Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0003650

Physical Location & Seq

Genomic Coordinates Reverse (-)

43085836 .. 43087445

Gene Structure 1610 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0345400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGCTGGCTATTCCAATATTGTCTGGTCTACTGGTGCCGGTACTAATCCCTGTGTTTGGCTGTTGGTGGCTTAAGAAAAGGAGGAAAACAAAAGGCATAGAACTGTTTGTCTTTTCTAGTTCAGGCAAAGGTGGAATGGTTGATGAACTTGGAAAAGCTAGGAAACACCTTGATATGCAATTTTTCTCTCTGAGCACAATAATTGTAGCCACAGACAACTTCCATTTTGGAAATAAGCTCGGGGAAGGTGGTTTTGGATCTGTTTATAAGAGTCAGTTACCATATGGAAAGGAGATTGCTGTGAAAAGATTATCCAAAACTTCAGGGCAAGGGATTGAAGAATTCAAGAATGAAGTTGTGCTTATAGAAAGACTTCAACATAGGAACCTTGTGAAACTTTTGGGTTGTTGCATAGGGGGAGAAGAAACGATGTTGGTCCTTGAATACTTGTCGAACAAAAGCTTGGACTACTTCTTTCTTTTTGATCACACAAGAAGGTCCTTCTTGGATTGGAAAAAGCGCTTTGAAATCATCAATGGGATTGCTCGTGGGATTCTTTATCTTCACCCGGACTCGAGAGTTAAAATTATCCATAGGGATCTAAAAACCAACAATATTCTTCTGGATGCTGAGCTGAACCCAAAAATTTCAGATTTTGGCATGGCAAGAATAATTTATGGGGACCAATTGCAGGATAAGACAGCCAGAGTTGTTGGAACATATGGGTATATGTCACCAGAGTATGCAGTTTTTGGAAGATATTCAACAAAAGTCGGATGTCTTCAGCTTCAGGATCATGATATTGGAGATCATAAGCAGCAAGAAAAACTCTGGTTCTTATCGGGAAGATCATTCCATAAACTTGACAGGAAAGGTTTGGCAGATGTGGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0009295 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0016363 GO:0031974 GO:0031976 GO:0031981 GO:0031984 GO:0034357 GO:0034399 GO:0042646 GO:0042651 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0070013 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

297

Amino Acids

33.78

Weight (kDa)

9.39

Isoelectric Point (pI)

