Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0004624

Physical Location & Seq

Genomic Coordinates Reverse (-)

64677685 .. 64678728

Gene Structure 1044 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020402

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGACTACCCACAGCACTCTCTTCCACTTCTACCACACTTCACCTTCAAACCCACTCTCCTCCTCCACCACCACTCCACACCTCCACCTCTCCTGCTCTTTCAAACCTAAACCCCCCAAACCCTCCTCCTTCTCCTTCGCTCTCACACCAATACCCGCGCGAGACAGAGTCATAGACTTCGGCAAACACAAGGGCAAAATGCTCGGCACACTCCCCTCCACCTACCTCAAATGGGTCTCCACCAACCTCCGCGCCCGAGACTTCGAGCACTGGGCCAAGCTCGCCGACCAGGTCCTAAGCGACGCCGTTTACCGCGACCGCATCGAGTGGGAGTCCGCCGAGAACGCGCTCAGCTGTAACAGAAGCAACGCCGGCGGAGTTTCGGAGCTTCTGGGGATCAGCGACAGGTTCGGGTGGGACAACGATGACAAAGTTGGCTGGAGTAAAGTGAACTTCGAGCTTTTGGGTACTTCGAAAGGTGGGAGAATTCCGAGGAGGAAGATTGAGACTGAAGTTGCAGAACAGAGTGGTTTGGAGGAGAGAGAGAAGAAGGGTGAGGGTTTAGGGGAGAAGAGGAAGGAAAGGAGGGAGAGAAGGATGAGGATGCAGAGAGAGCAAGGTGGGGTTGGGAAGGAGGAGAAGTTGGGGATTGTGGAGAAGGTTGGAGATAGTTTAGGGAATGGAGTTGGATTAGGGAGGACTAGCAAGGAGAATGTTGATGAAGATAATTGGATGGTGGATAATTCGAAAAAGTTTCCTGGACGCGAGTCTCTGTTGAGGAAAGTTTATAGCAGAAGTATCAATTTTGAATCTCCGTTTGTCCAATCTTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

QSregVF_b

Protein Analysis

278

Amino Acids

31.32

Weight (kDa)

9.39

Isoelectric Point (pI)

