Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0004624

Physical Location & Seq

Genomic Coordinates Forward (+)

19338862 .. 19339470

Gene Structure 609 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00098150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGCTCGGCACACTCCCCTCCACCTACCTCAAATGGGTCTCCACCAACCTCCGCGCCCGCGACTTCGAGCACTGGGCCAAGCTCGCCGACCAGGTCCTAAGCGACGCCGTCTACCGCGACCGCATCGAGTGGGAGTCCGCCGAGAACACGCTCAGCGGTAACAGAAGCAACGCCGGCGGAGTTTCGGAGCTTCTGGGGATCAGCGACAGGTTCGGGTGGGACAACGATGACAAAGTTGGCTGGAGTAAAGTGAACTTCGAGCTTTTGGGTACTTCGAAAGGTGGGAGAATTCCGAGGAGGAAGAGTGGGACTGAAGTTGCAGAACAGAGTGGTTTGGAGGAGAGAGAGAAGAAGGGTGAGGGTTTAGGGGAGAAGAGGAGGGAAAGGAGGGAGAGGAGGATGAGGATGCAGAGAGAGGAAGGTGGGGTTGGGAAGGAGGAGAAGTTGGGGATTGTGGAGAAGGTTGGGGGTAGTTTAGGGAATGGAGTTGGATTAGGGAGGATTAGCAAGGAGAATGGTGATGAAGATAACTGGATGGTGGATAATTCGAAAAAGTTTCCTGGACGCGAGTCTCTGTTGAGGAAAGCTTATAGCAGAAGGTTTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

QSregVF_b

Protein Analysis

202

Amino Acids

22.82

Weight (kDa)

9.42

Isoelectric Point (pI)

