Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0003650

Physical Location & Seq

Genomic Coordinates Forward (+)

30441584 .. 30446340

Gene Structure 4757 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00106850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGTCGTCTCTGCGCCAAGAGGACCTCAACGACGGCGATCATGGCAAGAGGAGGGCTATTCTCTTTGTGGGTATCTCAGTTCTTCCACTATTGCATCTCAGGGCTCATGCTTTTGAAGCCTGGCCCGCTAAAGAAATTGAGCCAAAGACTCCAGACAAGAACATAAAGGCAGAGGGACTGCAAGGAGATGCAGCACCAAATCCCATTTTGTCTATCCTGAATGGTATTGGTATTTTCAGCTCTGGTGTCATCGGTGCGTTTTATGGATTGGTTCAGAAAGAAAAGAAAGCCACTGATGCAATAGTAGAATCTATGAAGAAACAGCTGAAAGAAAAGGAAGCTGCTATTGCTTCATTGGAGAAGAACTTTGAATCCAAGCTACTGGATGAACAGGAAGAAAGGAGCAAGCAACTTGGAAAGGCGAAGGAAGAGCAGAGGTCTCTAACAGACCAACTAAATTCAGTAAAGAGTACTATTGTGGACCTAGGGAAGGAGCTAAATAGTGAGAAGAAGTTGATTGAGGAGCTTAAAATTCAAAGTGAAAGCCTTAAAACAAACCTTTCAAAGGCTATCGAAGATAAGGTAGAGCTTGAAGAAAGTTTGAAGGAAAAGCTCCACTCGATCGAAGATTTGCAGGGAAGGATTAATTTACTCAATTCAGAACTGAAGGTCAGAGAAAGTAATGTTCGAAGCCTTAGCTCTTCTCTCGCAGAAAAGGATTTGGAGTTGAAGGACTTAAAAACTACCTACAAGCAAACTAGGGATGAACTAGCTCATGCAGTTTCAGATATTCAACAATTAAAAGTTGAACTCCTGAAGAATCAAAAGGAATTGGAATTGAAGAGTTCCACTGTGGATGAATTGAATTCAACAGTAAGTTCTTTGTCTTCTGAGAAAGATGATTTTAAGAGGAAGCTTGATGCTATTCAGGAGGAATACAATAATCTGAAATCATCCTCTGGAAAAAAGGCAGCTTTGGATGCTAAGCTTTTGGGAGAAAAAGATGAGGCCCTTCAGCTGCTAAAGGAAAACTTGAGCTTGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0009295 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0016363 GO:0031974 GO:0031976 GO:0031981 GO:0031984 GO:0034357 GO:0034399 GO:0042646 GO:0042651 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0070013 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

348

Amino Acids

38.89

Weight (kDa)

5.66

Isoelectric Point (pI)