37.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004624)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20270 AT3G20270 AT3G20270 AT3G20270 AT3G20270 AT3G20270
fragaria_vesca	FvH4_6g36931 FvH4_6g36931 FvH4_6g36931
malus_domestica	MD09G1165400.v1.1 MD17G1162300.v1.1
prunus_persica	Prupe.3G023100_v2.0.a1
pyrus_communis	pycom09g08280
rosa_chinensis	RchiOBHm_Chr2g0149371 RchiOBHm_Chr2g0149381
rosa_laevigata	RLG00000020396 RLG00000020402
rosa_multiflora	Rmu_co8329327.1_g000001 Rmu_sc0000873.1_g000018 Rmu_sc0006867.1_g000001
rosa_roxburghii	Rroxscaffold_2G00098150 Rroxscaffold_2G00098160
rosa_rugosa	Rorug02G0411900
rosa_samantha	Rh2AG471600 Rh2AG471700 Rh2BG483900 Rh2CG457600 Rh2CG457700 Rh2DG492900 Rh2DG493000
rosa_wichuraiana	Rw2G038380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	6 cut(s)	158, 160, 252, 315, 347, 765
AciI	CCGC	6 cut(s)	156, 250, 313, 319, 336, 375
AclWI	GGATC	1 cut(s)	404
AcsI	RAATTY	1 cut(s)	486
AcuI	CTGAAG	1 cut(s)	531
AcyI	GRCGYC	1 cut(s)	303
AfaI	GTAC	1 cut(s)	469
AfiI	CCNNNNNNNGG	1 cut(s)	232
AgsI	TTSAA	3 cut(s)	48, 103, 809
AjnI	CCWGG	2 cut(s)	288, 757
AluBI	AGCT	4 cut(s)	280, 354, 388, 460
AluI	AGCT	4 cut(s)	280, 354, 388, 460
Alw21I	GWGCWC	1 cut(s)	270
Alw26I	GTCTC	5 cut(s)	156, 241, 252, 500, 774
AlwI	GGATC	1 cut(s)	404
Ama87I	CYCGRG	1 cut(s)	255
AoxI	GGCC	1 cut(s)	273
ApoI	RAATTY	1 cut(s)	486
AspLEI	GCGC	3 cut(s)	160, 254, 349
AspS9I	GGNCC	2 cut(s)	273, 292
AsuHPI	GGTGA	2 cut(s)	33, 566
AsuII	TTCGAA	2 cut(s)	473, 746
AvaI	CYCGRG	1 cut(s)	255
AvaII	GGWCC	1 cut(s)	292
Bbv12I	GWGCWC	1 cut(s)	270
BccI	CCATC	1 cut(s)	727
BceAI	ACGGC	1 cut(s)	290
BcgI	CGANNNNNNTGC	2 cut(s)	184, 218
BciT130I	CCWGG	2 cut(s)	290, 759
BcoDI	GTCTC	5 cut(s)	156, 241, 252, 500, 774
BfaI	CTAG	1 cut(s)	702
BlpI	GCTNAGC	1 cut(s)	350
Bme1390I	CCNGG	2 cut(s)	290, 759
Bme18I	GGWCC	1 cut(s)	292
BmeT110I	CYCGRG	1 cut(s)	255
BmgT120I	GGNCC	2 cut(s)	273, 292
BmrFI	CCNGG	2 cut(s)	290, 759
BmrI	ACTGGG	1 cut(s)	280
BmsI	GCATC	2 cut(s)	330, 594
BmuI	ACTGGG	1 cut(s)	280
BoxI	GACNNNNGTC	1 cut(s)	766
BpmI	CTGGAG	1 cut(s)	460
Bpu10I	CCTNAGC	1 cut(s)	296
Bpu1102I	GCTNAGC	1 cut(s)	350
Bpu14I	TTCGAA	2 cut(s)	473, 746
BsaHI	GRCGYC	1 cut(s)	303
BsaI	GGTCTC	1 cut(s)	241
BsaJI	CCNNGG	1 cut(s)	491
BsaXI	ACNNNNNCTCC	6 cut(s)	41, 58, 71, 88, 626, 656
Bsc4I	CCNNNNNNNGG	1 cut(s)	232
Bse118I	RCCGGY	1 cut(s)	371
Bse1I	ACTGG	1 cut(s)	275
BseBI	CCWGG	2 cut(s)	290, 759
BseDI	CCNNGG	1 cut(s)	491
BseGI	GGATG	3 cut(s)	603, 609, 738
BseLI	CCNNNNNNNGG	1 cut(s)	232
BseMII	CTCAG	1 cut(s)	364
BseNI	ACTGG	1 cut(s)	275
BseRI	GAGGAG	6 cut(s)	49, 52, 115, 508, 551, 650
Bsh1236I	CGCG	6 cut(s)	158, 160, 252, 315, 347, 765