31.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004624)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20270 AT3G20270 AT3G20270 AT3G20270 AT3G20270 AT3G20270
fragaria_vesca	FvH4_6g36931 FvH4_6g36931 FvH4_6g36931
malus_domestica	MD09G1165400.v1.1 MD17G1162300.v1.1
prunus_persica	Prupe.3G023100_v2.0.a1
pyrus_communis	pycom09g08280
rosa_chinensis	RchiOBHm_Chr2g0149371 RchiOBHm_Chr2g0149381
rosa_laevigata	RLG00000020396 RLG00000020402
rosa_multiflora	Rmu_co8329327.1_g000001 Rmu_sc0000873.1_g000018 Rmu_sc0006867.1_g000001
rosa_roxburghii	Rroxscaffold_2G00098150 Rroxscaffold_2G00098160
rosa_rugosa	Rorug02G0411900
rosa_samantha	Rh2AG471600 Rh2AG471700 Rh2BG483900 Rh2CG457600 Rh2CG457700 Rh2DG492900 Rh2DG493000
rosa_wichuraiana	Rw2G038380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	111
AccII	CGCG	4 cut(s)	54, 60, 117, 567
AciI	CCGC	7 cut(s)	52, 58, 115, 121, 138, 156, 177
AclWI	GGATC	1 cut(s)	206
AcsI	RAATTY	1 cut(s)	288
AcuI	CTGAAG	1 cut(s)	333
AcyI	GRCGYC	1 cut(s)	105
AfaI	GTAC	1 cut(s)	271
AfiI	CCNNNNNNNGG	1 cut(s)	34
AjnI	CCWGG	2 cut(s)	90, 559
AjuI	GAANNNNNNNTTGG	2 cut(s)	411, 443
AluBI	AGCT	4 cut(s)	82, 190, 262, 587
AluI	AGCT	4 cut(s)	82, 190, 262, 587
Alw21I	GWGCWC	1 cut(s)	72
Alw26I	GTCTC	2 cut(s)	43, 576
AlwI	GGATC	1 cut(s)	206
AoxI	GGCC	1 cut(s)	75
ApoI	RAATTY	1 cut(s)	288
AspLEI	GCGC	1 cut(s)	56
AspS9I	GGNCC	2 cut(s)	75, 94
AsuHPI	GGTGA	2 cut(s)	368, 530
AsuII	TTCGAA	2 cut(s)	275, 548
AvaII	GGWCC	1 cut(s)	94
Bbv12I	GWGCWC	1 cut(s)	72
BccI	CCATC	1 cut(s)	529
BceAI	ACGGC	1 cut(s)	92
BciT130I	CCWGG	2 cut(s)	92, 561
BcoDI	GTCTC	2 cut(s)	43, 576
BlpI	GCTNAGC	1 cut(s)	152
Bme1390I	CCNGG	2 cut(s)	92, 561
Bme18I	GGWCC	1 cut(s)	94
BmgT120I	GGNCC	2 cut(s)	75, 94
BmrFI	CCNGG	2 cut(s)	92, 561
BmrI	ACTGGG	1 cut(s)	82
BmsI	GCATC	2 cut(s)	132, 396
BmuI	ACTGGG	1 cut(s)	82
BoxI	GACNNNNGTC	1 cut(s)	568
BpmI	CTGGAG	1 cut(s)	262
Bpu10I	CCTNAGC	1 cut(s)	98
Bpu1102I	GCTNAGC	1 cut(s)	152
Bpu14I	TTCGAA	2 cut(s)	275, 548
BsaHI	GRCGYC	1 cut(s)	105
BsaI	GGTCTC	1 cut(s)	43
BsaJI	CCNNGG	1 cut(s)	293
BsaXI	ACNNNNNCTCC	4 cut(s)	289, 319, 428, 458
Bsc4I	CCNNNNNNNGG	1 cut(s)	34
Bse118I	RCCGGY	1 cut(s)	173
Bse1I	ACTGG	2 cut(s)	77, 536
BseBI	CCWGG	2 cut(s)	92, 561
BseDI	CCNNGG	1 cut(s)	293
BseGI	GGATG	3 cut(s)	405, 411, 540
BseLI	CCNNNNNNNGG	1 cut(s)	34
BseMII	CTCAG	1 cut(s)	166
BseNI	ACTGG	2 cut(s)	77, 536
BseRI	GAGGAG	5 cut(s)	310, 353, 391, 409, 452