44.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003650)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16000
fragaria_vesca	FvH4_6g31081 FvH4_6g31081 FvH4_6g31081 FvH4_6g31081 FvH4_6g31081 FvH4_6g31081 FvH4_6g31081 FvH4_6g31081 FvH4_6g31081
malus_domestica	MD09G1212900.v1.1 MD09G1213300.v1.1 MD09G1213400.v1.1 MD09G1213500.v1.1 MD09G1213800.v1.1 MD17G1195700.v1.1
prunus_persica	Prupe.3G071700_v2.0.a1
pyrus_communis	pycom09g13050 pycom17g20130 pycom17g20140
rosa_chinensis	RchiOBHm_Chr2g0137781
rosa_laevigata	RLG00000019675
rosa_multiflora	Rmu_sc0008635.1_g000002
rosa_roxburghii	Rroxscaffold_2G00106850
rosa_rugosa	Rorug02G0345400 Rorug02G0345500 Rorug02G0345600 Rorug02G0345600 Rorug02G0345700 Rorug02G0345700
rosa_samantha	Rh2AG392700 Rh2BG400400 Rh2CG379400 Rh2DG415300
rosa_wichuraiana	Rw2G032170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	126
AcsI	RAATTY	3 cut(s)	457, 531, 865
AcuI	CTGAAG	3 cut(s)	686, 836, 998
AfaI	GTAC	1 cut(s)	472
AfiI	CCNNNNNNNGG	2 cut(s)	490, 565
AjnI	CCWGG	1 cut(s)	119
AloI	GAACNNNNNNTCC	2 cut(s)	356, 388
Alw26I	GTCTC	2 cut(s)	12, 444
AoxI	GGCC	2 cut(s)	122, 1008
ApeKI	GCWGC	4 cut(s)	191, 341, 971, 1018
ApoI	RAATTY	3 cut(s)	457, 531, 865
AseI	ATTAAT	1 cut(s)	645
AspA2I	CCTAGG	1 cut(s)	484
AspLEI	GCGC	1 cut(s)	15
AspS9I	GGNCC	4 cut(s)	22, 123, 481, 1009
AsuII	TTCGAA	1 cut(s)	688
AvaII	GGWCC	2 cut(s)	22, 481
AvrII	CCTAGG	1 cut(s)	484
BanII	GRGCYC	1 cut(s)	106
BbsI	GAAGAC	1 cut(s)	879
BbvI	GCAGC	4 cut(s)	203, 328, 983, 1005
BceAI	ACGGC	1 cut(s)	49
BciT130I	CCWGG	1 cut(s)	121
BcoDI	GTCTC	2 cut(s)	12, 444
BfaI	CTAG	3 cut(s)	485, 759, 770
BisI	GCNGC	4 cut(s)	192, 342, 972, 1019
BlnI	CCTAGG	1 cut(s)	484
BlpI	GCTNAGC	1 cut(s)	984
BlsI	GCNGC	4 cut(s)	193, 343, 973, 1020
BmcAI	AGTACT	1 cut(s)	472
Bme1390I	CCNGG	1 cut(s)	121
Bme18I	GGWCC	2 cut(s)	22, 481
BmgT120I	GGNCC	4 cut(s)	22, 123, 481, 1009
BmrFI	CCNGG	1 cut(s)	121
BmsI	GCATC	5 cut(s)	103, 178, 286, 910, 970
BpiI	GAAGAC	1 cut(s)	879
BpmI	CTGGAG	1 cut(s)	135
Bpu10I	CCTNAGC	1 cut(s)	695
Bpu1102I	GCTNAGC	1 cut(s)	984
Bpu14I	TTCGAA	1 cut(s)	688
BsaI	GGTCTC	1 cut(s)	444
BsaJI	CCNNGG	1 cut(s)	484
Bsc4I	CCNNNNNNNGG	2 cut(s)	490, 565
Bse1I	ACTGG	1 cut(s)	387
BseBI	CCWGG	1 cut(s)	121
BseDI	CCNNGG	1 cut(s)	484
BseGI	GGATG	5 cut(s)	391, 769, 862, 953, 985
BseLI	CCNNNNNNNGG	2 cut(s)	490, 565
BseMII	CTCAG	3 cut(s)	90, 112, 882
BseNI	ACTGG	1 cut(s)	387
BseRI	GAGGAG	2 cut(s)	64, 536
BseXI	GCAGC	4 cut(s)	203, 328, 983, 1005
Bsh1285I	CGRYCG	1 cut(s)	624
BshFI	GGCC	2 cut(s)	124, 1010
BsiEI	CGRYCG	1 cut(s)	624
BslFI	GGGAC	1 cut(s)	189
BslI	CCNNNNNNNGG	2 cut(s)	490, 565
BsmAI	GTCTC	2 cut(s)	12, 444
BsmBI	CGTCTC	1 cut(s)	12
BsmFI	GGGAC	1 cut(s)	189
