Rmu_sc0000873.1_g000018

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000873.1
Physical Location & Seq
Reverse (-)
75554 .. 80278
4725 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000873.1_g000018.1.cds

Sequence Viewer

Length: 1503 bp
atgactacccacagcactctcttccacttccaccacacttcaccttcaaacccactctcctcctccaccaccactccacaccttcacctctcctgctccttcaaacccaaacaccccaaaccctcctccttctccttcgctcccacaccaatacccgcgcgagacagagtcatagacttcggcaaacacaagggaaaaatgcttggcacactcccttccacctacctcaaatgggtctccaccaacctccgcgcccgtgacttcgagcactgggccaagctcgccgaccaggtcctaagcgacgccgtttaccgcgaccgcatcgagtgggagtccgccgagaacgcgctcagcggtaacagaagcaacgccggcggagtttcggagcttctggggatcagcgacaggttcgggtgggacaacgatgacaaagttggctggagtaaagtgaacttcgagcttttgggtacttcgaaaggtgggagaattccgaggaggaagagtgagactgaagttgaagaacagagtggtttggaggagagagagaagaagggtgagggtttaggggagaagaggagggaaaggagggagaggaggatgaggatgcagagggtggaacgtggggttgggaaggaggagaaggttgggggtattttagggaatggagttggattggggaggactagcaaggagaatggtgatgaagataattggatggtggataattcgaaaaagtttcctggacgcgagtctctgttgaggaaagcttacagcagaaggttcttaacgctaatgacaaataataaagaaaatgacaccttaacatcaggtgacagttcatttggaaagcttcctgatcatctcctaatagagatcttcatccgggttcccgtctctgaatgggtacggatatgctgtgtaagaaaacagtgggccaatctttttcgtggagaatgcttgtggcgagctgctctatctacgacatttcctttggctagcaaagctaaaagttggcctggacctatccctcgaggtttgagcaagaggagatttgctgctttatatgttagtgagcacatctttcctctagatggtgagattgatgagatagtggggcatacttatttgtttctaaaagagcagcttgagctttcatctatgcctccaccatctggtattttgcacggtaccataatagatcagtttattgcttgtggtaaatcaagagacatggctcacgagcttgcttcccagatatggttggctgttcttgacaatttagaggaaaccgaacacacttttcaaatacttaaacgtctcgcacaagagggggatgtttttcttccatacccgtactcaagatcaatcaaagtccaatggaaggtgtttgaaaagcttttcactgattttcgtgactgcctcaaccatgtggattactatgatgtcttggctagtgcaaagaacaagtttcagccaataccatctacttggttaggtcactaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

500

Amino Acids

56.94

Weight (kDa)

9.08

Isoelectric Point (pI)

40.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 1029
Acc65I GGTACC 1 cut(s) 1187
AccB1I GGYRCC 1 cut(s) 1187
AccB7I CCANNNNNTGG 1 cut(s) 1172
AccII CGCG 6 cut(s) 158, 160, 252, 315, 347, 747
AciI CCGC 7 cut(s) 156, 250, 313, 319, 336, 354, 375
