Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0004624

Physical Location & Seq

Genomic Coordinates Reverse (-)

52794544 .. 52799840

Gene Structure 5297 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0411900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2700 bp

ATGGTGTCAGCAGCCTGTGACATCAACCCTACACAAAGGCCTCATTCACTGTTCTCAAAGCCTCCTGCACATTTGTCTCACTTACTGGCTATTTTGGCTTTGATCTTGGCACATTGGCTTCACTTTGTGCAGGGACAAGACTTATATGACTTTGACCAAATTGACAACCCTACTGTTCTTCCACTCATCACACAGATTGTGTATGGTCGCATCTCCAATGCCACAGCAATTCTCAGTCGGGATTTTAGCAACCATTCCAGCTTCTGTGTTAAAGACCCGGAAGCTGATTGGAACCAGGCATTTAACTTTTCGTCGAATCTGGATTTCTTAATTTCATGCATTCAAAAGACGAAAGGAGATATTACACAGCGTTTGTGTACAGCAGCAGAGATGAAATTCTACTTTGAAAGTTTATTTGAAAAATCTGAGAGCGCAAATTACTTGAAGCCTAACAAAAATTGTAATTTTACCTCATGGATTTCGGGGTGTGAGCCTGGATGGGCTTGTAGCAGTGTCCAGAATCAGCATGTTGACCTTCAAAATTCAGACAGCATTCTTGCAAGAACTCACAACTGCCAGCCTTGTTGTGACGGTTTCTTCTGTCCACACGGTCTTACTTGCATGATACCTTGTCCATCGGGTTCTTATTGTCCCCTGGCAACACTGGACAAAACGACTGGTGTTTGTGAACCATACAAATACCAACTACCTCCAGGGAAACCAAACCATACTTGTGGAGGAGCAAACGTATGGGCTGATGTTGGTACTACTAGTGAAGTATTCTGTCCAGTTGGATCATATTGTCCAACAACTGTTAAAAAAATTCCTTGTAGTAGTGGACACTACTGCAAGATGGGTTCTACCTCTGAGAAACGCTGCTTTAGGCTGACTTCATGTAATCAAAGCACTCCAAGTCAAAGCAGTTATGTATACGGAATAATGCTTATTGCAGCTCTAAGTACTCTTCTACTTATTGTTTACAATTTTTCCTACCAAGTTCTCACCACTAGGAACAGGACACTGGCCAAATCCCGGGAGGCGGCAGCAAAATATGCAAGTAAGATAGCAATGTCACGCCAAAGATGGAAGTCTGCTACAGACGCTGCTAAGAATTTTGCTAGTGGATTGCCAGCTCATTTATCACCCAAGTTTTCTCGGAAAAAGGACATCCCAGGTGCACCTCTGCATCCAAGTGCATTCTCTGCTGCTTTGTTCTCACCTATGCCATCAAAAGGAAAGCAAGAGGAGTCTAGTGAGCTCATCCAGATGAGCGACACTGAAGACAATCCAGAGAGTTTCGAAGGTTTTATATTTGGACCTGAGGATACAATTGTAGGAAATGTGTCAAGAGGAAAATTAACACGTACTCATGATCAGATATTCAAGTATGCTTATACTCAACTTGAGAAAGAGAAGGCTCTGCAGCAAGACTACAAGGACCTTGCCTTACCTGGGGTGGTTAAAATGGCCAATAATATTCAGACAAGGAAAAGGCCTCTGATGGAGATTTATTTTAAAGACCTTGCACTTACTTTGAAAGCGCAAAATAAACATATACTGAGATGTGTAACTGGTAAAATAAAGCCTGGCTGCATTACTGCAGTCATGGGTCCGTCAGGTGCTGGAAAAACAACATTTATTTCTGCTCTAGCTGGAAAAGCAATTGGATGCAAGGTGACTGGTCTAATTCTTATAAATGGAAAGAATGAATCAATCCATTCGTATAAAAGAATCCTAGGTTTTGTGCCGCAAGATGATATTGTGCACGGAAACTTGACAGTGGAAGAGAATTTGTTGTTCAGTGCAAAGTGCAGATTGTCAGCGGACTTATCAAAAGCAGATGAATTCCTAGTGACTGAAAGAGTTATCGAGTCCTTGGGCCTTCAGACAGTACGCAATTCCTTGGTTGGAACTGTAGAGAAGCGAGGAATTTCTGGAGGAGAGAGGAAACGTGTGAATGTTGGCGTGGAAATGGTTATGGAACCTTCACTTTTGATTTTGGATGAACCCACATCAGGGTTAGACAGTGCCTCTTCTCAGCTACTTCTTAGAGCACTTAGATGGGAAGCTCTTGAAGGGGTAAACATTTGCATGGTGGTTCACCAACCTAGTTATGCATTATTCAAGATGTTTGATGATCTGGTACTCCTGGCAAAAGGAGGCCTTACTGTCTTTCATGGATCAGCAGAGAAAGTTGAAGAATACTTTGCAGGCCTTGGGATCAATGTCCCAGACCGGATCAATCCTCCGGACTACTTTATTGACATTTTGGAGGGAATAGTAACAACAGAACGCAGCTCAAGTGTAAACTATAAAGAGCTTCCTATAAGATGGATGCTTCATAAGGGGTACTCAGTACCCCCTGATATGTGGCATAGTACTGCTGGACTTGCATTGTCCTCAACCGGTGGAAATTCAATTGATGAAACAAATATTGCTGCTGCTGAAATGGAGGAACCATCTTTTTCAGCAAGTCTACGGAAATACATAAAAACTAATATGGAATTGCATTGTGATTCAATATGGCTCAATTTCTTGAAATCCAATGATTTATCAAACCGTAGAACTCCAGGAGTACTTCAGCAATACAGATACTTCCTCTGCAGAGTCAGTAAGCAGAGACTTCGAGAAGCTCGAATACAAGCAGTGGATTATCTGATTTTATTACTTGCTGGTAGGCCTGGCAATGTGCGGGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

899

Amino Acids

99.42

Weight (kDa)

8.48

Isoelectric Point (pI)

42.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	523 - 672	2.6e-22	ABC transporter
ABC2_membrane_7	PF19055	701 - 892	6.3e-85	ABC-2 type transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004624)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20270 AT3G20270 AT3G20270 AT3G20270 AT3G20270 AT3G20270
fragaria_vesca	FvH4_6g36931 FvH4_6g36931 FvH4_6g36931
malus_domestica	MD09G1165400.v1.1 MD17G1162300.v1.1
prunus_persica	Prupe.3G023100_v2.0.a1
pyrus_communis	pycom09g08280
rosa_chinensis	RchiOBHm_Chr2g0149371 RchiOBHm_Chr2g0149381
rosa_laevigata	RLG00000020396 RLG00000020402
rosa_multiflora	Rmu_co8329327.1_g000001 Rmu_sc0000873.1_g000018 Rmu_sc0006867.1_g000001
rosa_roxburghii	Rroxscaffold_2G00098150 Rroxscaffold_2G00098160
rosa_rugosa	Rorug02G0411900
rosa_samantha	Rh2AG471600 Rh2AG471700 Rh2BG483900 Rh2CG457600 Rh2CG457700 Rh2DG492900 Rh2DG493000
rosa_wichuraiana	Rw2G038380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1694
AccI	GTMKAC	2 cut(s)	930, 2476
AccIII	TCCGGA	1 cut(s)	2248
AciI	CCGC	4 cut(s)	1040, 1748, 1823, 2692