44.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	74 - 257	7.6e-36	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	75 - 257	3e-35	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003650)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16000
fragaria_vesca	FvH4_6g31081 FvH4_6g31081 FvH4_6g31081 FvH4_6g31081 FvH4_6g31081 FvH4_6g31081 FvH4_6g31081 FvH4_6g31081 FvH4_6g31081
malus_domestica	MD09G1212900.v1.1 MD09G1213300.v1.1 MD09G1213400.v1.1 MD09G1213500.v1.1 MD09G1213800.v1.1 MD17G1195700.v1.1
prunus_persica	Prupe.3G071700_v2.0.a1
pyrus_communis	pycom09g13050 pycom17g20130 pycom17g20140
rosa_chinensis	RchiOBHm_Chr2g0137781
rosa_laevigata	RLG00000019675
rosa_multiflora	Rmu_sc0008635.1_g000002
rosa_roxburghii	Rroxscaffold_2G00106850
rosa_rugosa	Rorug02G0345400 Rorug02G0345500 Rorug02G0345600 Rorug02G0345600 Rorug02G0345700 Rorug02G0345700
rosa_samantha	Rh2AG392700 Rh2BG400400 Rh2CG379400 Rh2DG415300
rosa_wichuraiana	Rw2G032170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	267
AccB1I	GGYRCC	1 cut(s)	34
AccI	GTMKAC	1 cut(s)	28
AclWI	GGATC	3 cut(s)	265, 606, 801
AcsI	RAATTY	2 cut(s)	341, 645
AcuI	CTGAAG	3 cut(s)	306, 767, 773
AfaI	GTAC	1 cut(s)	42
AfeI	AGCGCT	1 cut(s)	521
AfiI	CCNNNNNNNGG	2 cut(s)	56, 691
AflII	CTTAAG	1 cut(s)	71
AgsI	TTSAA	6 cut(s)	338, 346, 377, 443, 527, 765
AjuI	GAANNNNNNNTTGG	4 cut(s)	237, 269, 446, 478
AluBI	AGCT	5 cut(s)	158, 238, 462, 634, 787
AluI	AGCT	5 cut(s)	158, 238, 462, 634, 787
Alw21I	GWGCWC	1 cut(s)	197
AlwI	GGATC	3 cut(s)	265, 606, 801
Ama87I	CYCGRG	2 cut(s)	239, 574
Aor51HI	AGCGCT	1 cut(s)	521
ApeKI	GCWGC	1 cut(s)	817
ApoI	RAATTY	2 cut(s)	341, 645
Asp700I	GAANNNNTTC	2 cut(s)	372, 760
AspLEI	GCGC	1 cut(s)	522
AspS9I	GGNCC	3 cut(s)	436, 498, 682
AsuC2I	CCSGG	1 cut(s)	569
AsuHPI	GGTGA	2 cut(s)	557, 726
AvaI	CYCGRG	2 cut(s)	239, 574
AvaII	GGWCC	3 cut(s)	436, 498, 682
BanI	GGYRCC	1 cut(s)	34
BauI	CACGAG	1 cut(s)	546
BbsI	GAAGAC	1 cut(s)	773
Bbv12I	GWGCWC	1 cut(s)	197
BbvI	GCAGC	1 cut(s)	829
BclI	TGATCA	1 cut(s)	484
BcnI	CCSGG	1 cut(s)	569
BfaI	CTAG	2 cut(s)	117, 159
BfoI	RGCGCY	1 cut(s)	523
BfrI	CTTAAG	1 cut(s)	71
BisI	GCNGC	1 cut(s)	818
BlpI	GCTNAGC	1 cut(s)	630
BlsI	GCNGC	1 cut(s)	819
Bme1390I	CCNGG	1 cut(s)	569
Bme18I	GGWCC	3 cut(s)	436, 498, 682
BmeT110I	CYCGRG	2 cut(s)	239, 574
BmgT120I	GGNCC	3 cut(s)	436, 498, 682
BmiI	GGNNCC	3 cut(s)	36, 386, 683
BmrFI	CCNGG	1 cut(s)	569
BmsI	GCATC	1 cut(s)	616
BpiI	GAAGAC	1 cut(s)	773
Bpu1102I	GCTNAGC	1 cut(s)	630
BpuMI	CCSGG	1 cut(s)	569
Bsc4I	CCNNNNNNNGG	2 cut(s)	56, 691
Bse118I	RCCGGY	1 cut(s)	37
Bse1I	ACTGG	1 cut(s)	36
BseGI	GGATG	2 cut(s)	631, 782