AclWI GGATC 1 cut(s) 404
AcsI RAATTY 1 cut(s) 486
AcuI CTGAAG 1 cut(s) 531
AcyI GRCGYC 1 cut(s) 303
AfaI GTAC 4 cut(s) 469, 906, 1189, 1355
AfiI CCNNNNNNNGG 5 cut(s) 232, 1091, 1172, 1257, 1381
AgsI TTSAA 5 cut(s) 48, 103, 518, 1304, 1391
AjnI CCWGG 3 cut(s) 288, 739, 1015
AjuI GAANNNNNNNTTGG 2 cut(s) 609, 641
Alw21I GWGCWC 2 cut(s) 270, 1077
Alw26I GTCTC 7 cut(s) 156, 241, 500, 756, 898, 1221, 1322
AlwI GGATC 1 cut(s) 404
Ama87I CYCGRG 1 cut(s) 1029
AoxI GGCC 3 cut(s) 273, 933, 1013
ApeKI GCWGC 3 cut(s) 968, 1055, 1141
ApoI RAATTY 1 cut(s) 486
ArsI GACNNNNNNTTYG 4 cut(s) 824, 856, 973, 1005
Asp718I GGTACC 1 cut(s) 1187
AspLEI GCGC 3 cut(s) 160, 254, 349
AspS9I GGNCC 4 cut(s) 273, 292, 933, 1019
AsuC2I CCSGG 1 cut(s) 884
AsuHPI GGTGA 6 cut(s) 33, 77, 566, 710, 842, 1106
AsuII TTCGAA 2 cut(s) 473, 728
AsuNHI GCTAGC 1 cut(s) 995
AvaI CYCGRG 1 cut(s) 1029
AvaII GGWCC 2 cut(s) 292, 1019
BanI GGYRCC 1 cut(s) 1187
BauI CACGAG 1 cut(s) 1238
Bbv12I GWGCWC 2 cut(s) 270, 1077
BbvI GCAGC 3 cut(s) 955, 1042, 1153
BccI CCATC 4 cut(s) 709, 1085, 1177, 1489
BceAI ACGGC 1 cut(s) 290
BciT130I CCWGG 3 cut(s) 290, 741, 1017
BclI TGATCA 1 cut(s) 856
BcnI CCSGG 1 cut(s) 884
BcoDI GTCTC 7 cut(s) 156, 241, 500, 756, 898, 1221, 1322
BfaI CTAG 4 cut(s) 684, 996, 1088, 1452
BglII AGATCT 1 cut(s) 873
BisI GCNGC 3 cut(s) 969, 1056, 1142
BlpI GCTNAGC 1 cut(s) 350
BlsI GCNGC 3 cut(s) 970, 1057, 1143
Bme1390I CCNGG 4 cut(s) 290, 741, 884, 1017
Bme18I GGWCC 2 cut(s) 292, 1019
BmeT110I CYCGRG 1 cut(s) 1029
BmgT120I GGNCC 4 cut(s) 273, 292, 933, 1019
BmiI GGNNCC 2 cut(s) 888, 1189
BmrFI CCNGG 4 cut(s) 290, 741, 884, 1017
BmrI ACTGGG 1 cut(s) 280
BmsI GCATC 2 cut(s) 330, 594
BmtI GCTAGC 1 cut(s) 999
BmuI ACTGGG 1 cut(s) 280
BoxI GACNNNNGTC 1 cut(s) 748
BpmI CTGGAG 1 cut(s) 460
Bpu10I CCTNAGC 1 cut(s) 296
Bpu1102I GCTNAGC 1 cut(s) 350
Bpu14I TTCGAA 2 cut(s) 473, 728
BpuEI CTTGAG 2 cut(s) 1166, 1342
BpuMI CCSGG 1 cut(s) 884
BsaBI GATNNNNATC 1 cut(s) 878
BsaHI GRCGYC 1 cut(s) 303
BsaI GGTCTC 1 cut(s) 241
BsaJI CCNNGG 1 cut(s) 491
BsaXI ACNNNNNCTCC 6 cut(s) 41, 58, 71, 88, 487, 517
