Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0004624

Physical Location & Seq

Genomic Coordinates Reverse (-)

71350550 .. 71351679

Gene Structure 1130 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG493000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGACTACCCACAGCACTCTCTTCAACTTCCACCACACTGCACCTTCAAACCCACTCTCCTCCTCCACCACCACTCCACACTTCCACCTCTCCTGCTCCTTCAAACCCAAACCCCCCAAACCCTCCTCCTTCTCCTTCGCTCCCACACCAATACCCGCACGAGACAGAGTCATAGACTTCGGCAAACACAAGGGAAAAATGCTTGGCACACTCCCTTCCACCTACCTCAAATGGGTCTCCACCAACCTCCGCGCCCGCGACTTCGAGCACTGGGCCAAGCTCGCCGACCAGGTCCTAAGCGACGCCGTTTACCGCGACCGCATCGAGTGGGAGTCCGCCGAGAACGCGCTCAGCGGTAACAGAAGCAACGCCGGCGGAGTTTCGGAGCTTCTGGGGATCAGCGACAGGTTCGGGTGGGACAACGATGACAAAGTTGGCTGGAGTAAAGTGAACTTCGAGCTTTTGGGTACTTCGAAAGGTGGGAGAATTCCGAGGAGGAAGAGTGAGACTGAAGTTGCAGAACAGAGTGGTTTGGAGGAGAGAGAGAAGAAGCAGGGTGAGGGTTTAGGGGAGAAGAGGAGGGAAAGGAGGGAGAGGAGGATGAGGATGCAGAGAGTGGAAGGTGGGGTTGGGAAGGAGGAGAAGGTTGGGGGTAGTTTAGGGAATGGAGTTGGATTAGGGAGGACTAGCAAGGAGAATGGTAATGAAGATAATTGGATGGTGGATAATTCGAAAAAGTTTCCTGGACGCGAGTCTTTGTTGAGGAAAGCTTATAGCAGAAGGTTTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

QSregVF_b

Protein Analysis

263

Amino Acids

29.58

Weight (kDa)

9.85

Isoelectric Point (pI)

