Rroxscaffold_2G00098160

F-box-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0004624
Physical Location & Seq
Forward (+)
19341944 .. 19345496
3553 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00098160.1

Sequence Viewer

Length: 603 bp
ATGGGTACGGATATGCTGTGTAAGAAAACAGTGGGCCAATCTTTTCGTGGAGAATGCTTGTGGCAAGCCGCTCTATCTACGACATTTCCTTTGGCTAGCAAAGCTAAAAGTTGGCCTGGACCTATCCCTCGAGGTTTGAGCAAGAGGAGATTTGCTGCTTTATATGTTAGTCAGCACATCATTGCTCTAGATGGTGAGATTGATGAGATAGTGGGGCATACTTATTTGTTTCTAAAAGAGCAGCTTGAGCTTTCATCTATGCCTCCACCATCTGGTATTCTGCACGGTACCATAATAGATCAGTTTATTGCTTGTGGTAAATCGAGAGACATGGCTCACGAGCTTGCTTCCCAGATATGGTTGGCTGTTCTCAACAATTTAGAGGAAACCGAACACACTTTTCAAATACTTAAACGTCTCGCACAAGAGGGGGATGTTTTTCTTCCATACCCATACTCAAGATCAATCAAAGTCCAATGGAAGGTGTTTGAAAAGCTTTTCACTGATTTTCGTGACTGCTTCAACCATGTGGATTACTATGACGTCTTGGCTTGTGCAAAGAACAAGTTTCAGCCAATACCATCTACTTGGTTAGGTCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

200

Amino Acids

22.75

Weight (kDa)

7.04

Isoelectric Point (pI)