Bsc4I CCNNNNNNNGG 5 cut(s) 232, 1091, 1172, 1257, 1381
Bse118I RCCGGY 1 cut(s) 371
Bse1I ACTGG 1 cut(s) 275
Bse8I GATNNNNATC 1 cut(s) 878
BseBI CCWGG 3 cut(s) 290, 741, 1017
BseDI CCNNGG 1 cut(s) 491
BseGI GGATG 5 cut(s) 603, 609, 720, 879, 1339
BseJI GATNNNNATC 1 cut(s) 878
BseLI CCNNNNNNNGG 5 cut(s) 232, 1091, 1172, 1257, 1381
BseMII CTCAG 1 cut(s) 364
BseNI ACTGG 1 cut(s) 275
BseRI GAGGAG 9 cut(s) 49, 52, 115, 508, 551, 589, 607, 650, 1060
BseXI GCAGC 3 cut(s) 955, 1042, 1153
Bsh1236I CGCG 6 cut(s) 158, 160, 252, 315, 347, 747
Bsh1285I CGRYCG 1 cut(s) 319
BshFI GGCC 3 cut(s) 275, 935, 1015
BshNI GGYRCC 1 cut(s) 1187
BsiEI CGRYCG 1 cut(s) 319
BsiHKAI GWGCWC 2 cut(s) 270, 1077
BsiHKCI CYCGRG 1 cut(s) 1029
BsiSI CCGG 2 cut(s) 372, 883
BslFI GGGAC 1 cut(s) 431
BslI CCNNNNNNNGG 5 cut(s) 232, 1091, 1172, 1257, 1381
BsmAI GTCTC 7 cut(s) 156, 241, 500, 756, 898, 1221, 1322
BsmBI CGTCTC 2 cut(s) 898, 1322
BsmFI GGGAC 1 cut(s) 431
BsmI GAATGC 1 cut(s) 959
BsnI GGCC 3 cut(s) 275, 935, 1015
Bso31I GGTCTC 1 cut(s) 241
BsoBI CYCGRG 1 cut(s) 1029
Bsp119I TTCGAA 2 cut(s) 473, 728
Bsp1286I GDGCHC 2 cut(s) 270, 1077
Bsp143I GATC 5 cut(s) 396, 856, 873, 1198, 1361
Bsp1720I GCTNAGC 1 cut(s) 350
BspACI CCGC 7 cut(s) 156, 250, 313, 319, 336, 354, 375
BspANI GGCC 3 cut(s) 275, 935, 1015
BspCNI CTCAG 1 cut(s) 363
BspFNI CGCG 6 cut(s) 158, 160, 252, 315, 347, 747
BspLI GGNNCC 2 cut(s) 888, 1189
BspOI GCTAGC 1 cut(s) 999
BspPI GGATC 1 cut(s) 404
BspT104I TTCGAA 2 cut(s) 473, 728
BspT107I GGYRCC 1 cut(s) 1187
BspTNI GGTCTC 1 cut(s) 241
BsrFI RCCGGY 1 cut(s) 371
BsrI ACTGG 1 cut(s) 275
BssAI RCCGGY 1 cut(s) 371
BssECI CCNNGG 1 cut(s) 491
BssMI GATC 5 cut(s) 396, 856, 873, 1198, 1361
BssNI GRCGYC 1 cut(s) 303
BssSI CACGAG 1 cut(s) 1238
Bst2BI CACGAG 1 cut(s) 1238
Bst2UI CCWGG 3 cut(s) 290, 741, 1017
Bst4CI ACNGT 3 cut(s) 836, 930, 1187
Bst6I CTCTTC 3 cut(s) 26, 494, 566
BstACI GRCGYC 1 cut(s) 303
BstBI TTCGAA 2 cut(s) 473, 728
BstC8I GCNNGC 5 cut(s) 282, 373, 966, 997, 1245
BstDEI CTNAG 2 cut(s) 296, 350
BstF5I GGATG 5 cut(s) 603, 609, 720, 879, 1339
BstFNI CGCG 6 cut(s) 158, 160, 252, 315, 347, 747