BseLI	CCNNNNNNNGG	2 cut(s)	56, 691
BseMII	CTCAG	2 cut(s)	182, 621
BseNI	ACTGG	1 cut(s)	36
BseXI	GCAGC	1 cut(s)	829
BshNI	GGYRCC	1 cut(s)	34
BsiHKAI	GWGCWC	1 cut(s)	197
BsiHKCI	CYCGRG	2 cut(s)	239, 574
BsiSI	CCGG	2 cut(s)	38, 569
BslFI	GGGAC	1 cut(s)	695
BslI	CCNNNNNNNGG	2 cut(s)	56, 691
BsmFI	GGGAC	1 cut(s)	695
BsoBI	CYCGRG	2 cut(s)	239, 574
Bsp1286I	GDGCHC	1 cut(s)	197
Bsp143I	GATC	6 cut(s)	257, 484, 598, 793, 808, 848
Bsp1720I	GCTNAGC	1 cut(s)	630
BspCNI	CTCAG	2 cut(s)	183, 622
BspHI	TCATGA	1 cut(s)	796
BspLI	GGNNCC	3 cut(s)	36, 386, 683
BspPI	GGATC	3 cut(s)	265, 606, 801
BspT107I	GGYRCC	1 cut(s)	34
BspTI	CTTAAG	1 cut(s)	71
BsrFI	RCCGGY	1 cut(s)	37
BsrI	ACTGG	1 cut(s)	36
BssAI	RCCGGY	1 cut(s)	37
BssMI	GATC	6 cut(s)	257, 484, 598, 793, 808, 848
BssSI	CACGAG	1 cut(s)	546
Bst2BI	CACGAG	1 cut(s)	546
Bst4CI	ACNGT	1 cut(s)	105
BstAFI	CTTAAG	1 cut(s)	71
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	2 cut(s)	191, 630
BstF5I	GGATG	2 cut(s)	631, 782
BstH2I	RGCGCY	1 cut(s)	523
BstHHI	GCGC	1 cut(s)	522
BstKTI	GATC	6 cut(s)	260, 487, 601, 796, 811, 851
BstMBI	GATC	6 cut(s)	257, 484, 598, 793, 808, 848
BstSCI	CCNGG	1 cut(s)	567
BstV1I	GCAGC	1 cut(s)	829
BstV2I	GAAGAC	1 cut(s)	773
BstX2I	RGATCY	2 cut(s)	257, 598
BstYI	RGATCY	2 cut(s)	257, 598
BtsCI	GGATG	2 cut(s)	631, 782
Cac8I	GCNNGC	1 cut(s)	6
CciI	TCATGA	1 cut(s)	796
CfoI	GCGC	1 cut(s)	522
Cfr10I	RCCGGY	1 cut(s)	37
Cfr13I	GGNCC	3 cut(s)	436, 498, 682
Csp6I	GTAC	1 cut(s)	41
CviAII	CATG	2 cut(s)	661, 797
CviQI	GTAC	1 cut(s)	41
DdeI	CTNAG	2 cut(s)	191, 630
DpnI	GATC	6 cut(s)	259, 486, 600, 795, 810, 850
DpnII	GATC	6 cut(s)	257, 484, 598, 793, 808, 848
Eco47I	GGWCC	3 cut(s)	436, 498, 682
Eco47III	AGCGCT	1 cut(s)	521
Eco57I	CTGAAG	3 cut(s)	306, 767, 773
Eco88I	CYCGRG	2 cut(s)	239, 574
EcoO109I	RGGNCCY	1 cut(s)	498
EcoRI	GAATTC	1 cut(s)	341
FaeI	CATG	2 cut(s)	664, 800
FalI	AAGNNNNNCTT	2 cut(s)	345, 377
FaqI	GGGAC	1 cut(s)	695
FatI	CATG	2 cut(s)	660, 796
FauNDI	CATATG	2 cut(s)	283, 721
FbaI	TGATCA	1 cut(s)	484
FblI	GTMKAC	1 cut(s)	28
Fnu4HI	GCNGC	1 cut(s)	818
FokI	GGATG	2 cut(s)	638, 789
Fsp4HI	GCNGC	1 cut(s)	818
FspBI	CTAG	2 cut(s)	117, 159
GlaI	GCGC	1 cut(s)	521
GluI	GCNGC	1 cut(s)	818
HaeII	RGCGCY	1 cut(s)	523
HapII	CCGG	2 cut(s)	38, 569
HhaI	GCGC	1 cut(s)	522
Hin1II	CATG	2 cut(s)	664, 800
Hin6I	GCGC	1 cut(s)	520
HinP1I	GCGC	1 cut(s)	520
HindIII	AAGCTT	1 cut(s)	460
HinfI	GANTC	3 cut(s)	271, 553, 572
HpaII	CCGG	2 cut(s)	38, 569
HphI	GGTGA	2 cut(s)	557, 726
Hpy166II	GTNNAC	1 cut(s)	29
Hpy188I	TCNGA	3 cut(s)	192, 652, 776
Hpy188III	TCNNGA	6 cut(s)	346, 576, 623, 791, 797, 843
Hpy8I	GTNNAC	1 cut(s)	29
HpyAV	CCTTC	3 cut(s)	239, 489, 511