AclWI	GGATC	4 cut(s)	802, 2188, 2228, 2246
AcoI	YGGCCR	2 cut(s)	1023, 1467
AcsI	RAATTY	8 cut(s)	395, 541, 822, 1111, 1789, 1844, 1929, 2413
AcuI	CTGAAG	3 cut(s)	1299, 1868, 2564
AdeI	CACNNNGTG	1 cut(s)	127
AfiI	CCNNNNNNNGG	6 cut(s)	1032, 1039, 1232, 1452, 2015, 2016
AflIII	ACRYGT	2 cut(s)	1361, 1951
AgeI	ACCGGT	1 cut(s)	2405
AhlI	ACTAGT	1 cut(s)	770
Alw21I	GWGCWC	4 cut(s)	1180, 1260, 1767, 2056
Alw26I	GTCTC	2 cut(s)	81, 2614
Alw44I	GTGCAC	2 cut(s)	1176, 1763
AlwI	GGATC	4 cut(s)	802, 2188, 2228, 2246
AlwNI	CAGNNNCTG	3 cut(s)	264, 1103, 1622
Ama87I	CYCGRG	1 cut(s)	1032
Aor13HI	TCCGGA	1 cut(s)	2248
AoxI	GGCC	8 cut(s)	38, 1023, 1467, 1493, 1879, 2161, 2212, 2678
ApaLI	GTGCAC	2 cut(s)	1176, 1763
ApoI	RAATTY	8 cut(s)	395, 541, 822, 1111, 1789, 1844, 1929, 2413
AsiGI	ACCGGT	1 cut(s)	2405
AspA2I	CCTAGG	1 cut(s)	1735
AspLEI	GCGC	2 cut(s)	434, 1543
AspS9I	GGNCC	4 cut(s)	1316, 1438, 1610, 1879
AsuC2I	CCSGG	3 cut(s)	278, 1033, 1034
AsuHPI	GGTGA	5 cut(s)	994, 1134, 1209, 1687, 2093
AsuII	TTCGAA	1 cut(s)	1299
AvaI	CYCGRG	1 cut(s)	1032
AvaII	GGWCC	3 cut(s)	1316, 1438, 1610
AvrII	CCTAGG	1 cut(s)	1735
AxyI	CCTNAGG	1 cut(s)	1320
BaeGI	GKGCMC	2 cut(s)	1180, 1767
BaeI	ACNNNNGTAYC	2 cut(s)	1317, 1350
BalI	TGGCCA	2 cut(s)	1025, 1469
BanII	GRGCYC	1 cut(s)	1260
BarI	GAAGNNNNNNTAC	2 cut(s)	2622, 2654
BbsI	GAAGAC	1 cut(s)	1287
Bbv12I	GWGCWC	4 cut(s)	1180, 1260, 1767, 2056
BccI	CCATC	9 cut(s)	492, 643, 847, 1077, 1234, 1495, 2055, 2325, 2467
BcgI	CGANNNNNNTGC	2 cut(s)	2606, 2640
BciVI	GTATCC	1 cut(s)	1318
BclI	TGATCA	1 cut(s)	1372
BcnI	CCSGG	3 cut(s)	278, 1033, 1034
BcoDI	GTCTC	2 cut(s)	81, 2614
BcuI	ACTAGT	1 cut(s)	770
BfaI	CTAG	8 cut(s)	771, 1008, 1119, 1251, 1649, 1736, 1850, 2109
BfmI	CTRYAG	5 cut(s)	1095, 1421, 1599, 1914, 2602
BfuI	GTATCC	1 cut(s)	1318
BlnI	CCTAGG	1 cut(s)	1735
BmcAI	AGTACT	3 cut(s)	961, 2380, 2577
Bme18I	GGWCC	3 cut(s)	1316, 1438, 1610
BmeT110I	CYCGRG	1 cut(s)	1032
BmgT120I	GGNCC	4 cut(s)	1316, 1438, 1610, 1879
BmiI	GGNNCC	4 cut(s)	293, 1611, 1983, 2457
BmsI	GCATC	4 cut(s)	219, 1195, 1658, 2325
BpiI	GAAGAC	1 cut(s)	1287
BpmI	CTGGAG	3 cut(s)	696, 1956, 2553