BstHHI GCGC 3 cut(s) 160, 254, 349
BstKTI GATC 5 cut(s) 399, 859, 876, 1201, 1364
BstMAI GTCTC 7 cut(s) 156, 241, 500, 756, 898, 1221, 1322
BstMBI GATC 5 cut(s) 396, 856, 873, 1198, 1361
BstMCI CGRYCG 1 cut(s) 319
BstMWI GCNNNNNNNGC 5 cut(s) 281, 344, 372, 1001, 1147
BstNI CCWGG 3 cut(s) 290, 741, 1017
BstPAI GACNNNNGTC 1 cut(s) 748
BstSCI CCNGG 4 cut(s) 288, 739, 882, 1015
BstUI CGCG 6 cut(s) 158, 160, 252, 315, 347, 747
BstV1I GCAGC 3 cut(s) 955, 1042, 1153
BstX2I RGATCY 1 cut(s) 873
BstXI CCANNNNNNTGG 1 cut(s) 1488
BstYI RGATCY 1 cut(s) 873
BsuRI GGCC 3 cut(s) 275, 935, 1015
BtsCI GGATG 5 cut(s) 603, 609, 720, 879, 1339
BtsIMutI CAGTG 3 cut(s) 268, 935, 1401
Cac8I GCNNGC 5 cut(s) 282, 373, 966, 997, 1245
CfoI GCGC 3 cut(s) 160, 254, 349
Cfr10I RCCGGY 1 cut(s) 371
Cfr13I GGNCC 4 cut(s) 273, 292, 933, 1019
CseI GACGC 2 cut(s) 311, 753
CsiI ACCWGGT 1 cut(s) 288
Csp6I GTAC 4 cut(s) 468, 905, 1188, 1354
CviAII CATG 2 cut(s) 1231, 1427
CviQI GTAC 4 cut(s) 468, 905, 1188, 1354
DdeI CTNAG 2 cut(s) 296, 350
DpnI GATC 5 cut(s) 398, 858, 875, 1200, 1363
DpnII GATC 5 cut(s) 396, 856, 873, 1198, 1361
Eam1104I CTCTTC 3 cut(s) 26, 494, 566
EarI CTCTTC 3 cut(s) 26, 494, 566
EciI GGCGGA 2 cut(s) 325, 390
Eco31I GGTCTC 1 cut(s) 241
Eco47I GGWCC 2 cut(s) 292, 1019
Eco57I CTGAAG 1 cut(s) 531
Eco88I CYCGRG 1 cut(s) 1029
EcoO109I RGGNCCY 1 cut(s) 292
EcoRI GAATTC 1 cut(s) 486
EcoRII CCWGG 3 cut(s) 288, 739, 1015
Esp3I CGTCTC 2 cut(s) 898, 1322
FaeI CATG 2 cut(s) 1234, 1430
FalI AAGNNNNNCTT 2 cut(s) 1128, 1160
FaqI GGGAC 1 cut(s) 431
FatI CATG 2 cut(s) 1230, 1426
FauI CCCGC 1 cut(s) 163
FbaI TGATCA 1 cut(s) 856
Fnu4HI GCNGC 3 cut(s) 969, 1056, 1142
FokI GGATG 5 cut(s) 610, 616, 727, 866, 1346
Fsp4HI GCNGC 3 cut(s) 969, 1056, 1142
FspBI CTAG 4 cut(s) 684, 996, 1088, 1452
GlaI GCGC 3 cut(s) 159, 253, 348
GluI GCNGC 3 cut(s) 969, 1056, 1142
GsuI CTGGAG 1 cut(s) 460
HaeIII GGCC 3 cut(s) 275, 935, 1015
HapII CCGG 2 cut(s) 372, 883
HgaI GACGC 2 cut(s) 311, 753
HhaI GCGC 3 cut(s) 160, 254, 349
Hin1I GRCGYC 1 cut(s) 303
Hin1II CATG 2 cut(s) 1234, 1430
Hin6I GCGC 3 cut(s) 158, 252, 347
HinP1I GCGC 3 cut(s) 158, 252, 347