BsnI	GGCC	2 cut(s)	124, 1010
Bso31I	GGTCTC	1 cut(s)	444
Bsp119I	TTCGAA	1 cut(s)	688
Bsp1286I	GDGCHC	1 cut(s)	106
Bsp143I	GATC	2 cut(s)	37, 621
Bsp1720I	GCTNAGC	1 cut(s)	984
BspACI	CCGC	1 cut(s)	126
BspANI	GGCC	2 cut(s)	124, 1010
BspCNI	CTCAG	3 cut(s)	89, 111, 883
BspQI	GCTCTTC	2 cut(s)	423, 706
BspT104I	TTCGAA	1 cut(s)	688
BspTNI	GGTCTC	1 cut(s)	444
BsrI	ACTGG	1 cut(s)	387
BssECI	CCNNGG	1 cut(s)	484
BssMI	GATC	2 cut(s)	37, 621
BssT1I	CCWWGG	1 cut(s)	484
Bst2UI	CCWGG	1 cut(s)	121
Bst4CI	ACNGT	2 cut(s)	853, 874
Bst6I	CTCTTC	3 cut(s)	423, 706, 836
BstBI	TTCGAA	1 cut(s)	688
BstC8I	GCNNGC	3 cut(s)	126, 407, 1040
BstDEI	CTNAG	5 cut(s)	76, 98, 695, 891, 984
BstENI	CCTNNNNNAGG	2 cut(s)	488, 563
BstF5I	GGATG	5 cut(s)	391, 769, 862, 953, 985
BstHHI	GCGC	1 cut(s)	15
BstKTI	GATC	2 cut(s)	40, 624
BstMAI	GTCTC	2 cut(s)	12, 444
BstMBI	GATC	2 cut(s)	37, 621
BstMCI	CGRYCG	1 cut(s)	624
BstMWI	GCNNNNNNNGC	6 cut(s)	42, 116, 125, 296, 347, 980
BstNI	CCWGG	1 cut(s)	121
BstSCI	CCNGG	1 cut(s)	119
BstV1I	GCAGC	4 cut(s)	203, 328, 983, 1005
BstV2I	GAAGAC	1 cut(s)	879
BstXI	CCANNNNNNTGG	1 cut(s)	382
BsuRI	GGCC	2 cut(s)	124, 1010
BtsCI	GGATG	5 cut(s)	391, 769, 862, 953, 985
BtsIMutI	CAGTG	2 cut(s)	291, 849
Cac8I	GCNNGC	3 cut(s)	126, 407, 1040
CfoI	GCGC	1 cut(s)	15
Cfr13I	GGNCC	4 cut(s)	22, 123, 481, 1009
Csp6I	GTAC	1 cut(s)	471
CviAII	CATG	3 cut(s)	41, 107, 776
CviQI	GTAC	1 cut(s)	471
DdeI	CTNAG	5 cut(s)	76, 98, 695, 891, 984
DpnI	GATC	2 cut(s)	39, 623
DpnII	GATC	2 cut(s)	37, 621
Eam1104I	CTCTTC	3 cut(s)	423, 706, 836
EarI	CTCTTC	3 cut(s)	423, 706, 836
Eco130I	CCWWGG	1 cut(s)	484
Eco24I	GRGCYC	1 cut(s)	106
Eco31I	GGTCTC	1 cut(s)	444
Eco47I	GGWCC	2 cut(s)	22, 481
Eco57I	CTGAAG	3 cut(s)	686, 836, 998
EcoNI	CCTNNNNNAGG	2 cut(s)	488, 563
EcoO109I	RGGNCCY	2 cut(s)	22, 1009
EcoRI	GAATTC	1 cut(s)	865
EcoRII	CCWGG	1 cut(s)	119
EcoT14I	CCWWGG	1 cut(s)	484
EcoT38I	GRGCYC	1 cut(s)	106
ErhI	CCWWGG	1 cut(s)	484
Esp3I	CGTCTC	1 cut(s)	12
FaeI	CATG	3 cut(s)	44, 110, 779
FaiI	YATR	6 cut(s)	42, 108, 164, 264, 314, 777
FalI	AAGNNNNNCTT	1 cut(s)	1016
FaqI	GGGAC	1 cut(s)	189
FatI	CATG	3 cut(s)	40, 106, 775
FauI	CCCGC	1 cut(s)	133
Fnu4HI	GCNGC	4 cut(s)	192, 342, 972, 1019
FokI	GGATG	5 cut(s)	398, 776, 869, 940, 992
FriOI	GRGCYC	1 cut(s)	106
Fsp4HI	GCNGC	4 cut(s)	192, 342, 972, 1019
FspBI	CTAG	3 cut(s)	485, 759, 770
GlaI	GCGC	1 cut(s)	14
GluI	GCNGC	4 cut(s)	192, 342, 972, 1019
GsuI	CTGGAG	1 cut(s)	135
HaeIII	GGCC	2 cut(s)	124, 1010
HhaI	GCGC	1 cut(s)	15
Hin1II	CATG	3 cut(s)	44, 110, 779
Hin6I	GCGC	1 cut(s)	13
HinP1I	GCGC	1 cut(s)	13
HindIII	AAGCTT	2 cut(s)	914, 986
HinfI	GANTC	4 cut(s)	148, 308, 371, 820
Hpy166II	GTNNAC	1 cut(s)	481
Hpy188I	TCNGA	6 cut(s)	276, 661, 674, 787, 892, 948
