FvH4_6g36931

F-box-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0004624
Physical Location & Seq
Reverse (-)
28988739 .. 28992371
3633 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g36931.t1

Sequence Viewer

Length: 711 bp
ATGGAAAATAGTAAAGAAAATGATACCTTAGCATCATGTGATAGTTCATTTGGAAAGCTTCCTGATCATCTCCTGATCGAAATCTTCATCCGGGTTCCCGTCTCAGAATGGGTACAAATATGCTGTGTAAGAAAACAGTGGGCCAATCTGTTTCGTGGAGAATGCTTGTGGCAAGCTGCTCTTTCTATGACATTTCCTTTGGCTAGCAAAGCTAAAAGTTGGCCCGGACCTATCCCTCGAGGTTTGAGCAAGAGGAGATTTGCTGCTTTATATGTCAGTCAGCACATTTTTGCTCTAGATGGTGAGATGGATGAGATAGTGGGGCATACTTATTTGTTTCTAAAAGAGCAGCTTGAGCTTTCATCTATGCCACCACCATCTGGTATTCTGCATGGAACCATGATAGATCAGTTTATCGCTTGTGGTAAATCGAGAGATATGGCTCATGAGCTTGCTTCCCAGATATGGTTGGCTGTTCTCGACAATTTAGAGGAAACCGAGCACACTTTTCAAATACTTAAACGTCTTGCACAAGAGGGGGATGTTTTTCTTCCATATCCATACTCAAGATCAATCAAAGTCCAATGGAAGGTGTTTGAAAAGCTTTTCACTGATTTTCGTGACTGCCTCAACTATGTGGATTACTATGATGTCTTGGCTTGTGCAAAGAACAAGTTTCAGCCAATACCATCCATTTGGTTAGGTCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

237

Amino Acids

27.12

Weight (kDa)

5.98

Isoelectric Point (pI)