Bsh1285I	CGRYCG	1 cut(s)	319
BshFI	GGCC	1 cut(s)	275
BsiEI	CGRYCG	1 cut(s)	319
BsiHKAI	GWGCWC	1 cut(s)	270
BsiHKCI	CYCGRG	1 cut(s)	255
BsiSI	CCGG	1 cut(s)	372
BslFI	GGGAC	1 cut(s)	431
BslI	CCNNNNNNNGG	1 cut(s)	232
BsmAI	GTCTC	5 cut(s)	156, 241, 252, 500, 774
BsmFI	GGGAC	1 cut(s)	431
BsnI	GGCC	1 cut(s)	275
Bso31I	GGTCTC	1 cut(s)	241
BsoBI	CYCGRG	1 cut(s)	255
Bsp119I	TTCGAA	2 cut(s)	473, 746
Bsp1286I	GDGCHC	1 cut(s)	270
Bsp143I	GATC	1 cut(s)	396
Bsp1720I	GCTNAGC	1 cut(s)	350
BspACI	CCGC	6 cut(s)	156, 250, 313, 319, 336, 375
BspANI	GGCC	1 cut(s)	275
BspCNI	CTCAG	1 cut(s)	363
BspFNI	CGCG	6 cut(s)	158, 160, 252, 315, 347, 765
BspPI	GGATC	1 cut(s)	404
BspT104I	TTCGAA	2 cut(s)	473, 746
BspTNI	GGTCTC	1 cut(s)	241
BsrFI	RCCGGY	1 cut(s)	371
BsrI	ACTGG	1 cut(s)	275
BssAI	RCCGGY	1 cut(s)	371
BssECI	CCNNGG	1 cut(s)	491
BssMI	GATC	1 cut(s)	396
BssNI	GRCGYC	1 cut(s)	303
Bst2UI	CCWGG	2 cut(s)	290, 759
Bst6I	CTCTTC	2 cut(s)	26, 566
BstACI	GRCGYC	1 cut(s)	303
BstBI	TTCGAA	2 cut(s)	473, 746
BstC8I	GCNNGC	2 cut(s)	282, 373
BstDEI	CTNAG	2 cut(s)	296, 350
BstF5I	GGATG	3 cut(s)	603, 609, 738
BstFNI	CGCG	6 cut(s)	158, 160, 252, 315, 347, 765
BstHHI	GCGC	3 cut(s)	160, 254, 349
BstKTI	GATC	1 cut(s)	399
BstMAI	GTCTC	5 cut(s)	156, 241, 252, 500, 774
BstMBI	GATC	1 cut(s)	396
BstMCI	CGRYCG	1 cut(s)	319
BstMWI	GCNNNNNNNGC	4 cut(s)	281, 344, 372, 613
BstNI	CCWGG	2 cut(s)	290, 759
BstPAI	GACNNNNGTC	1 cut(s)	766
BstSCI	CCNGG	2 cut(s)	288, 757
BstUI	CGCG	6 cut(s)	158, 160, 252, 315, 347, 765
BsuRI	GGCC	1 cut(s)	275
BtsCI	GGATG	3 cut(s)	603, 609, 738
BtsIMutI	CAGTG	1 cut(s)	268
Cac8I	GCNNGC	2 cut(s)	282, 373
CfoI	GCGC	3 cut(s)	160, 254, 349
Cfr10I	RCCGGY	1 cut(s)	371
Cfr13I	GGNCC	2 cut(s)	273, 292
CseI	GACGC	2 cut(s)	311, 771
CsiI	ACCWGGT	1 cut(s)	288
Csp6I	GTAC	1 cut(s)	468
CviJI	RGCY	6 cut(s)	275, 280, 354, 388, 438, 460
CviKI_1	RGCY	6 cut(s)	275, 280, 354, 388, 438, 460
CviQI	GTAC	1 cut(s)	468
DdeI	CTNAG	2 cut(s)	296, 350
DpnI	GATC	1 cut(s)	398
DpnII	GATC	1 cut(s)	396
Eam1104I	CTCTTC	2 cut(s)	26, 566
EarI	CTCTTC	2 cut(s)	26, 566
EciI	GGCGGA	2 cut(s)	325, 390
Eco31I	GGTCTC	1 cut(s)	241
Eco47I	GGWCC	1 cut(s)	292
Eco57I	CTGAAG	1 cut(s)	531
Eco88I	CYCGRG	1 cut(s)	255
EcoO109I	RGGNCCY	1 cut(s)	292
EcoRI	GAATTC	1 cut(s)	486
EcoRII	CCWGG	2 cut(s)	288, 757
FaiI	YATR	2 cut(s)	173, 789
FaqI	GGGAC	1 cut(s)	431
FauI	CCCGC	1 cut(s)	163
FokI	GGATG	3 cut(s)	610, 616, 745
FspBI	CTAG	1 cut(s)	702
GlaI	GCGC	3 cut(s)	159, 253, 348
GsuI	CTGGAG	1 cut(s)	460
HaeIII	GGCC	1 cut(s)	275
HapII	CCGG	1 cut(s)	372
HgaI	GACGC	2 cut(s)	311, 771
HhaI	GCGC	3 cut(s)	160, 254, 349
Hin1I	GRCGYC	1 cut(s)	303
Hin6I	GCGC	3 cut(s)	158, 252, 347
HinP1I	GCGC	3 cut(s)	158, 252, 347
