Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0004624

Physical Location & Seq

Genomic Coordinates Forward (+)

13535856 .. 13539116

Gene Structure 3261 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1165400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGTGCAGAACCCTAATGACAGATAACAATCAAAATGACAGTTTAATGTCAGTTGGTAGTTCGTTCGGAAAGCTTCCTGATCATCTGCTAATAGAAATTTTTATCCGAGTTCCTGTCTCAGAGTGGGCACAAATCTCCTGTGTTAAAAAGCAGTGGGCCAATTTGTTTCGCGGAGAATTCTTGTGGCAAGCTGCTCTTGCTATGACATTTCCTTTGGCTAGCCGAGCTAAAAGGTGGCCAGGACCTATCCCTCGAGGATTGAGCAAGAGGAGATTTGAAGCTTTATATGTCAGTAAACATATTTTTGCTCTAGATGGTGAGATTGATGAGATCGTGGGCCATAGTTATTTGTTTCTAAAAGAGCAGCTTGAGCGTTCAACCATGCCACCCTCTTCCAGTATACTGCACGGAACCCTCATAGATCAGTTTATTGCTTGTGGGAAATCGAGAGACATGGCTCATGATCTTGCTTCCCAGATCTGGCTGGCTGTTCTTGACAATTTAGAGGAAAACGAGCAAACTTTTCAATTACTTAAACGTCTTGCACAAGAAGCCGATGTTTTTCTTCCGTACCCGTACTCAAGATCGATCAAAGTCCAATGGAGGGTGTTTGAAAAACTCTTCACAGATTTTCGCGACTGCTTCAATCATGTAGATTACTATGATGTGTTGGCTTGTGCGAAGAACAAGTTTCAGCCAATACCATCGACTTGGTTAGGTTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

242

Amino Acids

27.89

Weight (kDa)

7.0

Isoelectric Point (pI)