HindIII AAGCTT 3 cut(s) 765, 848, 1394
HinfI GANTC 3 cut(s) 168, 332, 749
HpaII CCGG 2 cut(s) 372, 883
HphI GGTGA 6 cut(s) 33, 77, 566, 710, 842, 1106
Hpy166II GTNNAC 2 cut(s) 310, 451
Hpy188I TCNGA 3 cut(s) 385, 492, 898
Hpy188III TCNNGA 7 cut(s) 854, 1088, 1224, 1238, 1271, 1359, 1412
Hpy8I GTNNAC 2 cut(s) 310, 451
Hpy99I CGWCG 1 cut(s) 305
HpyCH4III ACNGT 3 cut(s) 836, 930, 1187
HpyCH4IV ACGT 2 cut(s) 619, 1315
HpyCH4V TGCA 3 cut(s) 607, 1183, 1457
HpyF10VI GCNNNNNNNGC 5 cut(s) 281, 344, 372, 1001, 1147
HpyF3I CTNAG 2 cut(s) 296, 350
HpySE526I ACGT 2 cut(s) 619, 1315
Hsp92I GRCGYC 1 cut(s) 303
Hsp92II CATG 2 cut(s) 1234, 1430
HspAI GCGC 3 cut(s) 158, 252, 347
KpnI GGTACC 1 cut(s) 1191
KroI GCCGGC 1 cut(s) 371
KroNI GCCGGC 1 cut(s) 373
Ksp22I TGATCA 1 cut(s) 856
Kzo9I GATC 5 cut(s) 396, 856, 873, 1198, 1361
LmnI GCTCC 3 cut(s) 101, 145, 385
Lsp1109I GCAGC 3 cut(s) 955, 1042, 1153
LweI GCATC 2 cut(s) 330, 594
MabI ACCWGGT 1 cut(s) 288
MaeI CTAG 4 cut(s) 684, 996, 1088, 1452
MaeII ACGT 2 cut(s) 619, 1315
MaeIII GTNAC 5 cut(s) 257, 356, 830, 1412, 1496
MalI GATC 5 cut(s) 398, 858, 875, 1200, 1363
MboI GATC 5 cut(s) 396, 856, 873, 1198, 1361
MboII GAAGA 8 cut(s) 13, 511, 530, 559, 583, 716, 868, 1334
MflI RGATCY 1 cut(s) 873
MhlI GDGCHC 2 cut(s) 270, 1077
MluCI AATT 4 cut(s) 486, 709, 724, 1276
MlyI GAGTC 3 cut(s) 177, 341, 758
MmeI TCCRAC 1 cut(s) 649
MreI CGCCGGCG 1 cut(s) 371
MroNI GCCGGC 1 cut(s) 371
MseI TTAA 3 cut(s) 785, 821, 1311
MspA1I CMGCKG 1 cut(s) 354
MspI CCGG 2 cut(s) 372, 883
MspR9I CCNGG 4 cut(s) 290, 741, 884, 1017
Mva1269I GAATGC 1 cut(s) 959
MvaI CCWGG 3 cut(s) 290, 741, 1017
MvnI CGCG 6 cut(s) 158, 160, 252, 315, 347, 747
MwoI GCNNNNNNNGC 5 cut(s) 281, 344, 372, 1001, 1147
NaeI GCCGGC 1 cut(s) 373
NciI CCSGG 1 cut(s) 884
NdeII GATC 5 cut(s) 396, 856, 873, 1198, 1361
NgoMIV GCCGGC 1 cut(s) 371
NheI GCTAGC 1 cut(s) 995
NlaIII CATG 2 cut(s) 1234, 1430
NlaIV GGNNCC 2 cut(s) 888, 1189
NmeAIII GCCGAG 1 cut(s) 364
NmuCI GTSAC 4 cut(s) 257, 830, 1412, 1496
NspV TTCGAA 2 cut(s) 473, 728
PaeR7I CTCGAG 1 cut(s) 1029
PctI GAATGC 1 cut(s) 959
PdiI GCCGGC 1 cut(s) 373
