Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0004624

Physical Location & Seq

Genomic Coordinates Forward (+)

6351446 .. 6354590

Gene Structure 3145 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g08280.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGGAAATTCAAGTGAAACTAAGGAGAGGAAAACAGGAGCCTTGTCTTTCTTCCTCCACTAGAACATTCAGCAGAAAATTCGAGCAAATTTATAAAATAAAAAAGAAACCCTTTGAGGCTGAAAAGCTCACTCCTTCCTCTCAGTCTCTCAGCAAGTGCAGAACCCTAATGACAGATAACAATCAAAATGACAGTTTAATGTCAGTTGGTAGTTCGTTCGGAAAGCTTCCTGATCATTTGCTAATAGAAATTTTCATCCGAGTTCCTGTCTCAGAGTGGGCACAAATCTCATGTGTTAAAAAACAGTGGGCCAATTTGTTTCGCGAAGAATTCTTGTGGCAAGCTGCTATTGCTATGACATTTCCTTTGGCTAGCCAAGCTAAAAGGTGGCCGGGACCTATCCCTCGGGGATTGAACAAGAGGAGATTTGAAGCTTTATATGTCAGTAAACATATCTTTGCTCTAGATGGTGAGATTGATGAGATCATGGGCCATAGTTATTTGTTTCTAAAAGAGCAGCTTGAGCGTTCAACCATGCCACCCTCTTCCAGTATACTGCACGGAACCCTCATAGATCAGTTTATTGCTTGTGGGAAATCGAGAGACATGGCTCATGATCTTGCTTCCCAGATCTGGCTGGCTGTTCTTGACAATTTAGAGGAAAACGAGCAAACTTTTCAATTACTGAAACGTCTTGCACAAGAAGCCGATGTTTTTCTTCTGTACCCGTACTCAAGATCAATCACAGTCCAATGGAGGGTGTTTGAAAAACTCTTCACAGATTTTCGCGACTGCTTCAATCATGTAGATTACTATGATGTGTTGGCTTGTGCGAAGAACAAGTTTCAGCCAATACCATCGACTTGGTTAGGTTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

293

Amino Acids

33.93

Weight (kDa)

8.8

Isoelectric Point (pI)

