Rmu_sc0006867.1_g000001

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006867.1
Physical Location & Seq
Reverse (-)
1 .. 6030
6030 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006867.1_g000001.1.cds

Sequence Viewer

Length: 1489 bp
atgactacccacagcactctcttcaacttccaccacactgcaccttcaaacccactctcctcctccaccaccactccacacctcaacctctcctgctccttcaaacccaaaccccccaaaccctcctccttctccttcgctcccacaccaatacccgcacgagacagagtcatagacttcggcaaacacaagggaaaaatgcttggcacactcccttccacctacctcaaatgggtctccaccaacctccgcgcccgcgacttcgagcactgggccaagctcgccgaccaggtcctaagcgacgccgtttaccgcgaccgcatcgagtgggagtccgccgagaatgcgctcagcggtaacagaagcaacgccggcggagtttcggagcttctggggatcagcgacaggttcgggtgggacaacgatgacaaagttggctggagtaaagtgaacttcgagcttttgggtacttcgaaaggtgggagaattccgaggaggaagagtgagactgaagttgcagaacagagtggtttggaggagagagagaagaagggtgagggtttaggggagaagaggagggaaaggagggagaggaggatgaggatgcagagagtggaacgtggggttgggaaggaggagaaggttgggggtagtttagggaatggagttggattagggaggactagcaaggagaatggtaatgaagataattggatggtggataattcgaaaaagtttcctggacgcgagtctttgttgaggaaagcttatagcagaagaacgctaatgacaaataataaagaaaatgacaccttaacatcaggtgacagttcatttggaaagcttcctgatcatctcctaatagagatcttcatccgggttcccgtctctgaatgggtacgggtatgctgtgtaagaaaacagtgggccaatctttttcgtggagaatgcttgtggcgagctgctctatctacgacatttcctttggctagcaaagctaaaagttggcctggacctatccctcgaggtttgagcaagaggagatttgctgctttatatgttagtgagcacatctttgctctagatggtgagattgatgagatagtggggcatacttatttgtttctaaaagagcagcttgagctttcatctatgcctccaccatctggtattttgcacggtaccataatagatcagtttattgcttgtggtaaatcaagagacatggctcacgagcttgcttcccagatatggttggctgttcttgacaatttagaggaaaccgaacacacttttcaaatacttaaacgtctcgcacaagagggggatgtttttcttccatacccgtactcaagatcaatcaaagtccaatggaaggtgtttgaaaagcttttcactgattttcgtgactgcctcaaccatgtggattactatgatgtcttggctagtgcaaagaacaagtttcagccaataccatctacttggttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

496

Amino Acids

56.26

Weight (kDa)

9.22

Isoelectric Point (pI)

38.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 1023
Acc65I GGTACC 1 cut(s) 1181
AccB1I GGYRCC 1 cut(s) 1181
AccB7I CCANNNNNTGG 1 cut(s) 1166
AccII CGCG 4 cut(s) 252, 258, 315, 747
AciI CCGC 8 cut(s) 156, 250, 256, 313, 319, 336, 354, 375