HinfI	GANTC	4 cut(s)	168, 332, 767, 809
HpaII	CCGG	1 cut(s)	372
HphI	GGTGA	2 cut(s)	33, 566
Hpy166II	GTNNAC	2 cut(s)	310, 451
Hpy188I	TCNGA	2 cut(s)	385, 492
Hpy8I	GTNNAC	2 cut(s)	310, 451
Hpy99I	CGWCG	1 cut(s)	305
HpyAV	CCTTC	8 cut(s)	54, 139, 145, 544, 571, 588, 625, 652
HpyCH4V	TGCA	2 cut(s)	518, 607
HpyF10VI	GCNNNNNNNGC	4 cut(s)	281, 344, 372, 613
HpyF3I	CTNAG	2 cut(s)	296, 350
Hsp92I	GRCGYC	1 cut(s)	303
HspAI	GCGC	3 cut(s)	158, 252, 347
KroI	GCCGGC	1 cut(s)	371
KroNI	GCCGGC	1 cut(s)	373
Kzo9I	GATC	1 cut(s)	396
LmnI	GCTCC	1 cut(s)	385
LweI	GCATC	2 cut(s)	330, 594
MabI	ACCWGGT	1 cut(s)	288
MaeI	CTAG	1 cut(s)	702
MaeIII	GTNAC	1 cut(s)	356
MalI	GATC	1 cut(s)	398
MboI	GATC	1 cut(s)	396
MboII	GAAGA	5 cut(s)	13, 511, 559, 583, 734
MhlI	GDGCHC	1 cut(s)	270
MluCI	AATT	4 cut(s)	486, 727, 742, 802
MlyI	GAGTC	3 cut(s)	177, 341, 776
MmeI	TCCRAC	2 cut(s)	643, 667
MreI	CGCCGGCG	1 cut(s)	371
MroNI	GCCGGC	1 cut(s)	371
MseI	TTAA	1 cut(s)	832
MspA1I	CMGCKG	1 cut(s)	354
MspI	CCGG	1 cut(s)	372
MspR9I	CCNGG	2 cut(s)	290, 759
MvaI	CCWGG	2 cut(s)	290, 759
MvnI	CGCG	6 cut(s)	158, 160, 252, 315, 347, 765
MwoI	GCNNNNNNNGC	4 cut(s)	281, 344, 372, 613
NaeI	GCCGGC	1 cut(s)	373
NdeII	GATC	1 cut(s)	396
NgoMIV	GCCGGC	1 cut(s)	371
NmeAIII	GCCGAG	2 cut(s)	183, 364
NspV	TTCGAA	2 cut(s)	473, 746
PdiI	GCCGGC	1 cut(s)	373
PfeI	GAWTC	1 cut(s)	809
PflFI	GACNNNGTC	2 cut(s)	167, 290
PfoI	TCCNGGA	1 cut(s)	757
PleI	GAGTC	3 cut(s)	176, 340, 775
PpsI	GAGTC	3 cut(s)	176, 340, 775
PpuMI	RGGWCCY	1 cut(s)	292
PshAI	GACNNNNGTC	1 cut(s)	766
Psp5II	RGGWCCY	1 cut(s)	292
Psp6I	CCWGG	2 cut(s)	288, 757
PspGI	CCWGG	2 cut(s)	288, 757
PspPI	GGNCC	2 cut(s)	273, 292
PspPPI	RGGWCCY	1 cut(s)	292
PsyI	GACNNNGTC	2 cut(s)	167, 290
PvuII	CAGCTG	1 cut(s)	354
RsaI	GTAC	1 cut(s)	469
RsaNI	GTAC	1 cut(s)	468
SaqAI	TTAA	1 cut(s)	832
Sau3AI	GATC	1 cut(s)	396
Sau96I	GGNCC	2 cut(s)	273, 292
SchI	GAGTC	3 cut(s)	177, 341, 776
ScrFI	CCNGG	2 cut(s)	290, 759
SduI	GDGCHC	1 cut(s)	270
SexAI	ACCWGGT	1 cut(s)	288
SfaNI	GCATC	2 cut(s)	330, 594
SfuI	TTCGAA	2 cut(s)	473, 746
SgrAI	CRCCGGYG	1 cut(s)	371
SinI	GGWCC	1 cut(s)	292
Sse9I	AATT	4 cut(s)	486, 727, 742, 802
SsiI	CCGC	6 cut(s)	156, 250, 313, 319, 336, 375
SspMI	CTAG	1 cut(s)	702
StyD4I	CCNGG	2 cut(s)	288, 757
TaqI	TCGA	5 cut(s)	264, 324, 456, 473, 746
TasI	AATT	4 cut(s)	486, 727, 742, 802
TfiI	GAWTC	1 cut(s)	809
Tru1I	TTAA	1 cut(s)	832
Tru9I	TTAA	1 cut(s)	832
TscAI	CASTG	1 cut(s)	275
TspDTI	ATGAA	1 cut(s)	735
TspGWI	ACGGA	1 cut(s)	804
TspRI	CASTG	1 cut(s)	275
Tth111I	GACNNNGTC	2 cut(s)	167, 290
VpaK11BI	GGWCC	1 cut(s)	292
XapI	RAATTY	1 cut(s)	486
XspI	CTAG	1 cut(s)	702

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.