34.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004624)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20270 AT3G20270 AT3G20270 AT3G20270 AT3G20270 AT3G20270
fragaria_vesca	FvH4_6g36931 FvH4_6g36931 FvH4_6g36931
malus_domestica	MD09G1165400.v1.1 MD17G1162300.v1.1
prunus_persica	Prupe.3G023100_v2.0.a1
pyrus_communis	pycom09g08280
rosa_chinensis	RchiOBHm_Chr2g0149371 RchiOBHm_Chr2g0149381
rosa_laevigata	RLG00000020396 RLG00000020402
rosa_multiflora	Rmu_co8329327.1_g000001 Rmu_sc0000873.1_g000018 Rmu_sc0006867.1_g000001
rosa_roxburghii	Rroxscaffold_2G00098150 Rroxscaffold_2G00098160
rosa_rugosa	Rorug02G0411900
rosa_samantha	Rh2AG471600 Rh2AG471700 Rh2BG483900 Rh2CG457600 Rh2CG457700 Rh2DG492900 Rh2DG493000
rosa_wichuraiana	Rw2G038380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	5 cut(s)	252, 258, 315, 347, 750
AciI	CCGC	8 cut(s)	156, 250, 256, 313, 319, 336, 354, 375
AclWI	GGATC	1 cut(s)	404
AcsI	RAATTY	1 cut(s)	486
AcuI	CTGAAG	1 cut(s)	531
AcyI	GRCGYC	1 cut(s)	303
AfaI	GTAC	1 cut(s)	469
AfiI	CCNNNNNNNGG	1 cut(s)	232
AgsI	TTSAA	3 cut(s)	25, 48, 103
AjnI	CCWGG	2 cut(s)	288, 742
AjuI	GAANNNNNNNTTGG	2 cut(s)	612, 644
AluBI	AGCT	4 cut(s)	280, 388, 460, 770
AluI	AGCT	4 cut(s)	280, 388, 460, 770
Alw21I	GWGCWC	1 cut(s)	270
Alw26I	GTCTC	3 cut(s)	156, 241, 500
AlwI	GGATC	1 cut(s)	404
AoxI	GGCC	1 cut(s)	273
ApoI	RAATTY	1 cut(s)	486
AspLEI	GCGC	2 cut(s)	254, 349
AspS9I	GGNCC	2 cut(s)	273, 292
AsuHPI	GGTGA	1 cut(s)	569
AsuII	TTCGAA	2 cut(s)	473, 731
AvaII	GGWCC	1 cut(s)	292
BauI	CACGAG	1 cut(s)	159
Bbv12I	GWGCWC	1 cut(s)	270
BccI	CCATC	1 cut(s)	712
BceAI	ACGGC	1 cut(s)	290
BciT130I	CCWGG	2 cut(s)	290, 744
BcoDI	GTCTC	3 cut(s)	156, 241, 500
BfaI	CTAG	1 cut(s)	687
BlpI	GCTNAGC	1 cut(s)	350
Bme1390I	CCNGG	2 cut(s)	290, 744
Bme18I	GGWCC	1 cut(s)	292
BmgT120I	GGNCC	2 cut(s)	273, 292
BmrFI	CCNGG	2 cut(s)	290, 744
BmrI	ACTGGG	1 cut(s)	280
BmsI	GCATC	2 cut(s)	330, 597
BmuI	ACTGGG	1 cut(s)	280
BoxI	GACNNNNGTC	1 cut(s)	751
BpmI	CTGGAG	1 cut(s)	460
Bpu10I	CCTNAGC	1 cut(s)	296
Bpu1102I	GCTNAGC	1 cut(s)	350
Bpu14I	TTCGAA	2 cut(s)	473, 731
BsaHI	GRCGYC	1 cut(s)	303
BsaI	GGTCTC	1 cut(s)	241
BsaJI	CCNNGG	1 cut(s)	491
BsaXI	ACNNNNNCTCC	6 cut(s)	41, 58, 71, 88, 487, 517
Bsc4I	CCNNNNNNNGG	1 cut(s)	232
Bse118I	RCCGGY	1 cut(s)	371
Bse1I	ACTGG	1 cut(s)	275
BseBI	CCWGG	2 cut(s)	290, 744
BseDI	CCNNGG	1 cut(s)	491
BseGI	GGATG	3 cut(s)	606, 612, 723
BseLI	CCNNNNNNNGG	1 cut(s)	232
BseMII	CTCAG	1 cut(s)	364
BseNI	ACTGG	1 cut(s)	275
BseRI	GAGGAG	8 cut(s)	49, 52, 115, 508, 551, 592, 610, 653
BsgI	GTGCAG	1 cut(s)	24
