAAAGAAAAGCTCTGCCTCTGAGCGTTCAACACTCTATCCCTTTATCCCAACCGGTCCGGAGGCAAAGAAATCAATCAACCAAGAAACAAAAGCAACGGGCTTTCTCATGGGGAGCTCTTGCTTTTTGCACTCACCCCTCTCCCTCTCTCCTTTCCCCTCTTCTTCTTCTTCTTCCTCTCACCCCATTTTCCTGTGTTCCTCCTCCAGGAATGCAGATACCAGGAGGAGGACGACGTTGCCAATGGCGTCCCTGCGGCAGGAGGACTCAAACGACGGCGTTTGCAGCAGCAGGAGGGCTATTCTGTTTGTGGGTATTTCAGTTCTTCCATTTTTGCAGCTCAGGGGCACTGCTCTTGAAGGCTTGGCCACTAAACAAAGTGAGCTAAAGACACTGGAGGAGAGTAAAAACGCAGAGGAAGCACCTCAAACAAATGGGGCACCAAATCCCGTTTTGTCTCTCCTAAATGGCATTGGTATATTCAGTTCTGGTGTCGTCGGTGCACTCTATGTGTTGACTCAGTCAGAAAAGAAAGCCACTGATGCCATGGTCGAATCTATGAAGACCAAGCTGAAAGAAAAGGAAGCTGCTATTGTTTCACTGGGGAAGAGCTATGAATCTAAGCTACTAGGTGAACAGGAAGAACGGAGCAAGCAACTCGCAAAGGCAAAGGAAGAGCAGAATTCTCTAACAAGCCAACTGAGTTCGGCAAAAAGTACAATTGCAAGCTTAAGAAAGGAACTAAATGGTGAGAAGAAATTGATTGAGGAGCTTAAAATTCAAATTGACAGTCTTAAAACCAACCTTTCAAGGGCCGGAGAAGAAAAGGTGGTACTTGAAGAAAATTTGAAGGAAAAGCAAAACTCAATTGAAGTCTTACAGGGAAGGATTGATTTGCTCAATTCAGACATCAAGGATAAAGAAAATAATGTTCAAAGTCTTGGCTCTTCTCTTGTTGCAAAAGATATGGAGTTGAAGGACTTGAAATCTATCTACAATCAAACGAGGGATGAACTAGCCAATACACTTACAGATATTCAAAAATTGAAAGGCGAAGTCGTGAAAAATCAAAGGGAATTGGATTTGAAGAATTTATCTGTCGATGAACTGAATGCCACAGTTAGTTCTTTAATTTCTGAGATAGATGATTTGAAGAGGAAGTTTGTTGCTATTCAGGAGGAATACAATAAGCTGAAAACATCCTCCGCTAGAAAGGCAGATTTGGATTCTAAGCTTTTGGGAGAAAAGGAAGAGGAACTTCAGCAGCTAAAGGAAAAGCTTGAACTTGCTCTGAATGACACGAGTAGAAACAAAGAAGTAATTGCTGATTTGACCCGAGAGAGGGAAAACTTGAAGGAAATTCTGGATAAAGAACTGGAAAATGAAAAGAATCTGAAACATGAACTCAAGAGTACTCAGGAAGCTCTTGTAAAATCAAGAAGTGAAGCTTCCAATTTGGAAAATCAATTAAAACAGTCAAAAACTTTGTGCACGGAGCTTGAAGCTGAGATCGATCTAGGGTTCAGGCCGAGTTTGCTGGGGTCAGGGAATCGCTGCAGAGGAGCCTTGATGAGGCTAGCTTAA

Protein Analysis

551

Amino Acids

61.14

Weight (kDa)

8.87

Isoelectric Point (pI)

45.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 508
AccIII TCCGGA 1 cut(s) 127
AciI CCGC 2 cut(s) 325, 1275
AcoI YGGCCR 1 cut(s) 435
AcsI RAATTY 5 cut(s) 751, 846, 913, 1159, 1428
AcuI CTGAAG 1 cut(s) 1313
AcyI GRCGYC 1 cut(s) 317
AfaI GTAC 3 cut(s) 787, 903, 1483
AfiI CCNNNNNNNGG 7 cut(s) 276, 297, 328, 880, 1410, 1411, 1641
AflII CTTAAG 1 cut(s) 799
AgeI ACCGGT 1 cut(s) 122