Bsh1236I	CGCG	4 cut(s)	54, 60, 117, 567
Bsh1285I	CGRYCG	1 cut(s)	121
BshFI	GGCC	1 cut(s)	77
BsiEI	CGRYCG	1 cut(s)	121
BsiHKAI	GWGCWC	1 cut(s)	72
BsiSI	CCGG	1 cut(s)	174
BslFI	GGGAC	2 cut(s)	233, 322
BslI	CCNNNNNNNGG	1 cut(s)	34
BsmAI	GTCTC	2 cut(s)	43, 576
BsmFI	GGGAC	2 cut(s)	233, 322
BsnI	GGCC	1 cut(s)	77
Bso31I	GGTCTC	1 cut(s)	43
Bsp119I	TTCGAA	2 cut(s)	275, 548
Bsp1286I	GDGCHC	1 cut(s)	72
Bsp143I	GATC	1 cut(s)	198
Bsp1720I	GCTNAGC	1 cut(s)	152
BspACI	CCGC	7 cut(s)	52, 58, 115, 121, 138, 156, 177
BspANI	GGCC	1 cut(s)	77
BspCNI	CTCAG	1 cut(s)	165
BspFNI	CGCG	4 cut(s)	54, 60, 117, 567
BspPI	GGATC	1 cut(s)	206
BspT104I	TTCGAA	2 cut(s)	275, 548
BspTNI	GGTCTC	1 cut(s)	43
BsrFI	RCCGGY	1 cut(s)	173
BsrI	ACTGG	2 cut(s)	77, 536
BssAI	RCCGGY	1 cut(s)	173
BssECI	CCNNGG	1 cut(s)	293
BssMI	GATC	1 cut(s)	198
BssNI	GRCGYC	1 cut(s)	105
Bst2UI	CCWGG	2 cut(s)	92, 561
Bst6I	CTCTTC	2 cut(s)	296, 368
BstACI	GRCGYC	1 cut(s)	105
BstBI	TTCGAA	2 cut(s)	275, 548
BstC8I	GCNNGC	3 cut(s)	58, 84, 175
BstDEI	CTNAG	2 cut(s)	98, 152
BstF5I	GGATG	3 cut(s)	405, 411, 540
BstFNI	CGCG	4 cut(s)	54, 60, 117, 567
BstHHI	GCGC	1 cut(s)	56
BstKTI	GATC	1 cut(s)	201
BstMAI	GTCTC	2 cut(s)	43, 576
BstMBI	GATC	1 cut(s)	198
BstMCI	CGRYCG	1 cut(s)	121
BstMWI	GCNNNNNNNGC	2 cut(s)	83, 174
BstNI	CCWGG	2 cut(s)	92, 561
BstPAI	GACNNNNGTC	1 cut(s)	568
BstSCI	CCNGG	2 cut(s)	90, 559
BstUI	CGCG	4 cut(s)	54, 60, 117, 567
BsuRI	GGCC	1 cut(s)	77
BtsCI	GGATG	3 cut(s)	405, 411, 540
BtsIMutI	CAGTG	1 cut(s)	70
Cac8I	GCNNGC	3 cut(s)	58, 84, 175
CfoI	GCGC	1 cut(s)	56
Cfr10I	RCCGGY	1 cut(s)	173
Cfr13I	GGNCC	2 cut(s)	75, 94
CseI	GACGC	2 cut(s)	113, 573
CsiI	ACCWGGT	1 cut(s)	90
Csp6I	GTAC	1 cut(s)	270
CviJI	RGCY	6 cut(s)	77, 82, 190, 240, 262, 587
CviKI_1	RGCY	6 cut(s)	77, 82, 190, 240, 262, 587
CviQI	GTAC	1 cut(s)	270
DdeI	CTNAG	2 cut(s)	98, 152
DpnI	GATC	1 cut(s)	200
DpnII	GATC	1 cut(s)	198
Eam1104I	CTCTTC	2 cut(s)	296, 368
EarI	CTCTTC	2 cut(s)	296, 368
EciI	GGCGGA	2 cut(s)	127, 192
Eco31I	GGTCTC	1 cut(s)	43
Eco47I	GGWCC	1 cut(s)	94
Eco57I	CTGAAG	1 cut(s)	333
EcoO109I	RGGNCCY	1 cut(s)	94
EcoRI	GAATTC	1 cut(s)	288
EcoRII	CCWGG	2 cut(s)	90, 559
FaiI	YATR	1 cut(s)	591
FaqI	GGGAC	2 cut(s)	233, 322
FauI	CCCGC	1 cut(s)	65
FblI	GTMKAC	1 cut(s)	111
FokI	GGATG	3 cut(s)	412, 418, 547
GlaI	GCGC	1 cut(s)	55
GsuI	CTGGAG	1 cut(s)	262
HaeIII	GGCC	1 cut(s)	77
HapII	CCGG	1 cut(s)	174
HgaI	GACGC	2 cut(s)	113, 573