48.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 237
AccB7I CCANNNNNTGG 1 cut(s) 380
AfaI GTAC 1 cut(s) 114
AfiI CCNNNNNNNGG 3 cut(s) 380, 465, 589
AgsI TTSAA 2 cut(s) 512, 599
AluBI AGCT 7 cut(s) 58, 176, 212, 352, 358, 451, 604
AluI AGCT 7 cut(s) 58, 176, 212, 352, 358, 451, 604
Alw21I GWGCWC 1 cut(s) 504
Alw26I GTCTC 1 cut(s) 106
Ama87I CYCGRG 1 cut(s) 237
AoxI GGCC 2 cut(s) 141, 221
ApeKI GCWGC 3 cut(s) 176, 263, 349
ArsI GACNNNNNNTTYG 2 cut(s) 181, 213
AspS9I GGNCC 3 cut(s) 141, 222, 227
AsuC2I CCSGG 2 cut(s) 92, 225
AsuHPI GGTGA 1 cut(s) 314
AsuNHI GCTAGC 1 cut(s) 203
AvaI CYCGRG 1 cut(s) 237
AvaII GGWCC 1 cut(s) 227
Bbv12I GWGCWC 1 cut(s) 504
BbvI GCAGC 3 cut(s) 163, 250, 361
BccI CCATC 4 cut(s) 293, 301, 385, 697
BclI TGATCA 1 cut(s) 64
BcnI CCSGG 2 cut(s) 92, 225
BcoDI GTCTC 1 cut(s) 106
BfaI CTAG 3 cut(s) 204, 296, 709
BisI GCNGC 3 cut(s) 177, 264, 350
BlsI GCNGC 3 cut(s) 178, 265, 351
Bme1390I CCNGG 2 cut(s) 92, 225
Bme18I GGWCC 1 cut(s) 227
BmeT110I CYCGRG 1 cut(s) 237
BmgT120I GGNCC 3 cut(s) 141, 222, 227
BmiI GGNNCC 2 cut(s) 96, 397
BmrFI CCNGG 2 cut(s) 92, 225
BmsI GCATC 1 cut(s) 41
BmtI GCTAGC 1 cut(s) 207
Bpu10I CCTNAGC 1 cut(s) 28
BpuEI CTTGAG 2 cut(s) 374, 550
BpuMI CCSGG 2 cut(s) 92, 225
BsaBI GATNNNNATC 1 cut(s) 80
Bsc4I CCNNNNNNNGG 3 cut(s) 380, 465, 589
Bse8I GATNNNNATC 1 cut(s) 80
BseGI GGATG 4 cut(s) 87, 316, 547, 689
BseJI GATNNNNATC 1 cut(s) 80
BseLI CCNNNNNNNGG 3 cut(s) 380, 465, 589
BseMII CTCAG 1 cut(s) 117
BseRI GAGGAG 1 cut(s) 268
BseXI GCAGC 3 cut(s) 163, 250, 361
BshFI GGCC 2 cut(s) 143, 223
BsiHKAI GWGCWC 1 cut(s) 504
BsiHKCI CYCGRG 1 cut(s) 237
BsiSI CCGG 2 cut(s) 91, 225
BslI CCNNNNNNNGG 3 cut(s) 380, 465, 589
BsmAI GTCTC 1 cut(s) 106
BsmBI CGTCTC 1 cut(s) 106
BsmI GAATGC 1 cut(s) 167
BsnI GGCC 2 cut(s) 143, 223
BsoBI CYCGRG 1 cut(s) 237
Bsp1286I GDGCHC 1 cut(s) 504
Bsp143I GATC 4 cut(s) 64, 75, 406, 569
BspANI GGCC 2 cut(s) 143, 223
BspCNI CTCAG 1 cut(s) 116
BspHI TCATGA 1 cut(s) 445
BspLI GGNNCC 2 cut(s) 96, 397
BspOI GCTAGC 1 cut(s) 207
BssMI GATC 4 cut(s) 64, 75, 406, 569
Bst4CI ACNGT 1 cut(s) 138
BstC8I GCNNGC 3 cut(s) 174, 205, 453
BstDEI CTNAG 2 cut(s) 28, 103
BstF5I GGATG 4 cut(s) 87, 316, 547, 689
BstKTI GATC 4 cut(s) 67, 78, 409, 572
BstMAI GTCTC 1 cut(s) 106
BstMBI GATC 4 cut(s) 64, 75, 406, 569
BstMWI GCNNNNNNNGC 2 cut(s) 209, 355
BstSCI CCNGG 2 cut(s) 90, 223
BstV1I GCAGC 3 cut(s) 163, 250, 361
BstXI CCANNNNNNTGG 1 cut(s) 696
BsuRI GGCC 2 cut(s) 143, 223
BtsCI GGATG 4 cut(s) 87, 316, 547, 689
BtsIMutI CAGTG 2 cut(s) 143, 609
Cac8I GCNNGC 3 cut(s) 174, 205, 453
CciI TCATGA 1 cut(s) 445
Cfr13I GGNCC 3 cut(s) 141, 222, 227
Csp6I GTAC 1 cut(s) 113
CviAII CATG 4 cut(s) 36, 392, 400, 446
CviQI GTAC 1 cut(s) 113
DdeI CTNAG 2 cut(s) 28, 103
DpnI GATC 4 cut(s) 66, 77, 408, 571
DpnII GATC 4 cut(s) 64, 75, 406, 569
Eco47I GGWCC 1 cut(s) 227
Eco88I CYCGRG 1 cut(s) 237
Esp3I CGTCTC 1 cut(s) 106
