Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0004624

Physical Location & Seq

Genomic Coordinates Reverse (-)

71346543 .. 71349979

Gene Structure 3437 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG492900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGCAGCATACAAATCATTCTTTGCTAACTATCATTTATATTGCACATCAGCATGGTAGATTTTTACTTTTCCACGTATTTTATTTTGCTAAGATTTATGTCAAATTTCTCAGGAGATTTGCTGCTTTATATGTTAGTGAGCACATCTTTGCTCTAGATGGTGAGATTGATGAGATAGTGGGGCATACTTATTTGTTTCTAAAAGAGCAGCTTGAGCTTTCATCTATGCCTCCACCATCTGGTATTTTGCACGGTACCATAATAGATCAGTTTATTGCTTGTGGTAAATCAAGAGACATGGCTCACGAGCTTGCTTCCCAGATATGGTTGGCTGTTCTTGACAATTTAGAGGAAACCGAACACACTTTTCAAATACTTAAACGTCTCGCACAAGAGGGGGATGTTTTTCTTCCATACCCGTACTCAAGATCAATCAAAGTCCAATGGAAGGTGTTTGAAAAGCTTTTCACTGATTTTCGTGACTGCCTCAACCATGTGGATTACTATGATGTCTTGGCTAGTGCAAAGAACAAGTTTCAGCCAATACCATCTACTTGGTTAGGTCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

189

Amino Acids

22.1

Weight (kDa)

6.29

Isoelectric Point (pI)