AjnI CCWGG 2 cut(s) 275, 290
Alw21I GWGCWC 3 cut(s) 188, 574, 1562
Alw26I GTCTC 1 cut(s) 531
Alw44I GTGCAC 2 cut(s) 570, 1558
Ama87I CYCGRG 1 cut(s) 1404
Aor13HI TCCGGA 1 cut(s) 127
AoxI GGCC 3 cut(s) 435, 882, 1595
ApaLI GTGCAC 2 cut(s) 570, 1558
ApeKI GCWGC 6 cut(s) 354, 357, 406, 656, 1333, 1623
ApoI RAATTY 5 cut(s) 751, 846, 913, 1159, 1428
ArsI GACNNNNNNTTYG 2 cut(s) 844, 876
AsiGI ACCGGT 1 cut(s) 122
AspS9I GGNCC 2 cut(s) 125, 882
AsuHPI GGTGA 4 cut(s) 195, 242, 713, 830
AsuNHI GCTAGC 1 cut(s) 1645
AvaI CYCGRG 1 cut(s) 1404
AvaII GGWCC 1 cut(s) 125
BaeGI GKGCMC 4 cut(s) 419, 511, 574, 1562
BalI TGGCCA 1 cut(s) 437
BanI GGYRCC 1 cut(s) 508
BanII GRGCYC 1 cut(s) 188
BauI CACGAG 1 cut(s) 1369
BbsI GAAGAC 1 cut(s) 638
Bbv12I GWGCWC 3 cut(s) 188, 574, 1562
BbvI GCAGC 6 cut(s) 366, 369, 418, 643, 1345, 1610
BceAI ACGGC 1 cut(s) 361
BcgI CGANNNNNNTGC 2 cut(s) 709, 743
BciT130I CCWGG 2 cut(s) 277, 292
BcoDI GTCTC 1 cut(s) 531
BfaI CTAG 5 cut(s) 698, 1085, 1278, 1586, 1646
BfmI CTRYAG 1 cut(s) 1624
BfrI CTTAAG 1 cut(s) 799
BisI GCNGC 7 cut(s) 326, 355, 358, 407, 657, 1334, 1624
BlsI GCNGC 7 cut(s) 327, 356, 359, 408, 658, 1335, 1625
BmcAI AGTACT 1 cut(s) 1483
Bme1390I CCNGG 2 cut(s) 277, 292
Bme18I GGWCC 1 cut(s) 125
BmeT110I CYCGRG 1 cut(s) 1404
BmgT120I GGNCC 2 cut(s) 125, 882
BmiI GGNNCC 2 cut(s) 510, 1633
BmrFI CCNGG 2 cut(s) 277, 292
BmrI ACTGGG 1 cut(s) 680
BmsI GCATC 1 cut(s) 601
BmtI GCTAGC 1 cut(s) 1649
BmuI ACTGGG 1 cut(s) 680
BpiI GAAGAC 1 cut(s) 638
BpmI CTGGAG 2 cut(s) 259, 485
Bpu10I CCTNAGC 1 cut(s) 410
BpuEI CTTGAG 1 cut(s) 1460
Bsa29I ATCGAT 1 cut(s) 1581
BsaHI GRCGYC 1 cut(s) 317
BsaJI CCNNGG 1 cut(s) 615
BsaWI WCCGGW 2 cut(s) 122, 127
Bsc4I CCNNNNNNNGG 7 cut(s) 276, 297, 328, 880, 1410, 1411, 1641
Bse118I RCCGGY 1 cut(s) 122
Bse1I ACTGG 3 cut(s) 468, 675, 1449
BseAI TCCGGA 1 cut(s) 127
BseBI CCWGG 2 cut(s) 277, 292
BseCI ATCGAT 1 cut(s) 1581
BseDI CCNNGG 1 cut(s) 615
BseGI GGATG 2 cut(s) 1084, 1268
BseLI CCNNNNNNNGG 7 cut(s) 276, 297, 328, 880, 1410, 1411, 1641
BseMII CTCAG 7 cut(s) 81, 424, 602, 761, 1197, 1499, 1566