Bpu14I	TTCGAA	1 cut(s)	1299
BpuEI	CTTGAG	2 cut(s)	1424, 2284
BpuMI	CCSGG	3 cut(s)	278, 1033, 1034
BsaAI	YACGTR	1 cut(s)	1364
BsaJI	CCNNGG	9 cut(s)	654, 713, 1032, 1171, 1451, 1735, 1875, 1902, 2215
BsaWI	WCCGGW	3 cut(s)	2235, 2248, 2405
BsaXI	ACNNNNNCTCC	2 cut(s)	732, 762
Bsc4I	CCNNNNNNNGG	6 cut(s)	1032, 1039, 1232, 1452, 2015, 2016
Bse118I	RCCGGY	1 cut(s)	2405
Bse1I	ACTGG	7 cut(s)	90, 669, 682, 788, 1026, 1576, 1684
Bse21I	CCTNAGG	1 cut(s)	1320
Bse3DI	GCAATG	2 cut(s)	1074, 2692
BseAI	TCCGGA	1 cut(s)	2248
BseDI	CCNNGG	9 cut(s)	654, 713, 1032, 1171, 1451, 1735, 1875, 1902, 2215
BseGI	GGATG	7 cut(s)	503, 1167, 1186, 1260, 1673, 2008, 2340
BseLI	CCNNNNNNNGG	6 cut(s)	1032, 1039, 1232, 1452, 2015, 2016
BseMI	GCAATG	2 cut(s)	1074, 2692
BseMII	CTCAG	7 cut(s)	247, 417, 858, 1311, 1550, 2051, 2367
BseNI	ACTGG	7 cut(s)	90, 669, 682, 788, 1026, 1576, 1684
BseRI	GAGGAG	3 cut(s)	753, 1259, 1953
BseSI	GKGCMC	2 cut(s)	1180, 1767
BsgI	GTGCAG	3 cut(s)	51, 149, 1831
BshFI	GGCC	8 cut(s)	40, 1025, 1469, 1495, 1881, 2163, 2214, 2680
BshTI	ACCGGT	1 cut(s)	2405
BsiHKAI	GWGCWC	4 cut(s)	1180, 1260, 1767, 2056
BsiHKCI	CYCGRG	1 cut(s)	1032
BsiSI	CCGG	5 cut(s)	278, 1033, 2236, 2249, 2406
BslFI	GGGAC	3 cut(s)	147, 636, 2213
BslI	CCNNNNNNNGG	6 cut(s)	1032, 1039, 1232, 1452, 2015, 2016
BsmAI	GTCTC	2 cut(s)	81, 2614
BsmFI	GGGAC	3 cut(s)	147, 636, 2213
BsmI	GAATGC	3 cut(s)	339, 552, 1196
BsnI	GGCC	8 cut(s)	40, 1025, 1469, 1495, 1881, 2163, 2214, 2680
BsoBI	CYCGRG	1 cut(s)	1032
Bsp119I	TTCGAA	1 cut(s)	1299
Bsp1286I	GDGCHC	4 cut(s)	1180, 1260, 1767, 2056
Bsp13I	TCCGGA	1 cut(s)	2248
Bsp1407I	TGTACA	1 cut(s)	377
Bsp143I	GATC	7 cut(s)	102, 794, 1372, 2137, 2180, 2220, 2238
BspACI	CCGC	4 cut(s)	1040, 1748, 1823, 2692
BspANI	GGCC	8 cut(s)	40, 1025, 1469, 1495, 1881, 2163, 2214, 2680
BspCNI	CTCAG	7 cut(s)	246, 418, 859, 1312, 1551, 2050, 2366
BspEI	TCCGGA	1 cut(s)	2248
BspHI	TCATGA	1 cut(s)	1369
BspLI	GGNNCC	4 cut(s)	293, 1611, 1983, 2457
BspMAI	CTGCAG	3 cut(s)	1425, 1603, 2606
BspPI	GGATC	4 cut(s)	802, 2188, 2228, 2246
BspT104I	TTCGAA	1 cut(s)	1299
BsrDI	GCAATG	2 cut(s)	1074, 2692