40.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004624)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20270 AT3G20270 AT3G20270 AT3G20270 AT3G20270 AT3G20270
fragaria_vesca	FvH4_6g36931 FvH4_6g36931 FvH4_6g36931
malus_domestica	MD09G1165400.v1.1 MD17G1162300.v1.1
prunus_persica	Prupe.3G023100_v2.0.a1
pyrus_communis	pycom09g08280
rosa_chinensis	RchiOBHm_Chr2g0149371 RchiOBHm_Chr2g0149381
rosa_laevigata	RLG00000020396 RLG00000020402
rosa_multiflora	Rmu_co8329327.1_g000001 Rmu_sc0000873.1_g000018 Rmu_sc0006867.1_g000001
rosa_roxburghii	Rroxscaffold_2G00098150 Rroxscaffold_2G00098160
rosa_rugosa	Rorug02G0411900
rosa_samantha	Rh2AG471600 Rh2AG471700 Rh2BG483900 Rh2CG457600 Rh2CG457700 Rh2DG492900 Rh2DG493000
rosa_wichuraiana	Rw2G038380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	254
AccB1I	GGYRCC	1 cut(s)	254
AccB7I	CCANNNNNTGG	1 cut(s)	239
AcsI	RAATTY	1 cut(s)	104
AfaI	GTAC	2 cut(s)	256, 422
AfiI	CCNNNNNNNGG	3 cut(s)	239, 324, 448
AgsI	TTSAA	2 cut(s)	371, 458
AluBI	AGCT	4 cut(s)	211, 217, 310, 463
AluI	AGCT	4 cut(s)	211, 217, 310, 463
Alw21I	GWGCWC	1 cut(s)	144
Alw26I	GTCTC	2 cut(s)	288, 389
ApeKI	GCWGC	3 cut(s)	4, 122, 208
ApoI	RAATTY	1 cut(s)	104
Asp718I	GGTACC	1 cut(s)	254
AsuHPI	GGTGA	1 cut(s)	173
BanI	GGYRCC	1 cut(s)	254
BauI	CACGAG	1 cut(s)	305
Bbv12I	GWGCWC	1 cut(s)	144
BbvI	GCAGC	3 cut(s)	16, 109, 220
BccI	CCATC	3 cut(s)	152, 244, 556
BcoDI	GTCTC	2 cut(s)	288, 389
BfaI	CTAG	2 cut(s)	155, 519
BisI	GCNGC	3 cut(s)	5, 123, 209
BlsI	GCNGC	3 cut(s)	6, 124, 210
BmiI	GGNNCC	1 cut(s)	256
BpuEI	CTTGAG	2 cut(s)	233, 409
BsaAI	YACGTR	1 cut(s)	76
Bsc4I	CCNNNNNNNGG	3 cut(s)	239, 324, 448
BseGI	GGATG	1 cut(s)	406
BseLI	CCNNNNNNNGG	3 cut(s)	239, 324, 448
BseMII	CTCAG	1 cut(s)	124
BseXI	GCAGC	3 cut(s)	16, 109, 220
BshNI	GGYRCC	1 cut(s)	254
BsiHKAI	GWGCWC	1 cut(s)	144
BslI	CCNNNNNNNGG	3 cut(s)	239, 324, 448
BsmAI	GTCTC	2 cut(s)	288, 389
BsmBI	CGTCTC	1 cut(s)	389
Bsp1286I	GDGCHC	1 cut(s)	144
Bsp143I	GATC	2 cut(s)	265, 428
BspCNI	CTCAG	1 cut(s)	123
BspLI	GGNNCC	1 cut(s)	256
BspT107I	GGYRCC	1 cut(s)	254
BssMI	GATC	2 cut(s)	265, 428
BssSI	CACGAG	1 cut(s)	305
Bst2BI	CACGAG	1 cut(s)	305
Bst4CI	ACNGT	1 cut(s)	254
BstBAI	YACGTR	1 cut(s)	76
BstC8I	GCNNGC	1 cut(s)	312
BstDEI	CTNAG	2 cut(s)	90, 110
BstF5I	GGATG	1 cut(s)	406
BstKTI	GATC	2 cut(s)	268, 431
BstMAI	GTCTC	2 cut(s)	288, 389
BstMBI	GATC	2 cut(s)	265, 428
BstMWI	GCNNNNNNNGC	1 cut(s)	214
BstV1I	GCAGC	3 cut(s)	16, 109, 220
BstXI	CCANNNNNNTGG	1 cut(s)	555
BtsCI	GGATG	1 cut(s)	406
BtsIMutI	CAGTG	1 cut(s)	468
Cac8I	GCNNGC	1 cut(s)	312
Csp6I	GTAC	2 cut(s)	255, 421
CviAII	CATG	3 cut(s)	53, 298, 494
CviJI	RGCY	8 cut(s)	211, 217, 302, 310, 332, 463, 518, 541
CviKI_1	RGCY	8 cut(s)	211, 217, 302, 310, 332, 463, 518, 541
CviQI	GTAC	2 cut(s)	255, 421
DdeI	CTNAG	2 cut(s)	90, 110
DpnI	GATC	2 cut(s)	267, 430
DpnII	GATC	2 cut(s)	265, 428
Esp3I	CGTCTC	1 cut(s)	389
FaeI	CATG	3 cut(s)	56, 301, 497
FalI	AAGNNNNNCTT	2 cut(s)	195, 227
FatI	CATG	3 cut(s)	52, 297, 493
Fnu4HI	GCNGC	3 cut(s)	5, 123, 209
FokI	GGATG	1 cut(s)	413
Fsp4HI	GCNGC	3 cut(s)	5, 123, 209
FspBI	CTAG	2 cut(s)	155, 519
GluI	GCNGC	3 cut(s)	5, 123, 209
Hin1II	CATG	3 cut(s)	56, 301, 497
HindIII	AAGCTT	1 cut(s)	461
HphI	GGTGA	1 cut(s)	173
Hpy188III	TCNNGA	7 cut(s)	112, 155, 291, 305, 338, 426, 479
HpyAV	CCTTC	1 cut(s)	442
HpyCH4III	ACNGT	1 cut(s)	254
HpyCH4IV	ACGT	2 cut(s)	75, 382
HpyCH4V	TGCA	4 cut(s)	4, 44, 250, 524
HpyF10VI	GCNNNNNNNGC	1 cut(s)	214
HpyF3I	CTNAG	2 cut(s)	90, 110
HpySE526I	ACGT	2 cut(s)	75, 382
Hsp92II	CATG	3 cut(s)	56, 301, 497
KpnI	GGTACC	1 cut(s)	258
Kzo9I	GATC	2 cut(s)	265, 428
LpnPI	CCDG	3 cut(s)	97, 225, 332
Lsp1109I	GCAGC	3 cut(s)	16, 109, 220
MaeI	CTAG	2 cut(s)	155, 519
MaeII	ACGT	2 cut(s)	75, 382
MaeIII	GTNAC	2 cut(s)	479, 563
MalI	GATC	2 cut(s)	267, 430
MboI	GATC	2 cut(s)	265, 428
MboII	GAAGA	1 cut(s)	401
MhlI	GDGCHC	1 cut(s)	144
MluCI	AATT	2 cut(s)	104, 343
MnlI	CCTC	4 cut(s)	240, 343, 388, 497
MseI	TTAA	1 cut(s)	378
MslI	CAYNNNNRTG	1 cut(s)	51
MwoI	GCNNNNNNNGC	1 cut(s)	214
NdeII	GATC	2 cut(s)	265, 428
NlaIII	CATG	3 cut(s)	56, 301, 497
NlaIV	GGNNCC	1 cut(s)	256
NmuCI	GTSAC	2 cut(s)	479, 563
PflMI	CCANNNNNTGG	1 cut(s)	239
PkrI	GCNGC	3 cut(s)	6, 124, 210
Ppu21I	YACGTR	1 cut(s)	76
PspN4I	GGNNCC	1 cut(s)	256
RsaI	GTAC	2 cut(s)	256, 422
RsaNI	GTAC	2 cut(s)	255, 421
RseI	CAYNNNNRTG	1 cut(s)	51
SaqAI	TTAA	1 cut(s)	378
SatI	GCNGC	3 cut(s)	5, 123, 209
Sau3AI	GATC	2 cut(s)	265, 428
SduI	GDGCHC	1 cut(s)	144
SetI	ASST	8 cut(s)	78, 213, 219, 312, 385, 453, 465, 565
SmiMI	CAYNNNNRTG	1 cut(s)	51
SmlI	CTYRAG	2 cut(s)	212, 424
SmoI	CTYRAG	2 cut(s)	212, 424
Sse9I	AATT	2 cut(s)	104, 343
SspMI	CTAG	2 cut(s)	155, 519
TaaI	ACNGT	1 cut(s)	254
TaiI	ACGT	2 cut(s)	78, 385
TasI	AATT	2 cut(s)	104, 343
Tru1I	TTAA	1 cut(s)	378
Tru9I	TTAA	1 cut(s)	378
TscAI	CASTG	1 cut(s)	475
TseFI	GTSAC	2 cut(s)	479, 563
TseI	GCWGC	3 cut(s)	4, 122, 208
Tsp45I	GTSAC	2 cut(s)	479, 563
TspDTI	ATGAA	1 cut(s)	210
TspRI	CASTG	1 cut(s)	475
Van91I	CCANNNNNTGG	1 cut(s)	239
XapI	RAATTY	1 cut(s)	104
XbaI	TCTAGA	1 cut(s)	154
XspI	CTAG	2 cut(s)	155, 519

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.