BseNI ACTGG 3 cut(s) 468, 675, 1449
BseRI GAGGAG 5 cut(s) 262, 310, 482, 851, 1644
BseSI GKGCMC 4 cut(s) 419, 511, 574, 1562
BseXI GCAGC 6 cut(s) 366, 369, 418, 643, 1345, 1610
BseYI CCCAGC 1 cut(s) 1606
BshFI GGCC 3 cut(s) 437, 884, 1597
BshNI GGYRCC 1 cut(s) 508
BshTI ACCGGT 1 cut(s) 122
BshVI ATCGAT 1 cut(s) 1581
BsiHKAI GWGCWC 3 cut(s) 188, 574, 1562
BsiHKCI CYCGRG 1 cut(s) 1404
BsiSI CCGG 3 cut(s) 123, 128, 885
BslFI GGGAC 1 cut(s) 304
BslI CCNNNNNNNGG 7 cut(s) 276, 297, 328, 880, 1410, 1411, 1641
BsmAI GTCTC 1 cut(s) 531
BsmFI GGGAC 1 cut(s) 304
BsmI GAATGC 2 cut(s) 286, 1186
BsnI GGCC 3 cut(s) 437, 884, 1597
BsoBI CYCGRG 1 cut(s) 1404
Bsp1286I GDGCHC 5 cut(s) 188, 419, 511, 574, 1562
Bsp13I TCCGGA 1 cut(s) 127
Bsp143I GATC 2 cut(s) 1578, 1582
Bsp19I CCATGG 1 cut(s) 615
BspACI CCGC 2 cut(s) 325, 1275
BspANI GGCC 3 cut(s) 437, 884, 1597
BspCNI CTCAG 7 cut(s) 82, 423, 601, 762, 1198, 1498, 1567
BspDI ATCGAT 1 cut(s) 1581
BspEI TCCGGA 1 cut(s) 127
BspLI GGNNCC 2 cut(s) 510, 1633
BspMAI CTGCAG 1 cut(s) 1628
BspOI GCTAGC 1 cut(s) 1649
BspQI GCTCTTC 3 cut(s) 671, 738, 1021
BspT107I GGYRCC 1 cut(s) 508
BspTI CTTAAG 1 cut(s) 799
BsrFI RCCGGY 1 cut(s) 122
BsrI ACTGG 3 cut(s) 468, 675, 1449
BssAI RCCGGY 1 cut(s) 122
BssECI CCNNGG 1 cut(s) 615
BssMI GATC 2 cut(s) 1578, 1582
BssNI GRCGYC 1 cut(s) 317
BssSI CACGAG 1 cut(s) 1369
BssT1I CCWWGG 1 cut(s) 615
Bst2BI CACGAG 1 cut(s) 1369
Bst2UI CCWGG 2 cut(s) 277, 292
Bst4CI ACNGT 3 cut(s) 860, 1189, 1545
Bst6I CTCTTC 6 cut(s) 235, 671, 738, 1021, 1217, 1314
BstACI GRCGYC 1 cut(s) 317
BstAFI CTTAAG 1 cut(s) 799
BstC8I GCNNGC 3 cut(s) 722, 796, 1647
BstDEI CTNAG 9 cut(s) 90, 410, 588, 690, 770, 1206, 1299, 1485, 1575
BstDSI CCRYGG 1 cut(s) 615
BstENI CCTNNNNNAGG 3 cut(s) 274, 326, 1639
BstF5I GGATG 2 cut(s) 1084, 1268
BstKTI GATC 2 cut(s) 1581, 1585
BstMAI GTCTC 1 cut(s) 531
BstMBI GATC 2 cut(s) 1578, 1582
BstMWI GCNNNNNNNGC 5 cut(s) 354, 488, 611, 1283, 1603
BstNI CCWGG 2 cut(s) 277, 292
BstSCI CCNGG 2 cut(s) 275, 290
BstSFI CTRYAG 1 cut(s) 1624
BstSLI GKGCMC 4 cut(s) 419, 511, 574, 1562