48.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 546
AbsI CCTCGAGG 1 cut(s) 129
Acc65I GGTACC 1 cut(s) 287
AccB1I GGYRCC 1 cut(s) 287
AccB7I CCANNNNNTGG 1 cut(s) 272
AccBSI CCGCTC 1 cut(s) 71
AciI CCGC 1 cut(s) 69
AcyI GRCGYC 1 cut(s) 543
AfaI GTAC 2 cut(s) 7, 289
AfiI CCNNNNNNNGG 3 cut(s) 272, 357, 481
AgsI TTSAA 3 cut(s) 404, 491, 523
AjnI CCWGG 1 cut(s) 115
AluBI AGCT 5 cut(s) 104, 244, 250, 343, 496
AluI AGCT 5 cut(s) 104, 244, 250, 343, 496
Alw26I GTCTC 2 cut(s) 321, 422
Ama87I CYCGRG 1 cut(s) 129
AoxI GGCC 2 cut(s) 34, 113
ApeKI GCWGC 2 cut(s) 155, 241
ArsI GACNNNNNNTTYG 2 cut(s) 73, 105
Asp718I GGTACC 1 cut(s) 287
AspS9I GGNCC 2 cut(s) 34, 119
AsuHPI GGTGA 1 cut(s) 206
AsuNHI GCTAGC 1 cut(s) 95
AvaI CYCGRG 1 cut(s) 129
AvaII GGWCC 1 cut(s) 119
BanI GGYRCC 1 cut(s) 287
BauI CACGAG 1 cut(s) 338
BbvI GCAGC 2 cut(s) 142, 253
BccI CCATC 3 cut(s) 185, 277, 589
BciT130I CCWGG 1 cut(s) 117
BcoDI GTCTC 2 cut(s) 321, 422
BfaI CTAG 2 cut(s) 96, 188
BisI GCNGC 3 cut(s) 69, 156, 242
BlsI GCNGC 3 cut(s) 70, 157, 243
Bme1390I CCNGG 1 cut(s) 117
Bme18I GGWCC 1 cut(s) 119
BmeT110I CYCGRG 1 cut(s) 129
BmgT120I GGNCC 2 cut(s) 34, 119
BmiI GGNNCC 1 cut(s) 289
BmrFI CCNGG 1 cut(s) 117
BmtI GCTAGC 1 cut(s) 99
BpuEI CTTGAG 2 cut(s) 266, 442
BsaHI GRCGYC 1 cut(s) 543
Bsc4I CCNNNNNNNGG 3 cut(s) 272, 357, 481
Bse3DI GCAATG 1 cut(s) 180
BseBI CCWGG 1 cut(s) 117
BseGI GGATG 1 cut(s) 439
BseLI CCNNNNNNNGG 3 cut(s) 272, 357, 481
BseMI GCAATG 1 cut(s) 180
BseRI GAGGAG 1 cut(s) 160
BseXI GCAGC 2 cut(s) 142, 253
BsgI GTGCAG 1 cut(s) 266
BshFI GGCC 2 cut(s) 36, 115
BshNI GGYRCC 1 cut(s) 287
BsiHKCI CYCGRG 1 cut(s) 129
BslI CCNNNNNNNGG 3 cut(s) 272, 357, 481
BsmAI GTCTC 2 cut(s) 321, 422
BsmBI CGTCTC 1 cut(s) 422
BsmI GAATGC 1 cut(s) 59
BsnI GGCC 2 cut(s) 36, 115
BsoBI CYCGRG 1 cut(s) 129
Bsp143I GATC 2 cut(s) 298, 461
BspACI CCGC 1 cut(s) 69
BspANI GGCC 2 cut(s) 36, 115
BspLI GGNNCC 1 cut(s) 289
BspOI GCTAGC 1 cut(s) 99
BspT107I GGYRCC 1 cut(s) 287
BsrBI CCGCTC 1 cut(s) 71
BsrDI GCAATG 1 cut(s) 180
BssMI GATC 2 cut(s) 298, 461
BssNI GRCGYC 1 cut(s) 543
BssSI CACGAG 1 cut(s) 338
Bst2BI CACGAG 1 cut(s) 338
Bst2UI CCWGG 1 cut(s) 117
Bst4CI ACNGT 2 cut(s) 31, 287
BstACI GRCGYC 1 cut(s) 543
BstC8I GCNNGC 3 cut(s) 66, 97, 345
BstF5I GGATG 1 cut(s) 439
BstKTI GATC 2 cut(s) 301, 464
BstMAI GTCTC 2 cut(s) 321, 422
BstMBI GATC 2 cut(s) 298, 461
BstMWI GCNNNNNNNGC 2 cut(s) 101, 247
BstNI CCWGG 1 cut(s) 117
BstSCI CCNGG 1 cut(s) 115
BstV1I GCAGC 2 cut(s) 142, 253
BstXI CCANNNNNNTGG 1 cut(s) 588
BsuRI GGCC 2 cut(s) 36, 115
BtsCI GGATG 1 cut(s) 439
BtsIMutI CAGTG 2 cut(s) 36, 501
Cac8I GCNNGC 3 cut(s) 66, 97, 345
Cfr13I GGNCC 2 cut(s) 34, 119
Csp6I GTAC 2 cut(s) 6, 288
CviAII CATG 2 cut(s) 331, 527
CviQI GTAC 2 cut(s) 6, 288
DpnI GATC 2 cut(s) 300, 463
DpnII GATC 2 cut(s) 298, 461