FaeI CATG 4 cut(s) 39, 395, 403, 449
FalI AAGNNNNNCTT 4 cut(s) 165, 197, 336, 368
FatI CATG 4 cut(s) 35, 391, 399, 445
FbaI TGATCA 1 cut(s) 64
Fnu4HI GCNGC 3 cut(s) 177, 264, 350
FokI GGATG 4 cut(s) 74, 323, 554, 676
Fsp4HI GCNGC 3 cut(s) 177, 264, 350
FspBI CTAG 3 cut(s) 204, 296, 709
GluI GCNGC 3 cut(s) 177, 264, 350
HaeIII GGCC 2 cut(s) 143, 223
HapII CCGG 2 cut(s) 91, 225
Hin1II CATG 4 cut(s) 39, 395, 403, 449
HindIII AAGCTT 2 cut(s) 56, 602
HpaII CCGG 2 cut(s) 91, 225
HphI GGTGA 1 cut(s) 314
Hpy188I TCNGA 1 cut(s) 106
Hpy188III TCNNGA 8 cut(s) 62, 73, 296, 432, 446, 479, 567, 620
HpyAV CCTTC 1 cut(s) 583
HpyCH4III ACNGT 1 cut(s) 138
HpyCH4IV ACGT 1 cut(s) 523
HpyCH4V TGCA 3 cut(s) 391, 530, 665
HpyF10VI GCNNNNNNNGC 2 cut(s) 209, 355
HpyF3I CTNAG 2 cut(s) 28, 103
HpySE526I ACGT 1 cut(s) 523
Hsp92II CATG 4 cut(s) 39, 395, 403, 449
Ksp22I TGATCA 1 cut(s) 64
Kzo9I GATC 4 cut(s) 64, 75, 406, 569
LpnPI CCDG 6 cut(s) 75, 86, 104, 238, 366, 473
Lsp1109I GCAGC 3 cut(s) 163, 250, 361
LweI GCATC 1 cut(s) 41
MaeI CTAG 3 cut(s) 204, 296, 709
MaeII ACGT 1 cut(s) 523
MaeIII GTNAC 2 cut(s) 620, 704
MalI GATC 4 cut(s) 66, 77, 408, 571
MboI GATC 4 cut(s) 64, 75, 406, 569
MboII GAAGA 2 cut(s) 76, 542
MhlI GDGCHC 1 cut(s) 504
MluCI AATT 1 cut(s) 484
MnlI CCTC 6 cut(s) 233, 246, 246, 484, 529, 638
MseI TTAA 1 cut(s) 519
MspI CCGG 2 cut(s) 91, 225
MspR9I CCNGG 2 cut(s) 92, 225
Mva1269I GAATGC 1 cut(s) 167
MwoI GCNNNNNNNGC 2 cut(s) 209, 355
NciI CCSGG 2 cut(s) 92, 225
NdeII GATC 4 cut(s) 64, 75, 406, 569
NheI GCTAGC 1 cut(s) 203
NlaIII CATG 4 cut(s) 39, 395, 403, 449
NlaIV GGNNCC 2 cut(s) 96, 397
NmuCI GTSAC 2 cut(s) 620, 704
PaeR7I CTCGAG 1 cut(s) 237
PagI TCATGA 1 cut(s) 445
PctI GAATGC 1 cut(s) 167
PflMI CCANNNNNTGG 1 cut(s) 380
PkrI GCNGC 3 cut(s) 178, 265, 351
PspN4I GGNNCC 2 cut(s) 96, 397
PspPI GGNCC 3 cut(s) 141, 222, 227
PspXI VCTCGAGB 1 cut(s) 237
RsaI GTAC 1 cut(s) 114
RsaNI GTAC 1 cut(s) 113
SaqAI TTAA 1 cut(s) 519
SatI GCNGC 3 cut(s) 177, 264, 350
Sau3AI GATC 4 cut(s) 64, 75, 406, 569
Sau96I GGNCC 3 cut(s) 141, 222, 227
ScrFI CCNGG 2 cut(s) 92, 225
SduI GDGCHC 1 cut(s) 504
SfaNI GCATC 1 cut(s) 41
Sfr274I CTCGAG 1 cut(s) 237
SinI GGWCC 1 cut(s) 227
SlaI CTCGAG 1 cut(s) 237
SmlI CTYRAG 3 cut(s) 237, 353, 565
SmoI CTYRAG 3 cut(s) 237, 353, 565
Sse9I AATT 1 cut(s) 484
SspMI CTAG 3 cut(s) 204, 296, 709
StyD4I CCNGG 2 cut(s) 90, 223
TaaI ACNGT 1 cut(s) 138
TaiI ACGT 1 cut(s) 526
TaqI TCGA 4 cut(s) 78, 238, 431, 480
TasI AATT 1 cut(s) 484
Tru1I TTAA 1 cut(s) 519
Tru9I TTAA 1 cut(s) 519
TscAI CASTG 2 cut(s) 143, 616
TseFI GTSAC 2 cut(s) 620, 704
TseI GCWGC 3 cut(s) 176, 263, 349
Tsp45I GTSAC 2 cut(s) 620, 704
TspDTI ATGAA 3 cut(s) 36, 76, 351
TspRI CASTG 2 cut(s) 143, 616
Van91I CCANNNNNTGG 1 cut(s) 380
VpaK11BI GGWCC 1 cut(s) 227
XbaI TCTAGA 1 cut(s) 295
XhoI CTCGAG 1 cut(s) 237
XspI CTAG 3 cut(s) 204, 296, 709
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.