AclWI GGATC 1 cut(s) 404
AcsI RAATTY 1 cut(s) 486
AcuI CTGAAG 1 cut(s) 531
AcyI GRCGYC 1 cut(s) 303
AfaI GTAC 4 cut(s) 469, 900, 1183, 1349
AfiI CCNNNNNNNGG 4 cut(s) 232, 1166, 1251, 1375
AgsI TTSAA 5 cut(s) 25, 48, 103, 1298, 1385
AjnI CCWGG 3 cut(s) 288, 739, 1009
AjuI GAANNNNNNNTTGG 2 cut(s) 609, 641
Alw21I GWGCWC 2 cut(s) 270, 1071
Alw26I GTCTC 6 cut(s) 156, 241, 500, 892, 1215, 1316
AlwI GGATC 1 cut(s) 404
Ama87I CYCGRG 1 cut(s) 1023
AoxI GGCC 3 cut(s) 273, 927, 1007
ApeKI GCWGC 3 cut(s) 962, 1049, 1135
ApoI RAATTY 1 cut(s) 486
ArsI GACNNNNNNTTYG 4 cut(s) 818, 850, 967, 999
Asp718I GGTACC 1 cut(s) 1181
AspLEI GCGC 2 cut(s) 254, 349
AspS9I GGNCC 4 cut(s) 273, 292, 927, 1013
AsuC2I CCSGG 1 cut(s) 878
AsuHPI GGTGA 3 cut(s) 566, 836, 1100
AsuII TTCGAA 2 cut(s) 473, 728
AsuNHI GCTAGC 1 cut(s) 989
AvaI CYCGRG 1 cut(s) 1023
AvaII GGWCC 2 cut(s) 292, 1013
BanI GGYRCC 1 cut(s) 1181
BauI CACGAG 2 cut(s) 159, 1232
Bbv12I GWGCWC 2 cut(s) 270, 1071
BbvI GCAGC 3 cut(s) 949, 1036, 1147
BccI CCATC 4 cut(s) 709, 1079, 1171, 1483
BceAI ACGGC 1 cut(s) 290
BciT130I CCWGG 3 cut(s) 290, 741, 1011
BclI TGATCA 1 cut(s) 850
BcnI CCSGG 1 cut(s) 878
BcoDI GTCTC 6 cut(s) 156, 241, 500, 892, 1215, 1316
BfaI CTAG 4 cut(s) 684, 990, 1082, 1446
BglII AGATCT 1 cut(s) 867
BisI GCNGC 3 cut(s) 963, 1050, 1136
BlpI GCTNAGC 1 cut(s) 350
BlsI GCNGC 3 cut(s) 964, 1051, 1137
Bme1390I CCNGG 4 cut(s) 290, 741, 878, 1011
Bme18I GGWCC 2 cut(s) 292, 1013
BmeT110I CYCGRG 1 cut(s) 1023
BmgT120I GGNCC 4 cut(s) 273, 292, 927, 1013
BmiI GGNNCC 2 cut(s) 882, 1183
BmrFI CCNGG 4 cut(s) 290, 741, 878, 1011
BmrI ACTGGG 1 cut(s) 280
BmsI GCATC 2 cut(s) 330, 594
BmtI GCTAGC 1 cut(s) 993
BmuI ACTGGG 1 cut(s) 280
BoxI GACNNNNGTC 1 cut(s) 748
BpmI CTGGAG 1 cut(s) 460
Bpu10I CCTNAGC 1 cut(s) 296
Bpu1102I GCTNAGC 1 cut(s) 350
Bpu14I TTCGAA 2 cut(s) 473, 728
BpuEI CTTGAG 2 cut(s) 1160, 1336
BpuMI CCSGG 1 cut(s) 878
BsaBI GATNNNNATC 1 cut(s) 872
BsaHI GRCGYC 1 cut(s) 303
BsaI GGTCTC 1 cut(s) 241
BsaJI CCNNGG 1 cut(s) 491
BsaXI ACNNNNNCTCC 6 cut(s) 41, 58, 71, 88, 487, 517
Bsc4I CCNNNNNNNGG 4 cut(s) 232, 1166, 1251, 1375