BsrFI	RCCGGY	1 cut(s)	2405
BsrGI	TGTACA	1 cut(s)	377
BsrI	ACTGG	7 cut(s)	90, 669, 682, 788, 1026, 1576, 1684
BssAI	RCCGGY	1 cut(s)	2405
BssECI	CCNNGG	9 cut(s)	654, 713, 1032, 1171, 1451, 1735, 1875, 1902, 2215
BssMI	GATC	7 cut(s)	102, 794, 1372, 2137, 2180, 2220, 2238
BssNAI	GTATAC	1 cut(s)	931
BssT1I	CCWWGG	4 cut(s)	1735, 1875, 1902, 2215
Bst1107I	GTATAC	1 cut(s)	931
Bst6I	CTCTTC	3 cut(s)	969, 1779, 2038
BstAPI	GCANNNNNTGC	2 cut(s)	1052, 1202
BstAUI	TGTACA	1 cut(s)	377
BstBAI	YACGTR	1 cut(s)	1364
BstBI	TTCGAA	1 cut(s)	1299
BstC8I	GCNNGC	3 cut(s)	578, 1131, 2212
BstF5I	GGATG	7 cut(s)	503, 1167, 1186, 1260, 1673, 2008, 2340
BstHHI	GCGC	2 cut(s)	434, 1543
BstKTI	GATC	7 cut(s)	105, 797, 1375, 2140, 2183, 2223, 2241
BstMAI	GTCTC	2 cut(s)	81, 2614
BstMBI	GATC	7 cut(s)	102, 794, 1372, 2137, 2180, 2220, 2238
BstMWI	GCNNNNNNNGC	6 cut(s)	95, 1052, 1100, 1202, 1658, 2390
BstNSI	RCATGY	1 cut(s)	530
BstSFI	CTRYAG	5 cut(s)	1095, 1421, 1599, 1914, 2602
BstSLI	GKGCMC	2 cut(s)	1180, 1767
BstV2I	GAAGAC	1 cut(s)	1287
BstXI	CCANNNNNNTGG	1 cut(s)	734
BstZ17I	GTATAC	1 cut(s)	931
Bsu36I	CCTNAGG	1 cut(s)	1320
BsuI	GTATCC	1 cut(s)	1318
BsuRI	GGCC	8 cut(s)	40, 1025, 1469, 1495, 1881, 2163, 2214, 2680
BtsCI	GGATG	7 cut(s)	503, 1167, 1186, 1260, 1673, 2008, 2340
BtsI	GCAGTG	2 cut(s)	517, 2652
BtsIMutI	CAGTG	9 cut(s)	47, 517, 662, 1019, 1275, 1785, 1807, 2032, 2652
Cac8I	GCNNGC	3 cut(s)	578, 1131, 2212
CaiI	CAGNNNCTG	3 cut(s)	264, 1103, 1622
CciI	TCATGA	1 cut(s)	1369
CfoI	GCGC	2 cut(s)	434, 1543
Cfr10I	RCCGGY	1 cut(s)	2405
Cfr13I	GGNCC	4 cut(s)	1316, 1438, 1610, 1879
Cfr9I	CCCGGG	1 cut(s)	1032
CseI	GACGC	1 cut(s)	1109
CspAI	ACCGGT	1 cut(s)	2405
CviAII	CATG	9 cut(s)	336, 474, 527, 622, 894, 1370, 1606, 2092, 2177
DpnI	GATC	7 cut(s)	104, 796, 1374, 2139, 2182, 2222, 2240
DpnII	GATC	7 cut(s)	102, 794, 1372, 2137, 2180, 2220, 2238
DraI	TTTAAA	1 cut(s)	1516
DraIII	CACNNNGTG	1 cut(s)	127
EaeI	YGGCCR	2 cut(s)	1023, 1467
Eam1104I	CTCTTC	3 cut(s)	969, 1779, 2038
EarI	CTCTTC	3 cut(s)	969, 1779, 2038
Ecl136II	GAGCTC	1 cut(s)	1258
Eco130I	CCWWGG	4 cut(s)	1735, 1875, 1902, 2215