PflFI GACNNNGTC 2 cut(s) 167, 290
PflMI CCANNNNNTGG 1 cut(s) 1172
PfoI TCCNGGA 1 cut(s) 739
PkrI GCNGC 3 cut(s) 970, 1057, 1143
PleI GAGTC 3 cut(s) 176, 340, 757
PpsI GAGTC 3 cut(s) 176, 340, 757
PpuMI RGGWCCY 1 cut(s) 292
PshAI GACNNNNGTC 1 cut(s) 748
Psp5II RGGWCCY 1 cut(s) 292
Psp6I CCWGG 3 cut(s) 288, 739, 1015
PspGI CCWGG 3 cut(s) 288, 739, 1015
PspN4I GGNNCC 2 cut(s) 888, 1189
PspPI GGNCC 4 cut(s) 273, 292, 933, 1019
PspPPI RGGWCCY 1 cut(s) 292
PspXI VCTCGAGB 1 cut(s) 1029
PsuI RGATCY 1 cut(s) 873
PsyI GACNNNGTC 2 cut(s) 167, 290
RsaI GTAC 4 cut(s) 469, 906, 1189, 1355
RsaNI GTAC 4 cut(s) 468, 905, 1188, 1354
SaqAI TTAA 3 cut(s) 785, 821, 1311
SatI GCNGC 3 cut(s) 969, 1056, 1142
Sau3AI GATC 5 cut(s) 396, 856, 873, 1198, 1361
Sau96I GGNCC 4 cut(s) 273, 292, 933, 1019
SchI GAGTC 3 cut(s) 177, 341, 758
ScrFI CCNGG 4 cut(s) 290, 741, 884, 1017
SduI GDGCHC 2 cut(s) 270, 1077
SexAI ACCWGGT 1 cut(s) 288
SfaNI GCATC 2 cut(s) 330, 594
Sfr274I CTCGAG 1 cut(s) 1029
SfuI TTCGAA 2 cut(s) 473, 728
SgrAI CRCCGGYG 1 cut(s) 371
SinI GGWCC 2 cut(s) 292, 1019
SlaI CTCGAG 1 cut(s) 1029
SmlI CTYRAG 3 cut(s) 1029, 1145, 1357
SmoI CTYRAG 3 cut(s) 1029, 1145, 1357
Sse9I AATT 4 cut(s) 486, 709, 724, 1276
SsiI CCGC 7 cut(s) 156, 250, 313, 319, 336, 354, 375
SspMI CTAG 4 cut(s) 684, 996, 1088, 1452
StyD4I CCNGG 4 cut(s) 288, 739, 882, 1015
TaaI ACNGT 3 cut(s) 836, 930, 1187
TaiI ACGT 2 cut(s) 622, 1318
TaqI TCGA 6 cut(s) 264, 324, 456, 473, 728, 1030
TasI AATT 4 cut(s) 486, 709, 724, 1276
Tru1I TTAA 3 cut(s) 785, 821, 1311
Tru9I TTAA 3 cut(s) 785, 821, 1311
TscAI CASTG 3 cut(s) 275, 935, 1408
TseFI GTSAC 4 cut(s) 257, 830, 1412, 1496
TseI GCWGC 3 cut(s) 968, 1055, 1141
Tsp45I GTSAC 4 cut(s) 257, 830, 1412, 1496
TspDTI ATGAA 4 cut(s) 717, 828, 868, 1143
TspGWI ACGGA 1 cut(s) 922
TspRI CASTG 3 cut(s) 275, 935, 1408
Tth111I GACNNNGTC 2 cut(s) 167, 290
Van91I CCANNNNNTGG 1 cut(s) 1172
VpaK11BI GGWCC 2 cut(s) 292, 1019
XapI RAATTY 1 cut(s) 486
XbaI TCTAGA 1 cut(s) 1087
XhoI CTCGAG 1 cut(s) 1029
XspI CTAG 4 cut(s) 684, 996, 1088, 1452
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.