Bse118I RCCGGY 1 cut(s) 371
Bse1I ACTGG 1 cut(s) 275
Bse8I GATNNNNATC 1 cut(s) 872
BseBI CCWGG 3 cut(s) 290, 741, 1011
BseDI CCNNGG 1 cut(s) 491
BseGI GGATG 5 cut(s) 603, 609, 720, 873, 1333
BseJI GATNNNNATC 1 cut(s) 872
BseLI CCNNNNNNNGG 4 cut(s) 232, 1166, 1251, 1375
BseMII CTCAG 1 cut(s) 364
BseNI ACTGG 1 cut(s) 275
BseRI GAGGAG 9 cut(s) 49, 52, 115, 508, 551, 589, 607, 650, 1054
BseXI GCAGC 3 cut(s) 949, 1036, 1147
BsgI GTGCAG 1 cut(s) 24
Bsh1236I CGCG 4 cut(s) 252, 258, 315, 747
Bsh1285I CGRYCG 1 cut(s) 319
BshFI GGCC 3 cut(s) 275, 929, 1009
BshNI GGYRCC 1 cut(s) 1181
BsiEI CGRYCG 1 cut(s) 319
BsiHKAI GWGCWC 2 cut(s) 270, 1071
BsiHKCI CYCGRG 1 cut(s) 1023
BsiSI CCGG 2 cut(s) 372, 877
BslFI GGGAC 1 cut(s) 431
BslI CCNNNNNNNGG 4 cut(s) 232, 1166, 1251, 1375
BsmAI GTCTC 6 cut(s) 156, 241, 500, 892, 1215, 1316
BsmBI CGTCTC 2 cut(s) 892, 1316
BsmFI GGGAC 1 cut(s) 431
BsmI GAATGC 2 cut(s) 349, 953
BsnI GGCC 3 cut(s) 275, 929, 1009
Bso31I GGTCTC 1 cut(s) 241
BsoBI CYCGRG 1 cut(s) 1023
Bsp119I TTCGAA 2 cut(s) 473, 728
Bsp1286I GDGCHC 2 cut(s) 270, 1071
Bsp143I GATC 5 cut(s) 396, 850, 867, 1192, 1355
Bsp1720I GCTNAGC 1 cut(s) 350
BspACI CCGC 8 cut(s) 156, 250, 256, 313, 319, 336, 354, 375
BspANI GGCC 3 cut(s) 275, 929, 1009
BspCNI CTCAG 1 cut(s) 363
BspFNI CGCG 4 cut(s) 252, 258, 315, 747
BspLI GGNNCC 2 cut(s) 882, 1183
BspOI GCTAGC 1 cut(s) 993
BspPI GGATC 1 cut(s) 404
BspT104I TTCGAA 2 cut(s) 473, 728
BspT107I GGYRCC 1 cut(s) 1181
BspTNI GGTCTC 1 cut(s) 241
BsrFI RCCGGY 1 cut(s) 371
BsrI ACTGG 1 cut(s) 275
BssAI RCCGGY 1 cut(s) 371
BssECI CCNNGG 1 cut(s) 491
BssMI GATC 5 cut(s) 396, 850, 867, 1192, 1355
BssNI GRCGYC 1 cut(s) 303
BssSI CACGAG 2 cut(s) 159, 1232
Bst2BI CACGAG 2 cut(s) 159, 1232
Bst2UI CCWGG 3 cut(s) 290, 741, 1011
Bst4CI ACNGT 3 cut(s) 830, 924, 1181
Bst6I CTCTTC 3 cut(s) 26, 494, 566
BstACI GRCGYC 1 cut(s) 303
BstBI TTCGAA 2 cut(s) 473, 728
BstC8I GCNNGC 6 cut(s) 256, 282, 373, 960, 991, 1239
BstDEI CTNAG 2 cut(s) 296, 350
BstF5I GGATG 5 cut(s) 603, 609, 720, 873, 1333
BstFNI CGCG 4 cut(s) 252, 258, 315, 747
BstHHI GCGC 2 cut(s) 254, 349