Eco147I	AGGCCT	5 cut(s)	40, 1495, 2163, 2214, 2680
Eco24I	GRGCYC	1 cut(s)	1260
Eco47I	GGWCC	3 cut(s)	1316, 1438, 1610
Eco53kI	GAGCTC	1 cut(s)	1258
Eco57I	CTGAAG	3 cut(s)	1299, 1868, 2564
Eco81I	CCTNAGG	1 cut(s)	1320
Eco88I	CYCGRG	1 cut(s)	1032
EcoICRI	GAGCTC	1 cut(s)	1258
EcoO109I	RGGNCCY	1 cut(s)	1438
EcoRI	GAATTC	1 cut(s)	1844
EcoT14I	CCWWGG	4 cut(s)	1735, 1875, 1902, 2215
EcoT22I	ATGCAT	2 cut(s)	341, 2119
EcoT38I	GRGCYC	1 cut(s)	1260
ErhI	CCWWGG	4 cut(s)	1735, 1875, 1902, 2215
FaeI	CATG	9 cut(s)	339, 477, 530, 625, 897, 1373, 1609, 2095, 2180
FalI	AAGNNNNNCTT	2 cut(s)	2148, 2180
FaqI	GGGAC	3 cut(s)	147, 636, 2213
FatI	CATG	9 cut(s)	335, 473, 526, 621, 893, 1369, 1605, 2091, 2176
FauI	CCCGC	1 cut(s)	2685
FbaI	TGATCA	1 cut(s)	1372
FblI	GTMKAC	2 cut(s)	930, 2476
FokI	GGATG	7 cut(s)	510, 1154, 1173, 1247, 1680, 2015, 2347
FriOI	GRGCYC	1 cut(s)	1260
FspBI	CTAG	8 cut(s)	771, 1008, 1119, 1251, 1649, 1736, 1850, 2109
GlaI	GCGC	2 cut(s)	433, 1542
GsuI	CTGGAG	3 cut(s)	696, 1956, 2553
HaeIII	GGCC	8 cut(s)	40, 1025, 1469, 1495, 1881, 2163, 2214, 2680
HapII	CCGG	5 cut(s)	278, 1033, 2236, 2249, 2406
HgaI	GACGC	1 cut(s)	1109
HhaI	GCGC	2 cut(s)	434, 1543
Hin1II	CATG	9 cut(s)	339, 477, 530, 625, 897, 1373, 1609, 2095, 2180
Hin6I	GCGC	2 cut(s)	432, 1541
HinP1I	GCGC	2 cut(s)	432, 1541
HincII	GTYRAC	1 cut(s)	532
HindII	GTYRAC	1 cut(s)	532
HinfI	GANTC	8 cut(s)	316, 520, 1247, 1709, 1731, 1871, 2516, 2607
HpaII	CCGG	5 cut(s)	278, 1033, 2236, 2249, 2406
HphI	GGTGA	5 cut(s)	994, 1134, 1209, 1687, 2093
Hpy188I	TCNGA	9 cut(s)	427, 547, 868, 1158, 1377, 1482, 1500, 1887, 2658
Hpy99I	CGWCG	1 cut(s)	316
HpyAV	CCTTC	6 cut(s)	545, 1295, 1408, 1892, 1995, 2069
HpyCH4IV	ACGT	3 cut(s)	747, 1363, 1951
HpyF10VI	GCNNNNNNNGC	6 cut(s)	95, 1052, 1100, 1202, 1658, 2390
HpySE526I	ACGT	3 cut(s)	747, 1363, 1951
Hsp92II	CATG	9 cut(s)	339, 477, 530, 625, 897, 1373, 1609, 2095, 2180
HspAI	GCGC	2 cut(s)	432, 1541
Kpn2I	TCCGGA	1 cut(s)	2248
Ksp22I	TGATCA	1 cut(s)	1372
Kzo9I	GATC	7 cut(s)	102, 794, 1372, 2137, 2180, 2220, 2238
LmnI	GCTCC	1 cut(s)	740
LweI	GCATC	4 cut(s)	219, 1195, 1658, 2325