BstV1I GCAGC 6 cut(s) 366, 369, 418, 643, 1345, 1610
BstV2I GAAGAC 1 cut(s) 638
Bsu15I ATCGAT 1 cut(s) 1581
BsuRI GGCC 3 cut(s) 437, 884, 1597
BsuTUI ATCGAT 1 cut(s) 1581
BtgI CCRYGG 1 cut(s) 615
BtsCI GGATG 2 cut(s) 1084, 1268
BtsI GCAGTG 1 cut(s) 417
BtsIMutI CAGTG 4 cut(s) 417, 461, 606, 668
Cac8I GCNNGC 3 cut(s) 722, 796, 1647
Cfr10I RCCGGY 1 cut(s) 122
Cfr13I GGNCC 2 cut(s) 125, 882
ClaI ATCGAT 1 cut(s) 1581
CpoI CGGWCCG 1 cut(s) 125
CseI GACGC 1 cut(s) 306
Csp6I GTAC 3 cut(s) 786, 902, 1482
CspAI ACCGGT 1 cut(s) 122
CspI CGGWCCG 1 cut(s) 125
CviAII CATG 4 cut(s) 50, 178, 616, 1469
CviQI GTAC 3 cut(s) 786, 902, 1482
DdeI CTNAG 9 cut(s) 90, 410, 588, 690, 770, 1206, 1299, 1485, 1575
DpnI GATC 2 cut(s) 1580, 1584
DpnII GATC 2 cut(s) 1578, 1582
EaeI YGGCCR 1 cut(s) 435
Eam1104I CTCTTC 6 cut(s) 235, 671, 738, 1021, 1217, 1314
EarI CTCTTC 6 cut(s) 235, 671, 738, 1021, 1217, 1314
Ecl136II GAGCTC 1 cut(s) 186
Eco130I CCWWGG 1 cut(s) 615
Eco24I GRGCYC 1 cut(s) 188
Eco47I GGWCC 1 cut(s) 125
Eco53kI GAGCTC 1 cut(s) 186
Eco57I CTGAAG 1 cut(s) 1313
Eco88I CYCGRG 1 cut(s) 1404
EcoICRI GAGCTC 1 cut(s) 186
EcoNI CCTNNNNNAGG 3 cut(s) 274, 326, 1639
EcoRI GAATTC 1 cut(s) 751
EcoRII CCWGG 2 cut(s) 275, 290
EcoT14I CCWWGG 1 cut(s) 615
EcoT38I GRGCYC 1 cut(s) 188
ErhI CCWWGG 1 cut(s) 615
FaeI CATG 4 cut(s) 53, 181, 619, 1472
FaiI YATR 9 cut(s) 51, 179, 548, 579, 617, 629, 684, 1037, 1470
FalI AAGNNNNNCTT 4 cut(s) 1311, 1343, 1501, 1533
FaqI GGGAC 1 cut(s) 304
FatI CATG 4 cut(s) 49, 177, 615, 1468
Fnu4HI GCNGC 7 cut(s) 326, 355, 358, 407, 657, 1334, 1624
FokI GGATG 2 cut(s) 1091, 1255
FriOI GRGCYC 1 cut(s) 188
Fsp4HI GCNGC 7 cut(s) 326, 355, 358, 407, 657, 1334, 1624
FspBI CTAG 5 cut(s) 698, 1085, 1278, 1586, 1646
GluI GCNGC 7 cut(s) 326, 355, 358, 407, 657, 1334, 1624
GsaI CCCAGC 1 cut(s) 1610
GsuI CTGGAG 2 cut(s) 259, 485
HaeIII GGCC 3 cut(s) 437, 884, 1597
HapII CCGG 3 cut(s) 123, 128, 885
HgaI GACGC 1 cut(s) 306
Hin1I GRCGYC 1 cut(s) 317
Hin1II CATG 4 cut(s) 53, 181, 619, 1472
HincII GTYRAC 1 cut(s) 585
HindII GTYRAC 1 cut(s) 585
HindIII AAGCTT 4 cut(s) 796, 1301, 1346, 1515