BstKTI GATC 5 cut(s) 399, 853, 870, 1195, 1358
BstMAI GTCTC 6 cut(s) 156, 241, 500, 892, 1215, 1316
BstMBI GATC 5 cut(s) 396, 850, 867, 1192, 1355
BstMCI CGRYCG 1 cut(s) 319
BstMWI GCNNNNNNNGC 5 cut(s) 281, 344, 372, 995, 1141
BstNI CCWGG 3 cut(s) 290, 741, 1011
BstPAI GACNNNNGTC 1 cut(s) 748
BstSCI CCNGG 4 cut(s) 288, 739, 876, 1009
BstUI CGCG 4 cut(s) 252, 258, 315, 747
BstV1I GCAGC 3 cut(s) 949, 1036, 1147
BstX2I RGATCY 1 cut(s) 867
BstXI CCANNNNNNTGG 1 cut(s) 1482
BstYI RGATCY 1 cut(s) 867
BsuRI GGCC 3 cut(s) 275, 929, 1009
BtsCI GGATG 5 cut(s) 603, 609, 720, 873, 1333
BtsI GCAGTG 1 cut(s) 36
BtsIMutI CAGTG 4 cut(s) 36, 268, 929, 1395
Cac8I GCNNGC 6 cut(s) 256, 282, 373, 960, 991, 1239
CfoI GCGC 2 cut(s) 254, 349
Cfr10I RCCGGY 1 cut(s) 371
Cfr13I GGNCC 4 cut(s) 273, 292, 927, 1013
CseI GACGC 2 cut(s) 311, 753
CsiI ACCWGGT 1 cut(s) 288
Csp6I GTAC 4 cut(s) 468, 899, 1182, 1348
CviAII CATG 2 cut(s) 1225, 1421
CviQI GTAC 4 cut(s) 468, 899, 1182, 1348
DdeI CTNAG 2 cut(s) 296, 350
DpnI GATC 5 cut(s) 398, 852, 869, 1194, 1357
DpnII GATC 5 cut(s) 396, 850, 867, 1192, 1355
Eam1104I CTCTTC 3 cut(s) 26, 494, 566
EarI CTCTTC 3 cut(s) 26, 494, 566
EciI GGCGGA 2 cut(s) 325, 390
Eco31I GGTCTC 1 cut(s) 241
Eco47I GGWCC 2 cut(s) 292, 1013
Eco57I CTGAAG 1 cut(s) 531
Eco88I CYCGRG 1 cut(s) 1023
EcoO109I RGGNCCY 1 cut(s) 292
EcoRI GAATTC 1 cut(s) 486
EcoRII CCWGG 3 cut(s) 288, 739, 1009
Esp3I CGTCTC 2 cut(s) 892, 1316
FaeI CATG 2 cut(s) 1228, 1424
FalI AAGNNNNNCTT 2 cut(s) 1122, 1154
FaqI GGGAC 1 cut(s) 431
FatI CATG 2 cut(s) 1224, 1420
FauI CCCGC 2 cut(s) 163, 263
FbaI TGATCA 1 cut(s) 850
Fnu4HI GCNGC 3 cut(s) 963, 1050, 1136
FokI GGATG 5 cut(s) 610, 616, 727, 860, 1340
Fsp4HI GCNGC 3 cut(s) 963, 1050, 1136
FspBI CTAG 4 cut(s) 684, 990, 1082, 1446
GlaI GCGC 2 cut(s) 253, 348
GluI GCNGC 3 cut(s) 963, 1050, 1136
GsuI CTGGAG 1 cut(s) 460
HaeIII GGCC 3 cut(s) 275, 929, 1009
HapII CCGG 2 cut(s) 372, 877
HgaI GACGC 2 cut(s) 311, 753
HhaI GCGC 2 cut(s) 254, 349
Hin1I GRCGYC 1 cut(s) 303
Hin1II CATG 2 cut(s) 1228, 1424
Hin6I GCGC 2 cut(s) 252, 347
HinP1I GCGC 2 cut(s) 252, 347