Hpy188III	TCNNGA	5 cut(s)	152, 217, 814, 929, 960
Hpy8I	GTNNAC	1 cut(s)	481
Hpy99I	CGWCG	1 cut(s)	35
HpyAV	CCTTC	7 cut(s)	418, 484, 598, 633, 661, 724, 1022
HpyCH4III	ACNGT	2 cut(s)	853, 874
HpyCH4V	TGCA	7 cut(s)	94, 181, 191, 299, 634, 779, 1042
HpyF10VI	GCNNNNNNNGC	6 cut(s)	42, 116, 125, 296, 347, 980
HpyF3I	CTNAG	5 cut(s)	76, 98, 695, 891, 984
Hsp92II	CATG	3 cut(s)	44, 110, 779
HspAI	GCGC	1 cut(s)	13
Kzo9I	GATC	2 cut(s)	37, 621
LguI	GCTCTTC	2 cut(s)	423, 706
LmnI	GCTCC	4 cut(s)	402, 493, 523, 618
Lsp1109I	GCAGC	4 cut(s)	203, 328, 983, 1005
LweI	GCATC	5 cut(s)	103, 178, 286, 910, 970
MaeI	CTAG	3 cut(s)	485, 759, 770
MalI	GATC	2 cut(s)	39, 623
MboI	GATC	2 cut(s)	37, 621
MhlI	GDGCHC	1 cut(s)	106
MlyI	GAGTC	1 cut(s)	142
MseI	TTAA	6 cut(s)	528, 549, 645, 737, 800, 906
MspA1I	CMGCKG	2 cut(s)	325, 1018
MspR9I	CCNGG	1 cut(s)	121
MvaI	CCWGG	1 cut(s)	121
MwoI	GCNNNNNNNGC	6 cut(s)	42, 116, 125, 296, 347, 980
NdeII	GATC	2 cut(s)	37, 621
NlaIII	CATG	3 cut(s)	44, 110, 779
NspV	TTCGAA	1 cut(s)	688
PciSI	GCTCTTC	2 cut(s)	423, 706
PfeI	GAWTC	3 cut(s)	308, 371, 820
PkrI	GCNGC	4 cut(s)	193, 343, 973, 1020
Ple19I	CGATCG	1 cut(s)	624
PleI	GAGTC	1 cut(s)	142
PpsI	GAGTC	1 cut(s)	142
PpuMI	RGGWCCY	1 cut(s)	22
PshBI	ATTAAT	1 cut(s)	645
Psp5II	RGGWCCY	1 cut(s)	22
Psp6I	CCWGG	1 cut(s)	119
PspGI	CCWGG	1 cut(s)	119
PspPI	GGNCC	4 cut(s)	22, 123, 481, 1009
PspPPI	RGGWCCY	1 cut(s)	22
PvuI	CGATCG	1 cut(s)	624
PvuII	CAGCTG	2 cut(s)	325, 1018
RsaI	GTAC	1 cut(s)	472
RsaNI	GTAC	1 cut(s)	471
SapI	GCTCTTC	2 cut(s)	423, 706
SaqAI	TTAA	6 cut(s)	528, 549, 645, 737, 800, 906
SatI	GCNGC	4 cut(s)	192, 342, 972, 1019
Sau3AI	GATC	2 cut(s)	37, 621
Sau96I	GGNCC	4 cut(s)	22, 123, 481, 1009
ScaI	AGTACT	1 cut(s)	472
SchI	GAGTC	1 cut(s)	142
ScrFI	CCNGG	1 cut(s)	121
SduI	GDGCHC	1 cut(s)	106
SfaNI	GCATC	5 cut(s)	103, 178, 286, 910, 970
SfuI	TTCGAA	1 cut(s)	688
SinI	GGWCC	2 cut(s)	22, 481
SmlI	CTYRAG	1 cut(s)	1033
SmoI	CTYRAG	1 cut(s)	1033
SsiI	CCGC	1 cut(s)	126
SspMI	CTAG	3 cut(s)	485, 759, 770
StyD4I	CCNGG	1 cut(s)	119
StyI	CCWWGG	1 cut(s)	484
TaaI	ACNGT	2 cut(s)	853, 874
TaqI	TCGA	4 cut(s)	573, 620, 624, 688
TatI	WGTACW	1 cut(s)	470
TfiI	GAWTC	3 cut(s)	308, 371, 820
Tru1I	TTAA	6 cut(s)	528, 549, 645, 737, 800, 906
Tru9I	TTAA	6 cut(s)	528, 549, 645, 737, 800, 906
TscAI	CASTG	2 cut(s)	298, 856
TseI	GCWGC	4 cut(s)	191, 341, 971, 1018
TspDTI	ATGAA	5 cut(s)	329, 342, 402, 780, 873
TspRI	CASTG	2 cut(s)	298, 856
VpaK11BI	GGWCC	2 cut(s)	22, 481
VspI	ATTAAT	1 cut(s)	645
XagI	CCTNNNNNAGG	2 cut(s)	488, 563
XapI	RAATTY	3 cut(s)	457, 531, 865
XmaJI	CCTAGG	1 cut(s)	484
XspI	CTAG	3 cut(s)	485, 759, 770
ZrmI	AGTACT	1 cut(s)	472

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.