HinfI GANTC 7 cut(s) 335, 586, 623, 686, 1295, 1459, 1618
HpaII CCGG 3 cut(s) 123, 128, 885
HphI GGTGA 4 cut(s) 195, 242, 713, 830
Hpy166II GTNNAC 4 cut(s) 572, 585, 704, 1560
Hpy188I TCNGA 6 cut(s) 91, 595, 976, 1207, 1362, 1464
Hpy188III TCNNGA 8 cut(s) 128, 425, 1129, 1244, 1433, 1477, 1487, 1506
Hpy8I GTNNAC 4 cut(s) 572, 585, 704, 1560
Hpy99I CGWCG 3 cut(s) 307, 347, 569
HpyAV CCTTC 5 cut(s) 422, 913, 948, 1039, 1417
HpyCH4III ACNGT 3 cut(s) 860, 1189, 1545
HpyCH4IV ACGT 1 cut(s) 305
HpyCH4V TGCA 9 cut(s) 199, 284, 354, 406, 572, 794, 1028, 1560, 1626
HpyF10VI GCNNNNNNNGC 5 cut(s) 354, 488, 611, 1283, 1603
HpyF3I CTNAG 9 cut(s) 90, 410, 588, 690, 770, 1206, 1299, 1485, 1575
HpySE526I ACGT 1 cut(s) 305
Hsp92I GRCGYC 1 cut(s) 317
Hsp92II CATG 4 cut(s) 53, 181, 619, 1472
Kpn2I TCCGGA 1 cut(s) 127
Kzo9I GATC 2 cut(s) 1578, 1582
LguI GCTCTTC 3 cut(s) 671, 738, 1021
LmnI GCTCC 5 cut(s) 183, 717, 838, 1564, 1631
Lsp1109I GCAGC 6 cut(s) 366, 369, 418, 643, 1345, 1610
LweI GCATC 1 cut(s) 601
MaeI CTAG 5 cut(s) 698, 1085, 1278, 1586, 1646
MaeII ACGT 1 cut(s) 305
MalI GATC 2 cut(s) 1580, 1584
MboI GATC 2 cut(s) 1578, 1582
MfeI CAATTG 2 cut(s) 789, 936
MhlI GDGCHC 5 cut(s) 188, 419, 511, 574, 1562
MlsI TGGCCA 1 cut(s) 437
MluNI TGGCCA 1 cut(s) 437
MlyI GAGTC 2 cut(s) 329, 580
Mox20I TGGCCA 1 cut(s) 437
MroI TCCGGA 1 cut(s) 127
MscI TGGCCA 1 cut(s) 437
MseI TTAA 6 cut(s) 800, 843, 864, 1199, 1538, 1651
Msp20I TGGCCA 1 cut(s) 437
MspCI CTTAAG 1 cut(s) 799
MspI CCGG 3 cut(s) 123, 128, 885
MspR9I CCNGG 2 cut(s) 277, 292
MunI CAATTG 2 cut(s) 789, 936
Mva1269I GAATGC 2 cut(s) 286, 1186
MvaI CCWGG 2 cut(s) 277, 292
MwoI GCNNNNNNNGC 5 cut(s) 354, 488, 611, 1283, 1603
NcoI CCATGG 1 cut(s) 615
NdeII GATC 2 cut(s) 1578, 1582
NheI GCTAGC 1 cut(s) 1645
NlaIII CATG 4 cut(s) 53, 181, 619, 1472
NlaIV GGNNCC 2 cut(s) 510, 1633
NmeAIII GCCGAG 1 cut(s) 1623
PciSI GCTCTTC 3 cut(s) 671, 738, 1021
PctI GAATGC 2 cut(s) 286, 1186
PfeI GAWTC 5 cut(s) 623, 686, 1295, 1459, 1618
PflFI GACNNNGTC 1 cut(s) 589
PfoI TCCNGGA 1 cut(s) 275
PinAI ACCGGT 1 cut(s) 122