Bsh1236I	CGCG	5 cut(s)	252, 258, 315, 347, 750
Bsh1285I	CGRYCG	1 cut(s)	319
BshFI	GGCC	1 cut(s)	275
BsiEI	CGRYCG	1 cut(s)	319
BsiHKAI	GWGCWC	1 cut(s)	270
BsiSI	CCGG	1 cut(s)	372
BslFI	GGGAC	1 cut(s)	431
BslI	CCNNNNNNNGG	1 cut(s)	232
BsmAI	GTCTC	3 cut(s)	156, 241, 500
BsmFI	GGGAC	1 cut(s)	431
BsnI	GGCC	1 cut(s)	275
Bso31I	GGTCTC	1 cut(s)	241
Bsp119I	TTCGAA	2 cut(s)	473, 731
Bsp1286I	GDGCHC	1 cut(s)	270
Bsp143I	GATC	1 cut(s)	396
Bsp1720I	GCTNAGC	1 cut(s)	350
BspACI	CCGC	8 cut(s)	156, 250, 256, 313, 319, 336, 354, 375
BspANI	GGCC	1 cut(s)	275
BspCNI	CTCAG	1 cut(s)	363
BspFNI	CGCG	5 cut(s)	252, 258, 315, 347, 750
BspPI	GGATC	1 cut(s)	404
BspT104I	TTCGAA	2 cut(s)	473, 731
BspTNI	GGTCTC	1 cut(s)	241
BsrFI	RCCGGY	1 cut(s)	371
BsrI	ACTGG	1 cut(s)	275
BssAI	RCCGGY	1 cut(s)	371
BssECI	CCNNGG	1 cut(s)	491
BssMI	GATC	1 cut(s)	396
BssNI	GRCGYC	1 cut(s)	303
BssSI	CACGAG	1 cut(s)	159
Bst2BI	CACGAG	1 cut(s)	159
Bst2UI	CCWGG	2 cut(s)	290, 744
Bst6I	CTCTTC	3 cut(s)	26, 494, 569
BstACI	GRCGYC	1 cut(s)	303
BstBI	TTCGAA	2 cut(s)	473, 731
BstC8I	GCNNGC	3 cut(s)	256, 282, 373
BstDEI	CTNAG	2 cut(s)	296, 350
BstF5I	GGATG	3 cut(s)	606, 612, 723
BstFNI	CGCG	5 cut(s)	252, 258, 315, 347, 750
BstHHI	GCGC	2 cut(s)	254, 349
BstKTI	GATC	1 cut(s)	399
BstMAI	GTCTC	3 cut(s)	156, 241, 500
BstMBI	GATC	1 cut(s)	396
BstMCI	CGRYCG	1 cut(s)	319
BstMWI	GCNNNNNNNGC	3 cut(s)	281, 344, 372
BstNI	CCWGG	2 cut(s)	290, 744
BstPAI	GACNNNNGTC	1 cut(s)	751
BstSCI	CCNGG	2 cut(s)	288, 742
BstUI	CGCG	5 cut(s)	252, 258, 315, 347, 750
BsuRI	GGCC	1 cut(s)	275
BtsCI	GGATG	3 cut(s)	606, 612, 723
BtsI	GCAGTG	1 cut(s)	36
BtsIMutI	CAGTG	2 cut(s)	36, 268
Cac8I	GCNNGC	3 cut(s)	256, 282, 373
CfoI	GCGC	2 cut(s)	254, 349
Cfr10I	RCCGGY	1 cut(s)	371
Cfr13I	GGNCC	2 cut(s)	273, 292
CseI	GACGC	2 cut(s)	311, 756
CsiI	ACCWGGT	1 cut(s)	288
Csp6I	GTAC	1 cut(s)	468
CviJI	RGCY	6 cut(s)	275, 280, 388, 438, 460, 770
CviKI_1	RGCY	6 cut(s)	275, 280, 388, 438, 460, 770
CviQI	GTAC	1 cut(s)	468
DdeI	CTNAG	2 cut(s)	296, 350
DpnI	GATC	1 cut(s)	398
DpnII	GATC	1 cut(s)	396
Eam1104I	CTCTTC	3 cut(s)	26, 494, 569
EarI	CTCTTC	3 cut(s)	26, 494, 569
EciI	GGCGGA	2 cut(s)	325, 390
Eco31I	GGTCTC	1 cut(s)	241
Eco47I	GGWCC	1 cut(s)	292
Eco57I	CTGAAG	1 cut(s)	531
EcoO109I	RGGNCCY	1 cut(s)	292
EcoRI	GAATTC	1 cut(s)	486
EcoRII	CCWGG	2 cut(s)	288, 742
FaiI	YATR	2 cut(s)	173, 774
FaqI	GGGAC	1 cut(s)	431
FauI	CCCGC	2 cut(s)	163, 263
FokI	GGATG	3 cut(s)	613, 619, 730
FspBI	CTAG	1 cut(s)	687
GlaI	GCGC	2 cut(s)	253, 348
GsuI	CTGGAG	1 cut(s)	460
HaeIII	GGCC	1 cut(s)	275
HapII	CCGG	1 cut(s)	372
HgaI	GACGC	2 cut(s)	311, 756
HhaI	GCGC	2 cut(s)	254, 349