MaeI	CTAG	8 cut(s)	771, 1008, 1119, 1251, 1649, 1736, 1850, 2109
MaeII	ACGT	3 cut(s)	747, 1363, 1951
MaeIII	GTNAC	7 cut(s)	17, 587, 1071, 1567, 1675, 1852, 2281
MalI	GATC	7 cut(s)	104, 796, 1374, 2139, 2182, 2222, 2240
MboI	GATC	7 cut(s)	102, 794, 1372, 2137, 2180, 2220, 2238
MboII	GAAGA	7 cut(s)	170, 589, 956, 1292, 1796, 2025, 2210
MfeI	CAATTG	3 cut(s)	1329, 1662, 2418
MhlI	GDGCHC	4 cut(s)	1180, 1260, 1767, 2056
MlsI	TGGCCA	2 cut(s)	1025, 1469
MluNI	TGGCCA	2 cut(s)	1025, 1469
MlyI	GAGTC	3 cut(s)	1256, 1880, 2616
MmeI	TCCRAC	3 cut(s)	772, 830, 1888
Mox20I	TGGCCA	2 cut(s)	1025, 1469
Mph1103I	ATGCAT	2 cut(s)	341, 2119
MroI	TCCGGA	1 cut(s)	2248
MscI	TGGCCA	2 cut(s)	1025, 1469
MseI	TTAA	7 cut(s)	270, 303, 329, 816, 1358, 1461, 1515
MslI	CAYNNNNRTG	5 cut(s)	732, 1191, 1265, 2059, 2090
Msp20I	TGGCCA	2 cut(s)	1025, 1469
MspA1I	CMGCKG	1 cut(s)	1823
MspI	CCGG	5 cut(s)	278, 1033, 2236, 2249, 2406
MunI	CAATTG	3 cut(s)	1329, 1662, 2418
Mva1269I	GAATGC	3 cut(s)	339, 552, 1196
MwoI	GCNNNNNNNGC	6 cut(s)	95, 1052, 1100, 1202, 1658, 2390
NciI	CCSGG	3 cut(s)	278, 1033, 1034
NdeII	GATC	7 cut(s)	102, 794, 1372, 2137, 2180, 2220, 2238
NlaIII	CATG	9 cut(s)	339, 477, 530, 625, 897, 1373, 1609, 2095, 2180
NlaIV	GGNNCC	4 cut(s)	293, 1611, 1983, 2457
NmuCI	GTSAC	5 cut(s)	17, 587, 1071, 1675, 1852
NsiI	ATGCAT	2 cut(s)	341, 2119
NspI	RCATGY	1 cut(s)	530
NspV	TTCGAA	1 cut(s)	1299
PagI	TCATGA	1 cut(s)	1369
PceI	AGGCCT	5 cut(s)	40, 1495, 2163, 2214, 2680
PcsI	WCGNNNNNNNCGW	1 cut(s)	2632
PctI	GAATGC	3 cut(s)	339, 552, 1196
PfeI	GAWTC	5 cut(s)	316, 520, 1709, 1731, 2516
PfoI	TCCNGGA	1 cut(s)	2569
PinAI	ACCGGT	1 cut(s)	2405
PleI	GAGTC	3 cut(s)	1255, 1879, 2615
PpsI	GAGTC	3 cut(s)	1255, 1879, 2615
Ppu21I	YACGTR	1 cut(s)	1364
PpuMI	RGGWCCY	1 cut(s)	1438
PsiI	TTATAA	1 cut(s)	1694
Psp124BI	GAGCTC	1 cut(s)	1260
Psp5II	RGGWCCY	1 cut(s)	1438
PspN4I	GGNNCC	4 cut(s)	293, 1611, 1983, 2457
PspPI	GGNCC	4 cut(s)	1316, 1438, 1610, 1879
PspPPI	RGGWCCY	1 cut(s)	1438
PstI	CTGCAG	3 cut(s)	1425, 1603, 2606
PstNI	CAGNNNCTG	3 cut(s)	264, 1103, 1622
RseI	CAYNNNNRTG	5 cut(s)	732, 1191, 1265, 2059, 2090