HindIII AAGCTT 3 cut(s) 765, 842, 1388
HinfI GANTC 3 cut(s) 168, 332, 749
HpaII CCGG 2 cut(s) 372, 877
HphI GGTGA 3 cut(s) 566, 836, 1100
Hpy166II GTNNAC 2 cut(s) 310, 451
Hpy188I TCNGA 3 cut(s) 385, 492, 892
Hpy188III TCNNGA 7 cut(s) 848, 1082, 1218, 1232, 1265, 1353, 1406
Hpy8I GTNNAC 2 cut(s) 310, 451
Hpy99I CGWCG 1 cut(s) 305
HpyAV CCTTC 9 cut(s) 54, 109, 139, 145, 225, 544, 625, 634, 1369
HpyCH4III ACNGT 3 cut(s) 830, 924, 1181
HpyCH4IV ACGT 2 cut(s) 619, 1309
HpyCH4V TGCA 5 cut(s) 41, 518, 607, 1177, 1451
HpyF10VI GCNNNNNNNGC 5 cut(s) 281, 344, 372, 995, 1141
HpyF3I CTNAG 2 cut(s) 296, 350
HpySE526I ACGT 2 cut(s) 619, 1309
Hsp92I GRCGYC 1 cut(s) 303
Hsp92II CATG 2 cut(s) 1228, 1424
HspAI GCGC 2 cut(s) 252, 347
KpnI GGTACC 1 cut(s) 1185
KroI GCCGGC 1 cut(s) 371
KroNI GCCGGC 1 cut(s) 373
Ksp22I TGATCA 1 cut(s) 850
Kzo9I GATC 5 cut(s) 396, 850, 867, 1192, 1355
LmnI GCTCC 3 cut(s) 101, 145, 385
Lsp1109I GCAGC 3 cut(s) 949, 1036, 1147
LweI GCATC 2 cut(s) 330, 594
MabI ACCWGGT 1 cut(s) 288
MaeI CTAG 4 cut(s) 684, 990, 1082, 1446
MaeII ACGT 2 cut(s) 619, 1309
MaeIII GTNAC 3 cut(s) 356, 824, 1406
MalI GATC 5 cut(s) 398, 852, 869, 1194, 1357
MboI GATC 5 cut(s) 396, 850, 867, 1192, 1355
MboII GAAGA 8 cut(s) 13, 511, 559, 583, 716, 789, 862, 1328
MflI RGATCY 1 cut(s) 867
MhlI GDGCHC 2 cut(s) 270, 1071
MluCI AATT 4 cut(s) 486, 709, 724, 1270
MlyI GAGTC 3 cut(s) 177, 341, 758
MmeI TCCRAC 1 cut(s) 649
MreI CGCCGGCG 1 cut(s) 371
MroNI GCCGGC 1 cut(s) 371
MseI TTAA 2 cut(s) 815, 1305
MspA1I CMGCKG 1 cut(s) 354
MspI CCGG 2 cut(s) 372, 877
MspR9I CCNGG 4 cut(s) 290, 741, 878, 1011
Mva1269I GAATGC 2 cut(s) 349, 953
MvaI CCWGG 3 cut(s) 290, 741, 1011
MvnI CGCG 4 cut(s) 252, 258, 315, 747
MwoI GCNNNNNNNGC 5 cut(s) 281, 344, 372, 995, 1141
NaeI GCCGGC 1 cut(s) 373
NciI CCSGG 1 cut(s) 878
NdeII GATC 5 cut(s) 396, 850, 867, 1192, 1355
NgoMIV GCCGGC 1 cut(s) 371
NheI GCTAGC 1 cut(s) 989
NlaIII CATG 2 cut(s) 1228, 1424
NlaIV GGNNCC 2 cut(s) 882, 1183
NmeAIII GCCGAG 1 cut(s) 364
NmuCI GTSAC 2 cut(s) 824, 1406
NspV TTCGAA 2 cut(s) 473, 728
PaeR7I CTCGAG 1 cut(s) 1023