HhaI	GCGC	1 cut(s)	56
Hin1I	GRCGYC	1 cut(s)	105
Hin6I	GCGC	1 cut(s)	54
HinP1I	GCGC	1 cut(s)	54
HindIII	AAGCTT	1 cut(s)	585
HinfI	GANTC	2 cut(s)	134, 569
HpaII	CCGG	1 cut(s)	174
HphI	GGTGA	2 cut(s)	368, 530
Hpy166II	GTNNAC	2 cut(s)	112, 253
Hpy188I	TCNGA	2 cut(s)	187, 294
Hpy8I	GTNNAC	2 cut(s)	112, 253
Hpy99I	CGWCG	1 cut(s)	107
HpyAV	CCTTC	5 cut(s)	346, 413, 427, 454, 591
HpyCH4V	TGCA	2 cut(s)	320, 409
HpyF10VI	GCNNNNNNNGC	2 cut(s)	83, 174
HpyF3I	CTNAG	2 cut(s)	98, 152
Hsp92I	GRCGYC	1 cut(s)	105
HspAI	GCGC	1 cut(s)	54
KroI	GCCGGC	1 cut(s)	173
KroNI	GCCGGC	1 cut(s)	175
Kzo9I	GATC	1 cut(s)	198
LmnI	GCTCC	1 cut(s)	187
LweI	GCATC	2 cut(s)	132, 396
MabI	ACCWGGT	1 cut(s)	90
MaeIII	GTNAC	1 cut(s)	158
MalI	GATC	1 cut(s)	200
MboI	GATC	1 cut(s)	198
MboII	GAAGA	4 cut(s)	313, 361, 385, 536
MhlI	GDGCHC	1 cut(s)	72
MluCI	AATT	2 cut(s)	288, 544
MlyI	GAGTC	2 cut(s)	143, 578
MmeI	TCCRAC	1 cut(s)	469
MreI	CGCCGGCG	1 cut(s)	173
MroNI	GCCGGC	1 cut(s)	173
MspA1I	CMGCKG	1 cut(s)	156
MspI	CCGG	1 cut(s)	174
MspR9I	CCNGG	2 cut(s)	92, 561
MvaI	CCWGG	2 cut(s)	92, 561
MvnI	CGCG	4 cut(s)	54, 60, 117, 567
MwoI	GCNNNNNNNGC	2 cut(s)	83, 174
NaeI	GCCGGC	1 cut(s)	175
NdeII	GATC	1 cut(s)	198
NgoMIV	GCCGGC	1 cut(s)	173
NmeAIII	GCCGAG	1 cut(s)	166
NspV	TTCGAA	2 cut(s)	275, 548
PdiI	GCCGGC	1 cut(s)	175
PflFI	GACNNNGTC	2 cut(s)	92, 107
PfoI	TCCNGGA	1 cut(s)	559
PleI	GAGTC	2 cut(s)	142, 577
PpsI	GAGTC	2 cut(s)	142, 577
PpuMI	RGGWCCY	1 cut(s)	94
PshAI	GACNNNNGTC	1 cut(s)	568
Psp5II	RGGWCCY	1 cut(s)	94
Psp6I	CCWGG	2 cut(s)	90, 559
PspGI	CCWGG	2 cut(s)	90, 559
PspPI	GGNCC	2 cut(s)	75, 94
PspPPI	RGGWCCY	1 cut(s)	94
PsyI	GACNNNGTC	2 cut(s)	92, 107
RsaI	GTAC	1 cut(s)	271
RsaNI	GTAC	1 cut(s)	270
Sau3AI	GATC	1 cut(s)	198
Sau96I	GGNCC	2 cut(s)	75, 94
SchI	GAGTC	2 cut(s)	143, 578
ScrFI	CCNGG	2 cut(s)	92, 561
SduI	GDGCHC	1 cut(s)	72
SexAI	ACCWGGT	1 cut(s)	90
SfaNI	GCATC	2 cut(s)	132, 396
SfuI	TTCGAA	2 cut(s)	275, 548
SgrAI	CRCCGGYG	1 cut(s)	173
SinI	GGWCC	1 cut(s)	94
Sse9I	AATT	2 cut(s)	288, 544
SsiI	CCGC	7 cut(s)	52, 58, 115, 121, 138, 156, 177
StyD4I	CCNGG	2 cut(s)	90, 559
TaqI	TCGA	5 cut(s)	66, 126, 258, 275, 548
TasI	AATT	2 cut(s)	288, 544
TscAI	CASTG	1 cut(s)	77
TspDTI	ATGAA	1 cut(s)	537
TspRI	CASTG	1 cut(s)	77
Tth111I	GACNNNGTC	2 cut(s)	92, 107
VpaK11BI	GGWCC	1 cut(s)	94
XapI	RAATTY	1 cut(s)	288
XmiI	GTMKAC	1 cut(s)	111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.