SacI	GAGCTC	1 cut(s)	1260
SaqAI	TTAA	7 cut(s)	270, 303, 329, 816, 1358, 1461, 1515
Sau3AI	GATC	7 cut(s)	102, 794, 1372, 2137, 2180, 2220, 2238
Sau96I	GGNCC	4 cut(s)	1316, 1438, 1610, 1879
ScaI	AGTACT	3 cut(s)	961, 2380, 2577
SchI	GAGTC	3 cut(s)	1256, 1880, 2616
SduI	GDGCHC	4 cut(s)	1180, 1260, 1767, 2056
SfaNI	GCATC	4 cut(s)	219, 1195, 1658, 2325
SfcI	CTRYAG	5 cut(s)	1095, 1421, 1599, 1914, 2602
SfuI	TTCGAA	1 cut(s)	1299
SinI	GGWCC	3 cut(s)	1316, 1438, 1610
SmaI	CCCGGG	1 cut(s)	1034
SmiMI	CAYNNNNRTG	5 cut(s)	732, 1191, 1265, 2059, 2090
SmlI	CTYRAG	2 cut(s)	1403, 2299
SmoI	CTYRAG	2 cut(s)	1403, 2299
SpeI	ACTAGT	1 cut(s)	770
SseBI	AGGCCT	5 cut(s)	40, 1495, 2163, 2214, 2680
SsiI	CCGC	4 cut(s)	1040, 1748, 1823, 2692
SspI	AATATT	2 cut(s)	1477, 2434
SspMI	CTAG	8 cut(s)	771, 1008, 1119, 1251, 1649, 1736, 1850, 2109
SstI	GAGCTC	1 cut(s)	1260
StuI	AGGCCT	5 cut(s)	40, 1495, 2163, 2214, 2680
StyI	CCWWGG	4 cut(s)	1735, 1875, 1902, 2215
TaiI	ACGT	3 cut(s)	750, 1366, 1954
TaqI	TCGA	5 cut(s)	314, 1299, 1869, 2626, 2635
TatI	WGTACW	4 cut(s)	377, 959, 2378, 2575
TauI	GCSGC	2 cut(s)	1043, 1750
TfiI	GAWTC	5 cut(s)	316, 520, 1709, 1731, 2516
Tru1I	TTAA	7 cut(s)	270, 303, 329, 816, 1358, 1461, 1515
Tru9I	TTAA	7 cut(s)	270, 303, 329, 816, 1358, 1461, 1515
TscAI	CASTG	9 cut(s)	54, 517, 669, 1026, 1282, 1785, 1807, 2032, 2652
TseFI	GTSAC	5 cut(s)	17, 587, 1071, 1675, 1852
Tsp45I	GTSAC	5 cut(s)	17, 587, 1071, 1675, 1852
TspDTI	ATGAA	9 cut(s)	324, 407, 882, 1722, 1857, 2019, 2165, 2330, 2439
TspGWI	ACGGA	4 cut(s)	948, 1602, 1782, 2494
TspMI	CCCGGG	1 cut(s)	1032
TspRI	CASTG	9 cut(s)	54, 517, 669, 1026, 1282, 1785, 1807, 2032, 2652
VneI	GTGCAC	2 cut(s)	1176, 1763
VpaK11BI	GGWCC	3 cut(s)	1316, 1438, 1610
XapI	RAATTY	8 cut(s)	395, 541, 822, 1111, 1789, 1844, 1929, 2413
XceI	RCATGY	1 cut(s)	530
XmaI	CCCGGG	1 cut(s)	1032
XmaJI	CCTAGG	1 cut(s)	1735
XmiI	GTMKAC	2 cut(s)	930, 2476
XspI	CTAG	8 cut(s)	771, 1008, 1119, 1251, 1649, 1736, 1850, 2109
ZrmI	AGTACT	3 cut(s)	961, 2380, 2577
Zsp2I	ATGCAT	2 cut(s)	341, 2119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.