HpyCH4III	ACNGT	1 cut(s)	105
HpyCH4V	TGCA	4 cut(s)	178, 411, 691, 746
HpyF3I	CTNAG	2 cut(s)	191, 630
Hsp92II	CATG	2 cut(s)	664, 800
HspAI	GCGC	1 cut(s)	520
Ksp22I	TGATCA	1 cut(s)	484
Kzo9I	GATC	6 cut(s)	257, 484, 598, 793, 808, 848
Lsp1109I	GCAGC	1 cut(s)	829
LweI	GCATC	1 cut(s)	616
MaeI	CTAG	2 cut(s)	117, 159
MaeIII	GTNAC	2 cut(s)	276, 732
MalI	GATC	6 cut(s)	259, 486, 600, 795, 810, 850
MboI	GATC	6 cut(s)	257, 484, 598, 793, 808, 848
MboII	GAAGA	7 cut(s)	350, 434, 554, 611, 768, 773, 858
MfeI	CAATTG	1 cut(s)	686
MflI	RGATCY	2 cut(s)	257, 598
MhlI	GDGCHC	1 cut(s)	197
MluCI	AATT	7 cut(s)	179, 201, 341, 585, 645, 672, 686
MlyI	GAGTC	2 cut(s)	280, 566
MmeI	TCCRAC	2 cut(s)	694, 754
MnlI	CCTC	1 cut(s)	75
MroXI	GAANNNNTTC	2 cut(s)	372, 760
MseI	TTAA	2 cut(s)	72, 582
MspCI	CTTAAG	1 cut(s)	71
MspI	CCGG	2 cut(s)	38, 569
MspR9I	CCNGG	1 cut(s)	569
MunI	CAATTG	1 cut(s)	686
NciI	CCSGG	1 cut(s)	569
NdeI	CATATG	2 cut(s)	283, 721
NdeII	GATC	6 cut(s)	257, 484, 598, 793, 808, 848
NlaIII	CATG	2 cut(s)	664, 800
NlaIV	GGNNCC	3 cut(s)	36, 386, 683
NmuCI	GTSAC	1 cut(s)	732
PaeR7I	CTCGAG	1 cut(s)	574
PagI	TCATGA	1 cut(s)	796
PdmI	GAANNNNTTC	2 cut(s)	372, 760
PfeI	GAWTC	1 cut(s)	553
PkrI	GCNGC	1 cut(s)	819
PleI	GAGTC	2 cut(s)	279, 566
PpsI	GAGTC	2 cut(s)	279, 566
PpuMI	RGGWCCY	1 cut(s)	498
PsiI	TTATAA	1 cut(s)	267
Psp5II	RGGWCCY	1 cut(s)	498
PspN4I	GGNNCC	3 cut(s)	36, 386, 683
PspPI	GGNCC	3 cut(s)	436, 498, 682
PspPPI	RGGWCCY	1 cut(s)	498
PsuI	RGATCY	2 cut(s)	257, 598
RsaI	GTAC	1 cut(s)	42
RsaNI	GTAC	1 cut(s)	41
SaqAI	TTAA	2 cut(s)	72, 582
SatI	GCNGC	1 cut(s)	818
Sau3AI	GATC	6 cut(s)	257, 484, 598, 793, 808, 848
Sau96I	GGNCC	3 cut(s)	436, 498, 682
SchI	GAGTC	2 cut(s)	280, 566
ScrFI	CCNGG	1 cut(s)	569
SduI	GDGCHC	1 cut(s)	197
SfaNI	GCATC	1 cut(s)	616
Sfr274I	CTCGAG	1 cut(s)	574
SinI	GGWCC	3 cut(s)	436, 498, 682
SlaI	CTCGAG	1 cut(s)	574
SmlI	CTYRAG	2 cut(s)	71, 574
SmoI	CTYRAG	2 cut(s)	71, 574
Sse9I	AATT	7 cut(s)	179, 201, 341, 585, 645, 672, 686
SspI	AATATT	2 cut(s)	18, 616
SspMI	CTAG	2 cut(s)	117, 159
StyD4I	CCNGG	1 cut(s)	567
TaaI	ACNGT	1 cut(s)	105
TaqI	TCGA	2 cut(s)	452, 575
TasI	AATT	7 cut(s)	179, 201, 341, 585, 645, 672, 686
TfiI	GAWTC	1 cut(s)	553
Tru1I	TTAA	2 cut(s)	72, 582
Tru9I	TTAA	2 cut(s)	72, 582
TseFI	GTSAC	1 cut(s)	732
TseI	GCWGC	1 cut(s)	817
Tsp45I	GTSAC	1 cut(s)	732
TspDTI	ATGAA	2 cut(s)	159, 366
Vha464I	CTTAAG	1 cut(s)	71
VpaK11BI	GGWCC	3 cut(s)	436, 498, 682
XapI	RAATTY	2 cut(s)	341, 645
XhoI	CTCGAG	1 cut(s)	574
XmiI	GTMKAC	1 cut(s)	28
XmnI	GAANNNNTTC	2 cut(s)	372, 760
XspI	CTAG	2 cut(s)	117, 159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.