57.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004624)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20270 AT3G20270 AT3G20270 AT3G20270 AT3G20270 AT3G20270
fragaria_vesca	FvH4_6g36931 FvH4_6g36931 FvH4_6g36931
malus_domestica	MD09G1165400.v1.1 MD17G1162300.v1.1
prunus_persica	Prupe.3G023100_v2.0.a1
pyrus_communis	pycom09g08280
rosa_chinensis	RchiOBHm_Chr2g0149371 RchiOBHm_Chr2g0149381
rosa_laevigata	RLG00000020396 RLG00000020402
rosa_multiflora	Rmu_co8329327.1_g000001 Rmu_sc0000873.1_g000018 Rmu_sc0006867.1_g000001
rosa_roxburghii	Rroxscaffold_2G00098150 Rroxscaffold_2G00098160
rosa_rugosa	Rorug02G0411900
rosa_samantha	Rh2AG471600 Rh2AG471700 Rh2BG483900 Rh2CG457600 Rh2CG457700 Rh2DG492900 Rh2DG493000
rosa_wichuraiana	Rw2G038380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	93
AccI	GTMKAC	1 cut(s)	553
AccII	CGCG	2 cut(s)	324, 789
AcoI	YGGCCR	1 cut(s)	389
AcsI	RAATTY	5 cut(s)	6, 77, 87, 249, 329
AfaI	GTAC	2 cut(s)	725, 731
AfiI	CCNNNNNNNGG	2 cut(s)	633, 757
AgsI	TTSAA	7 cut(s)	11, 415, 431, 531, 680, 767, 799
AluBI	AGCT	6 cut(s)	127, 226, 344, 380, 434, 520
AluI	AGCT	6 cut(s)	127, 226, 344, 380, 434, 520
Alw26I	GTCTC	3 cut(s)	150, 274, 597
Ama87I	CYCGRG	1 cut(s)	405
AoxI	GGCC	3 cut(s)	309, 389, 490
ApeKI	GCWGC	2 cut(s)	344, 517
ApoI	RAATTY	5 cut(s)	6, 77, 87, 249, 329
ArsI	GACNNNNNNTTYG	2 cut(s)	349, 381
AspS9I	GGNCC	3 cut(s)	309, 395, 490
AsuC2I	CCSGG	1 cut(s)	393
AsuHPI	GGTGA	1 cut(s)	482
AsuNHI	GCTAGC	1 cut(s)	371
AvaI	CYCGRG	1 cut(s)	405
AvaII	GGWCC	1 cut(s)	395
BaeGI	GKGCMC	1 cut(s)	283
BbvI	GCAGC	2 cut(s)	331, 529
BccI	CCATC	2 cut(s)	461, 865
BcgI	CGANNNNNNTGC	2 cut(s)	61, 95
BclI	TGATCA	1 cut(s)	232
BcnI	CCSGG	1 cut(s)	393
BcoDI	GTCTC	3 cut(s)	150, 274, 597
BfaI	CTAG	3 cut(s)	60, 372, 464
BglII	AGATCT	1 cut(s)	630
BisI	GCNGC	2 cut(s)	345, 518
BlsI	GCNGC	2 cut(s)	346, 519
Bme1390I	CCNGG	1 cut(s)	393
Bme18I	GGWCC	1 cut(s)	395
BmeT110I	CYCGRG	1 cut(s)	405
BmgT120I	GGNCC	3 cut(s)	309, 395, 490
BmiI	GGNNCC	3 cut(s)	39, 396, 565
BmrFI	CCNGG	1 cut(s)	393
BmtI	GCTAGC	1 cut(s)	375
BpuEI	CTTGAG	2 cut(s)	542, 718
BpuMI	CCSGG	1 cut(s)	393
BsaBI	GATNNNNATC	1 cut(s)	180
BsaJI	CCNNGG	1 cut(s)	404
Bsc4I	CCNNNNNNNGG	2 cut(s)	633, 757
Bse1I	ACTGG	1 cut(s)	549
Bse8I	GATNNNNATC	1 cut(s)	180
BseDI	CCNNGG	1 cut(s)	404
BseGI	GGATG	1 cut(s)	255
BseJI	GATNNNNATC	1 cut(s)	180
BseLI	CCNNNNNNNGG	2 cut(s)	633, 757
BseMII	CTCAG	3 cut(s)	155, 163, 285
BseNI	ACTGG	1 cut(s)	549
BseRI	GAGGAG	1 cut(s)	436
BseSI	GKGCMC	1 cut(s)	283
BseXI	GCAGC	2 cut(s)	331, 529
BsgI	GTGCAG	2 cut(s)	178, 542
Bsh1236I	CGCG	2 cut(s)	324, 789