PctI GAATGC 2 cut(s) 349, 953
PdiI GCCGGC 1 cut(s) 373
PflFI GACNNNGTC 2 cut(s) 167, 290
PflMI CCANNNNNTGG 1 cut(s) 1166
PfoI TCCNGGA 1 cut(s) 739
PkrI GCNGC 3 cut(s) 964, 1051, 1137
PleI GAGTC 3 cut(s) 176, 340, 757
PpsI GAGTC 3 cut(s) 176, 340, 757
PpuMI RGGWCCY 1 cut(s) 292
PshAI GACNNNNGTC 1 cut(s) 748
Psp5II RGGWCCY 1 cut(s) 292
Psp6I CCWGG 3 cut(s) 288, 739, 1009
PspGI CCWGG 3 cut(s) 288, 739, 1009
PspN4I GGNNCC 2 cut(s) 882, 1183
PspPI GGNCC 4 cut(s) 273, 292, 927, 1013
PspPPI RGGWCCY 1 cut(s) 292
PspXI VCTCGAGB 1 cut(s) 1023
PsuI RGATCY 1 cut(s) 867
PsyI GACNNNGTC 2 cut(s) 167, 290
RsaI GTAC 4 cut(s) 469, 900, 1183, 1349
RsaNI GTAC 4 cut(s) 468, 899, 1182, 1348
SaqAI TTAA 2 cut(s) 815, 1305
SatI GCNGC 3 cut(s) 963, 1050, 1136
Sau3AI GATC 5 cut(s) 396, 850, 867, 1192, 1355
Sau96I GGNCC 4 cut(s) 273, 292, 927, 1013
SchI GAGTC 3 cut(s) 177, 341, 758
ScrFI CCNGG 4 cut(s) 290, 741, 878, 1011
SduI GDGCHC 2 cut(s) 270, 1071
SexAI ACCWGGT 1 cut(s) 288
SfaNI GCATC 2 cut(s) 330, 594
Sfr274I CTCGAG 1 cut(s) 1023
SfuI TTCGAA 2 cut(s) 473, 728
SgrAI CRCCGGYG 1 cut(s) 371
SinI GGWCC 2 cut(s) 292, 1013
SlaI CTCGAG 1 cut(s) 1023
SmlI CTYRAG 3 cut(s) 1023, 1139, 1351
SmoI CTYRAG 3 cut(s) 1023, 1139, 1351
Sse9I AATT 4 cut(s) 486, 709, 724, 1270
SsiI CCGC 8 cut(s) 156, 250, 256, 313, 319, 336, 354, 375
SspMI CTAG 4 cut(s) 684, 990, 1082, 1446
StyD4I CCNGG 4 cut(s) 288, 739, 876, 1009
TaaI ACNGT 3 cut(s) 830, 924, 1181
TaiI ACGT 2 cut(s) 622, 1312
TaqI TCGA 6 cut(s) 264, 324, 456, 473, 728, 1024
TasI AATT 4 cut(s) 486, 709, 724, 1270
Tru1I TTAA 2 cut(s) 815, 1305
Tru9I TTAA 2 cut(s) 815, 1305
TscAI CASTG 4 cut(s) 43, 275, 929, 1402
TseFI GTSAC 2 cut(s) 824, 1406
TseI GCWGC 3 cut(s) 962, 1049, 1135
Tsp45I GTSAC 2 cut(s) 824, 1406
TspDTI ATGAA 4 cut(s) 717, 822, 862, 1137
TspRI CASTG 4 cut(s) 43, 275, 929, 1402
Tth111I GACNNNGTC 2 cut(s) 167, 290
Van91I CCANNNNNTGG 1 cut(s) 1166
VpaK11BI GGWCC 2 cut(s) 292, 1013
XapI RAATTY 1 cut(s) 486
XbaI TCTAGA 1 cut(s) 1081
XhoI CTCGAG 1 cut(s) 1023
XspI CTAG 4 cut(s) 684, 990, 1082, 1446
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.