Hin1I	GRCGYC	1 cut(s)	303
Hin6I	GCGC	2 cut(s)	252, 347
HinP1I	GCGC	2 cut(s)	252, 347
HindIII	AAGCTT	1 cut(s)	768
HinfI	GANTC	3 cut(s)	168, 332, 752
HpaII	CCGG	1 cut(s)	372
HphI	GGTGA	1 cut(s)	569
Hpy166II	GTNNAC	2 cut(s)	310, 451
Hpy188I	TCNGA	2 cut(s)	385, 492
Hpy8I	GTNNAC	2 cut(s)	310, 451
Hpy99I	CGWCG	1 cut(s)	305
HpyAV	CCTTC	9 cut(s)	54, 109, 139, 145, 225, 614, 628, 637, 774
HpyCH4V	TGCA	3 cut(s)	41, 518, 610
HpyF10VI	GCNNNNNNNGC	3 cut(s)	281, 344, 372
HpyF3I	CTNAG	2 cut(s)	296, 350
Hsp92I	GRCGYC	1 cut(s)	303
HspAI	GCGC	2 cut(s)	252, 347
KroI	GCCGGC	1 cut(s)	371
KroNI	GCCGGC	1 cut(s)	373
Kzo9I	GATC	1 cut(s)	396
LmnI	GCTCC	3 cut(s)	101, 145, 385
LweI	GCATC	2 cut(s)	330, 597
MabI	ACCWGGT	1 cut(s)	288
MaeI	CTAG	1 cut(s)	687
MaeIII	GTNAC	1 cut(s)	356
MalI	GATC	1 cut(s)	398
MboI	GATC	1 cut(s)	396
MboII	GAAGA	5 cut(s)	13, 511, 559, 586, 719
MhlI	GDGCHC	1 cut(s)	270
MluCI	AATT	3 cut(s)	486, 712, 727
MlyI	GAGTC	3 cut(s)	177, 341, 761
MmeI	TCCRAC	1 cut(s)	652
MreI	CGCCGGCG	1 cut(s)	371
MroNI	GCCGGC	1 cut(s)	371
MspA1I	CMGCKG	1 cut(s)	354
MspI	CCGG	1 cut(s)	372
MspR9I	CCNGG	2 cut(s)	290, 744
MvaI	CCWGG	2 cut(s)	290, 744
MvnI	CGCG	5 cut(s)	252, 258, 315, 347, 750
MwoI	GCNNNNNNNGC	3 cut(s)	281, 344, 372
NaeI	GCCGGC	1 cut(s)	373
NdeII	GATC	1 cut(s)	396
NgoMIV	GCCGGC	1 cut(s)	371
NmeAIII	GCCGAG	1 cut(s)	364
NspV	TTCGAA	2 cut(s)	473, 731
PdiI	GCCGGC	1 cut(s)	373
PflFI	GACNNNGTC	2 cut(s)	167, 290
PfoI	TCCNGGA	1 cut(s)	742
PleI	GAGTC	3 cut(s)	176, 340, 760
PpsI	GAGTC	3 cut(s)	176, 340, 760
PpuMI	RGGWCCY	1 cut(s)	292
PshAI	GACNNNNGTC	1 cut(s)	751
Psp5II	RGGWCCY	1 cut(s)	292
Psp6I	CCWGG	2 cut(s)	288, 742
PspGI	CCWGG	2 cut(s)	288, 742
PspPI	GGNCC	2 cut(s)	273, 292
PspPPI	RGGWCCY	1 cut(s)	292
PsyI	GACNNNGTC	2 cut(s)	167, 290
RsaI	GTAC	1 cut(s)	469
RsaNI	GTAC	1 cut(s)	468
Sau3AI	GATC	1 cut(s)	396
Sau96I	GGNCC	2 cut(s)	273, 292
SchI	GAGTC	3 cut(s)	177, 341, 761
ScrFI	CCNGG	2 cut(s)	290, 744
SduI	GDGCHC	1 cut(s)	270
SexAI	ACCWGGT	1 cut(s)	288
SfaNI	GCATC	2 cut(s)	330, 597
SfuI	TTCGAA	2 cut(s)	473, 731
SgrAI	CRCCGGYG	1 cut(s)	371
SinI	GGWCC	1 cut(s)	292
Sse9I	AATT	3 cut(s)	486, 712, 727
SsiI	CCGC	8 cut(s)	156, 250, 256, 313, 319, 336, 354, 375
SspMI	CTAG	1 cut(s)	687
StyD4I	CCNGG	2 cut(s)	288, 742
TaqI	TCGA	5 cut(s)	264, 324, 456, 473, 731
TasI	AATT	3 cut(s)	486, 712, 727
TscAI	CASTG	2 cut(s)	43, 275
TspDTI	ATGAA	1 cut(s)	720
TspRI	CASTG	2 cut(s)	43, 275
Tth111I	GACNNNGTC	2 cut(s)	167, 290
VpaK11BI	GGWCC	1 cut(s)	292
XapI	RAATTY	1 cut(s)	486
XspI	CTAG	1 cut(s)	687

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.