BshFI	GGCC	3 cut(s)	311, 391, 492
BsiHKCI	CYCGRG	1 cut(s)	405
BsiSI	CCGG	1 cut(s)	392
BslFI	GGGAC	1 cut(s)	408
BslI	CCNNNNNNNGG	2 cut(s)	633, 757
BsmAI	GTCTC	3 cut(s)	150, 274, 597
BsmFI	GGGAC	1 cut(s)	408
BsnI	GGCC	3 cut(s)	311, 391, 492
BsoBI	CYCGRG	1 cut(s)	405
Bsp1286I	GDGCHC	1 cut(s)	283
Bsp143I	GATC	6 cut(s)	232, 483, 574, 616, 630, 737
Bsp68I	TCGCGA	2 cut(s)	324, 789
BspANI	GGCC	3 cut(s)	311, 391, 492
BspCNI	CTCAG	3 cut(s)	154, 162, 284
BspFNI	CGCG	2 cut(s)	324, 789
BspHI	TCATGA	1 cut(s)	613
BspLI	GGNNCC	3 cut(s)	39, 396, 565
BspOI	GCTAGC	1 cut(s)	375
BsrI	ACTGG	1 cut(s)	549
BssECI	CCNNGG	1 cut(s)	404
BssMI	GATC	6 cut(s)	232, 483, 574, 616, 630, 737
BssNAI	GTATAC	1 cut(s)	554
Bst1107I	GTATAC	1 cut(s)	554
Bst4CI	ACNGT	3 cut(s)	194, 306, 748
Bst6I	CTCTTC	2 cut(s)	550, 779
BstC8I	GCNNGC	3 cut(s)	342, 373, 639
BstDEI	CTNAG	4 cut(s)	20, 141, 149, 271
BstF5I	GGATG	1 cut(s)	255
BstFNI	CGCG	2 cut(s)	324, 789
BstKTI	GATC	6 cut(s)	235, 486, 577, 619, 633, 740
BstMAI	GTCTC	3 cut(s)	150, 274, 597
BstMBI	GATC	6 cut(s)	232, 483, 574, 616, 630, 737
BstMWI	GCNNNNNNNGC	4 cut(s)	350, 377, 523, 704
BstSCI	CCNGG	1 cut(s)	391
BstSLI	GKGCMC	1 cut(s)	283
BstUI	CGCG	2 cut(s)	324, 789
BstV1I	GCAGC	2 cut(s)	331, 529
BstX2I	RGATCY	1 cut(s)	630
BstXI	CCANNNNNNTGG	1 cut(s)	864
BstYI	RGATCY	1 cut(s)	630
BstZ17I	GTATAC	1 cut(s)	554
BsuRI	GGCC	3 cut(s)	311, 391, 492
BtsCI	GGATG	1 cut(s)	255
BtsIMutI	CAGTG	1 cut(s)	311
BtuMI	TCGCGA	2 cut(s)	324, 789
Cac8I	GCNNGC	3 cut(s)	342, 373, 639
CciI	TCATGA	1 cut(s)	613
Cfr13I	GGNCC	3 cut(s)	309, 395, 490
Csp6I	GTAC	2 cut(s)	724, 730
CviAII	CATG	6 cut(s)	291, 487, 535, 607, 614, 803
CviQI	GTAC	2 cut(s)	724, 730
DdeI	CTNAG	4 cut(s)	20, 141, 149, 271
DpnI	GATC	6 cut(s)	234, 485, 576, 618, 632, 739
DpnII	GATC	6 cut(s)	232, 483, 574, 616, 630, 737
EaeI	YGGCCR	1 cut(s)	389
Eam1104I	CTCTTC	2 cut(s)	550, 779
EarI	CTCTTC	2 cut(s)	550, 779
Eco47I	GGWCC	1 cut(s)	395
Eco88I	CYCGRG	1 cut(s)	405
EcoO109I	RGGNCCY	1 cut(s)	395
EcoRI	GAATTC	1 cut(s)	329
FaeI	CATG	6 cut(s)	294, 490, 538, 610, 617, 806
FalI	AAGNNNNNCTT	4 cut(s)	95, 127, 504, 536
FaqI	GGGAC	1 cut(s)	408
FatI	CATG	6 cut(s)	290, 486, 534, 606, 613, 802
FbaI	TGATCA	1 cut(s)	232
FblI	GTMKAC	1 cut(s)	553
Fnu4HI	GCNGC	2 cut(s)	345, 518
FokI	GGATG	1 cut(s)	242
Fsp4HI	GCNGC	2 cut(s)	345, 518
FspBI	CTAG	3 cut(s)	60, 372, 464
GluI	GCNGC	2 cut(s)	345, 518
HaeIII	GGCC	3 cut(s)	311, 391, 492
HapII	CCGG	1 cut(s)	392
Hin1II	CATG	6 cut(s)	294, 490, 538, 610, 617, 806
HindIII	AAGCTT	2 cut(s)	224, 432
HpaII	CCGG	1 cut(s)	392
HphI	GGTGA	1 cut(s)	482
Hpy166II	GTNNAC	2 cut(s)	449, 554