PkrI GCNGC 7 cut(s) 327, 356, 359, 408, 658, 1335, 1625
PleI GAGTC 2 cut(s) 329, 580
PpsI GAGTC 2 cut(s) 329, 580
Psp124BI GAGCTC 1 cut(s) 188
Psp6I CCWGG 2 cut(s) 275, 290
PspFI CCCAGC 1 cut(s) 1606
PspGI CCWGG 2 cut(s) 275, 290
PspN4I GGNNCC 2 cut(s) 510, 1633
PspPI GGNCC 2 cut(s) 125, 882
PsrI GAACNNNNNNTAC 2 cut(s) 538, 570
PstI CTGCAG 1 cut(s) 1628
PsyI GACNNNGTC 1 cut(s) 589
RsaI GTAC 3 cut(s) 787, 903, 1483
RsaNI GTAC 3 cut(s) 786, 902, 1482
Rsr2I CGGWCCG 1 cut(s) 125
RsrII CGGWCCG 1 cut(s) 125
SacI GAGCTC 1 cut(s) 188
SapI GCTCTTC 3 cut(s) 671, 738, 1021
SaqAI TTAA 6 cut(s) 800, 843, 864, 1199, 1538, 1651
SatI GCNGC 7 cut(s) 326, 355, 358, 407, 657, 1334, 1624
Sau3AI GATC 2 cut(s) 1578, 1582
Sau96I GGNCC 2 cut(s) 125, 882
ScaI AGTACT 1 cut(s) 1483
SchI GAGTC 2 cut(s) 329, 580
ScrFI CCNGG 2 cut(s) 277, 292
SduI GDGCHC 5 cut(s) 188, 419, 511, 574, 1562
SfaNI GCATC 1 cut(s) 601
SfcI CTRYAG 1 cut(s) 1624
SinI GGWCC 1 cut(s) 125
SmlI CTYRAG 2 cut(s) 799, 1475
SmoI CTYRAG 2 cut(s) 799, 1475
SsiI CCGC 2 cut(s) 325, 1275
SspMI CTAG 5 cut(s) 698, 1085, 1278, 1586, 1646
SstI GAGCTC 1 cut(s) 188
StyD4I CCNGG 2 cut(s) 275, 290
StyI CCWWGG 1 cut(s) 615
TaaI ACNGT 3 cut(s) 860, 1189, 1545
TaiI ACGT 1 cut(s) 308
TaqI TCGA 3 cut(s) 621, 1170, 1581
TatI WGTACW 2 cut(s) 785, 1481
TauI GCSGC 1 cut(s) 328
TfiI GAWTC 5 cut(s) 623, 686, 1295, 1459, 1618
Tru1I TTAA 6 cut(s) 800, 843, 864, 1199, 1538, 1651
Tru9I TTAA 6 cut(s) 800, 843, 864, 1199, 1538, 1651
TscAI CASTG 4 cut(s) 424, 468, 613, 675
TseI GCWGC 6 cut(s) 354, 357, 406, 656, 1333, 1623
TspDTI ATGAA 8 cut(s) 66, 71, 644, 699, 1095, 1188, 1467, 1485
TspGWI ACGGA 2 cut(s) 730, 1577
TspRI CASTG 4 cut(s) 424, 468, 613, 675
Tth111I GACNNNGTC 1 cut(s) 589
Vha464I CTTAAG 1 cut(s) 799
VneI GTGCAC 2 cut(s) 570, 1558
VpaK11BI GGWCC 1 cut(s) 125
XagI CCTNNNNNAGG 3 cut(s) 274, 326, 1639
XapI RAATTY 5 cut(s) 751, 846, 913, 1159, 1428
XcmI CCANNNNNNNNNTGG 1 cut(s) 613
XspI CTAG 5 cut(s) 698, 1085, 1278, 1586, 1646
ZrmI AGTACT 1 cut(s) 1483
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.