Eco47I GGWCC 1 cut(s) 119
Eco88I CYCGRG 1 cut(s) 129
EcoRII CCWGG 1 cut(s) 115
Esp3I CGTCTC 1 cut(s) 422
FaeI CATG 2 cut(s) 334, 530
FalI AAGNNNNNCTT 2 cut(s) 228, 260
FatI CATG 2 cut(s) 330, 526
Fnu4HI GCNGC 3 cut(s) 69, 156, 242
FokI GGATG 1 cut(s) 446
Fsp4HI GCNGC 3 cut(s) 69, 156, 242
FspBI CTAG 2 cut(s) 96, 188
GluI GCNGC 3 cut(s) 69, 156, 242
HaeIII GGCC 2 cut(s) 36, 115
Hin1I GRCGYC 1 cut(s) 543
Hin1II CATG 2 cut(s) 334, 530
HindIII AAGCTT 1 cut(s) 494
HphI GGTGA 1 cut(s) 206
Hpy188III TCNNGA 5 cut(s) 188, 324, 338, 459, 512
HpyAV CCTTC 1 cut(s) 475
HpyCH4III ACNGT 2 cut(s) 31, 287
HpyCH4IV ACGT 2 cut(s) 415, 543
HpyCH4V TGCA 2 cut(s) 283, 557
HpyF10VI GCNNNNNNNGC 2 cut(s) 101, 247
HpySE526I ACGT 2 cut(s) 415, 543
Hsp92I GRCGYC 1 cut(s) 543
Hsp92II CATG 2 cut(s) 334, 530
KpnI GGTACC 1 cut(s) 291
Kzo9I GATC 2 cut(s) 298, 461
LpnPI CCDG 4 cut(s) 102, 129, 258, 365
Lsp1109I GCAGC 2 cut(s) 142, 253
MaeI CTAG 2 cut(s) 96, 188
MaeII ACGT 2 cut(s) 415, 543
MaeIII GTNAC 2 cut(s) 512, 596
MalI GATC 2 cut(s) 300, 463
MbiI CCGCTC 1 cut(s) 71
MboI GATC 2 cut(s) 298, 461
MboII GAAGA 1 cut(s) 434
MluCI AATT 1 cut(s) 376
MnlI CCTC 6 cut(s) 125, 138, 138, 273, 376, 421
MseI TTAA 1 cut(s) 411
MspR9I CCNGG 1 cut(s) 117
Mva1269I GAATGC 1 cut(s) 59
MvaI CCWGG 1 cut(s) 117
MwoI GCNNNNNNNGC 2 cut(s) 101, 247
NdeII GATC 2 cut(s) 298, 461
NheI GCTAGC 1 cut(s) 95
NlaIII CATG 2 cut(s) 334, 530
NlaIV GGNNCC 1 cut(s) 289
NmuCI GTSAC 2 cut(s) 512, 596
PaeR7I CTCGAG 1 cut(s) 129
PctI GAATGC 1 cut(s) 59
PflMI CCANNNNNTGG 1 cut(s) 272
PkrI GCNGC 3 cut(s) 70, 157, 243
Psp6I CCWGG 1 cut(s) 115
PspGI CCWGG 1 cut(s) 115
PspN4I GGNNCC 1 cut(s) 289
PspPI GGNCC 2 cut(s) 34, 119
PspXI VCTCGAGB 1 cut(s) 129
RsaI GTAC 2 cut(s) 7, 289
RsaNI GTAC 2 cut(s) 6, 288
SaqAI TTAA 1 cut(s) 411
SatI GCNGC 3 cut(s) 69, 156, 242
Sau3AI GATC 2 cut(s) 298, 461
Sau96I GGNCC 2 cut(s) 34, 119
ScrFI CCNGG 1 cut(s) 117
Sfr274I CTCGAG 1 cut(s) 129
SinI GGWCC 1 cut(s) 119
SlaI CTCGAG 1 cut(s) 129
SmlI CTYRAG 3 cut(s) 129, 245, 457
SmoI CTYRAG 3 cut(s) 129, 245, 457
Sse9I AATT 1 cut(s) 376
SsiI CCGC 1 cut(s) 69
SspMI CTAG 2 cut(s) 96, 188
StyD4I CCNGG 1 cut(s) 115
TaaI ACNGT 2 cut(s) 31, 287
TaiI ACGT 2 cut(s) 418, 546
TaqI TCGA 2 cut(s) 130, 323
TasI AATT 1 cut(s) 376
TauI GCSGC 1 cut(s) 71
Tru1I TTAA 1 cut(s) 411
Tru9I TTAA 1 cut(s) 411
TscAI CASTG 2 cut(s) 36, 508
TseFI GTSAC 2 cut(s) 512, 596
TseI GCWGC 2 cut(s) 155, 241
Tsp45I GTSAC 2 cut(s) 512, 596
TspDTI ATGAA 1 cut(s) 243
TspGWI ACGGA 1 cut(s) 23
TspRI CASTG 2 cut(s) 36, 508
Van91I CCANNNNNTGG 1 cut(s) 272
VpaK11BI GGWCC 1 cut(s) 119
XbaI TCTAGA 1 cut(s) 187
XcmI CCANNNNNNNNNTGG 1 cut(s) 44
XhoI CTCGAG 1 cut(s) 129
XspI CTAG 2 cut(s) 96, 188
ZraI GACGTC 1 cut(s) 544
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.