Hpy188I	TCNGA	3 cut(s)	221, 260, 274
Hpy188III	TCNNGA	8 cut(s)	230, 323, 464, 600, 614, 647, 735, 788
Hpy8I	GTNNAC	2 cut(s)	449, 554
HpyAV	CCTTC	1 cut(s)	144
HpyCH4III	ACNGT	3 cut(s)	194, 306, 748
HpyCH4IV	ACGT	1 cut(s)	691
HpyCH4V	TGCA	3 cut(s)	159, 559, 698
HpyF10VI	GCNNNNNNNGC	4 cut(s)	350, 377, 523, 704
HpyF3I	CTNAG	4 cut(s)	20, 141, 149, 271
HpySE526I	ACGT	1 cut(s)	691
Hsp92II	CATG	6 cut(s)	294, 490, 538, 610, 617, 806
Ksp22I	TGATCA	1 cut(s)	232
Kzo9I	GATC	6 cut(s)	232, 483, 574, 616, 630, 737
LmnI	GCTCC	1 cut(s)	37
LpnPI	CCDG	8 cut(s)	20, 243, 279, 405, 562, 619, 623, 641
Lsp1109I	GCAGC	2 cut(s)	331, 529
MaeI	CTAG	3 cut(s)	60, 372, 464
MaeII	ACGT	1 cut(s)	691
MaeIII	GTNAC	1 cut(s)	872
MalI	GATC	6 cut(s)	234, 485, 576, 618, 632, 739
MboI	GATC	6 cut(s)	232, 483, 574, 616, 630, 737
MboII	GAAGA	6 cut(s)	42, 338, 537, 710, 766, 847
MflI	RGATCY	1 cut(s)	630
MhlI	GDGCHC	1 cut(s)	283
MluCI	AATT	8 cut(s)	6, 77, 87, 249, 313, 329, 652, 680
MseI	TTAA	2 cut(s)	197, 297
MspI	CCGG	1 cut(s)	392
MspR9I	CCNGG	1 cut(s)	393
MvnI	CGCG	2 cut(s)	324, 789
MwoI	GCNNNNNNNGC	4 cut(s)	350, 377, 523, 704
NciI	CCSGG	1 cut(s)	393
NdeII	GATC	6 cut(s)	232, 483, 574, 616, 630, 737
NheI	GCTAGC	1 cut(s)	371
NlaIII	CATG	6 cut(s)	294, 490, 538, 610, 617, 806
NlaIV	GGNNCC	3 cut(s)	39, 396, 565
NruI	TCGCGA	2 cut(s)	324, 789
PagI	TCATGA	1 cut(s)	613
PkrI	GCNGC	2 cut(s)	346, 519
PpuMI	RGGWCCY	1 cut(s)	395
PsiI	TTATAA	1 cut(s)	93
Psp5II	RGGWCCY	1 cut(s)	395
PspN4I	GGNNCC	3 cut(s)	39, 396, 565
PspPI	GGNCC	3 cut(s)	309, 395, 490
PspPPI	RGGWCCY	1 cut(s)	395
PsuI	RGATCY	1 cut(s)	630
RruI	TCGCGA	2 cut(s)	324, 789
RsaI	GTAC	2 cut(s)	725, 731
RsaNI	GTAC	2 cut(s)	724, 730
SaqAI	TTAA	2 cut(s)	197, 297
SatI	GCNGC	2 cut(s)	345, 518
Sau3AI	GATC	6 cut(s)	232, 483, 574, 616, 630, 737
Sau96I	GGNCC	3 cut(s)	309, 395, 490
ScrFI	CCNGG	1 cut(s)	393
SduI	GDGCHC	1 cut(s)	283
SinI	GGWCC	1 cut(s)	395
SmlI	CTYRAG	2 cut(s)	521, 733
SmoI	CTYRAG	2 cut(s)	521, 733
Sse9I	AATT	8 cut(s)	6, 77, 87, 249, 313, 329, 652, 680
SspMI	CTAG	3 cut(s)	60, 372, 464
StyD4I	CCNGG	1 cut(s)	391
TaaI	ACNGT	3 cut(s)	194, 306, 748
TaiI	ACGT	1 cut(s)	694
TaqI	TCGA	3 cut(s)	81, 599, 860
TasI	AATT	8 cut(s)	6, 77, 87, 249, 313, 329, 652, 680
Tru1I	TTAA	2 cut(s)	197, 297
Tru9I	TTAA	2 cut(s)	197, 297
TscAI	CASTG	1 cut(s)	311
TseI	GCWGC	2 cut(s)	344, 517
TspDTI	ATGAA	1 cut(s)	244
TspGWI	ACGGA	1 cut(s)	576
TspRI	CASTG	1 cut(s)	311
VpaK11BI	GGWCC	1 cut(s)	395
XapI	RAATTY	5 cut(s)	6, 77, 87, 249, 329
XbaI	TCTAGA	1 cut(s)	463
XmiI	GTMKAC	1 cut(s)	553
XspI	CTAG	3 cut(s)	60, 372, 464

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.