50.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004624)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20270 AT3G20270 AT3G20270 AT3G20270 AT3G20270 AT3G20270
fragaria_vesca	FvH4_6g36931 FvH4_6g36931 FvH4_6g36931
malus_domestica	MD09G1165400.v1.1 MD17G1162300.v1.1
prunus_persica	Prupe.3G023100_v2.0.a1
pyrus_communis	pycom09g08280
rosa_chinensis	RchiOBHm_Chr2g0149371 RchiOBHm_Chr2g0149381
rosa_laevigata	RLG00000020396 RLG00000020402
rosa_multiflora	Rmu_co8329327.1_g000001 Rmu_sc0000873.1_g000018 Rmu_sc0006867.1_g000001
rosa_roxburghii	Rroxscaffold_2G00098150 Rroxscaffold_2G00098160
rosa_rugosa	Rorug02G0411900
rosa_samantha	Rh2AG471600 Rh2AG471700 Rh2BG483900 Rh2CG457600 Rh2CG457700 Rh2DG492900 Rh2DG493000
rosa_wichuraiana	Rw2G038380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	252
AccI	GTMKAC	1 cut(s)	400
AccII	CGCG	2 cut(s)	171, 636
AciI	CCGC	1 cut(s)	171
AcoI	YGGCCR	1 cut(s)	236
AcsI	RAATTY	2 cut(s)	96, 176
AfaI	GTAC	2 cut(s)	572, 578
AfiI	CCNNNNNNNGG	2 cut(s)	480, 604
AgsI	TTSAA	5 cut(s)	278, 378, 527, 614, 646
AjnI	CCWGG	1 cut(s)	238
AluBI	AGCT	5 cut(s)	73, 191, 227, 281, 367
AluI	AGCT	5 cut(s)	73, 191, 227, 281, 367
Alw26I	GTCTC	2 cut(s)	121, 444
Ama87I	CYCGRG	1 cut(s)	252
AoxI	GGCC	3 cut(s)	156, 236, 337
ApeKI	GCWGC	2 cut(s)	191, 364
ApoI	RAATTY	2 cut(s)	96, 176
ArsI	GACNNNNNNTTYG	2 cut(s)	196, 228
AspS9I	GGNCC	3 cut(s)	156, 242, 337
AsuHPI	GGTGA	1 cut(s)	329
AsuNHI	GCTAGC	1 cut(s)	218
AvaI	CYCGRG	1 cut(s)	252
AvaII	GGWCC	1 cut(s)	242
BaeGI	GKGCMC	1 cut(s)	130
BalI	TGGCCA	1 cut(s)	238
BbvI	GCAGC	2 cut(s)	178, 376
BccI	CCATC	2 cut(s)	308, 712
BciT130I	CCWGG	1 cut(s)	240
BclI	TGATCA	1 cut(s)	79
BcoDI	GTCTC	2 cut(s)	121, 444
BfaI	CTAG	2 cut(s)	219, 311
BglII	AGATCT	1 cut(s)	477
BisI	GCNGC	2 cut(s)	192, 365
BlsI	GCNGC	2 cut(s)	193, 366
Bme1390I	CCNGG	1 cut(s)	240
Bme18I	GGWCC	1 cut(s)	242
BmeT110I	CYCGRG	1 cut(s)	252
BmgT120I	GGNCC	3 cut(s)	156, 242, 337
BmiI	GGNNCC	1 cut(s)	412
BmrFI	CCNGG	1 cut(s)	240
BmtI	GCTAGC	1 cut(s)	222
BpuEI	CTTGAG	2 cut(s)	389, 565
Bsa29I	ATCGAT	1 cut(s)	587
BsaBI	GATNNNNATC	1 cut(s)	27
Bsc4I	CCNNNNNNNGG	2 cut(s)	480, 604
Bse1I	ACTGG	1 cut(s)	396
Bse8I	GATNNNNATC	1 cut(s)	27
BseBI	CCWGG	1 cut(s)	240
BseCI	ATCGAT	1 cut(s)	587
BseJI	GATNNNNATC	1 cut(s)	27
BseLI	CCNNNNNNNGG	2 cut(s)	480, 604
BseMII	CTCAG	1 cut(s)	132
BseNI	ACTGG	1 cut(s)	396
BseRI	GAGGAG	1 cut(s)	283
BseSI	GKGCMC	1 cut(s)	130
BseXI	GCAGC	2 cut(s)	178, 376
BsgI	GTGCAG	2 cut(s)	25, 389
Bsh1236I	CGCG	2 cut(s)	171, 636
BshFI	GGCC	3 cut(s)	158, 238, 339
BshVI	ATCGAT	1 cut(s)	587
BsiHKCI	CYCGRG	1 cut(s)	252
BslI	CCNNNNNNNGG	2 cut(s)	480, 604
BsmAI	GTCTC	2 cut(s)	121, 444
BsnI	GGCC	3 cut(s)	158, 238, 339
BsoBI	CYCGRG	1 cut(s)	252
Bsp1286I	GDGCHC	1 cut(s)	130
Bsp143I	GATC	7 cut(s)	79, 330, 421, 463, 477, 584, 588
Bsp68I	TCGCGA	1 cut(s)	636
BspACI	CCGC	1 cut(s)	171
BspANI	GGCC	3 cut(s)	158, 238, 339
BspCNI	CTCAG	1 cut(s)	131
BspDI	ATCGAT	1 cut(s)	587
BspFNI	CGCG	2 cut(s)	171, 636
BspHI	TCATGA	1 cut(s)	460
BspLI	GGNNCC	1 cut(s)	412
BspOI	GCTAGC	1 cut(s)	222
BsrI	ACTGG	1 cut(s)	396
BssMI	GATC	7 cut(s)	79, 330, 421, 463, 477, 584, 588
BssNAI	GTATAC	1 cut(s)	401
Bst1107I	GTATAC	1 cut(s)	401
Bst2UI	CCWGG	1 cut(s)	240
Bst4CI	ACNGT	1 cut(s)	41
Bst6I	CTCTTC	2 cut(s)	397, 626
BstC8I	GCNNGC	3 cut(s)	189, 220, 486
BstDEI	CTNAG	1 cut(s)	118
BstFNI	CGCG	2 cut(s)	171, 636
BstKTI	GATC	7 cut(s)	82, 333, 424, 466, 480, 587, 591
BstMAI	GTCTC	2 cut(s)	121, 444
BstMBI	GATC	7 cut(s)	79, 330, 421, 463, 477, 584, 588
BstMWI	GCNNNNNNNGC	4 cut(s)	197, 224, 370, 551
BstNI	CCWGG	1 cut(s)	240
BstSCI	CCNGG	1 cut(s)	238
BstSLI	GKGCMC	1 cut(s)	130
BstUI	CGCG	2 cut(s)	171, 636
BstV1I	GCAGC	2 cut(s)	178, 376
BstX2I	RGATCY	1 cut(s)	477
BstXI	CCANNNNNNTGG	1 cut(s)	711
BstYI	RGATCY	1 cut(s)	477
BstZ17I	GTATAC	1 cut(s)	401
Bsu15I	ATCGAT	1 cut(s)	587
BsuRI	GGCC	3 cut(s)	158, 238, 339
BsuTUI	ATCGAT	1 cut(s)	587
BtsI	GCAGTG	1 cut(s)	158
BtsIMutI	CAGTG	1 cut(s)	158
BtuMI	TCGCGA	1 cut(s)	636
Cac8I	GCNNGC	3 cut(s)	189, 220, 486
CciI	TCATGA	1 cut(s)	460
Cfr13I	GGNCC	3 cut(s)	156, 242, 337
ClaI	ATCGAT	1 cut(s)	587
Csp6I	GTAC	2 cut(s)	571, 577
CviAII	CATG	4 cut(s)	382, 454, 461, 650
CviQI	GTAC	2 cut(s)	571, 577
DdeI	CTNAG	1 cut(s)	118
DpnI	GATC	7 cut(s)	81, 332, 423, 465, 479, 586, 590
DpnII	GATC	7 cut(s)	79, 330, 421, 463, 477, 584, 588
EaeI	YGGCCR	1 cut(s)	236
Eam1104I	CTCTTC	2 cut(s)	397, 626
EarI	CTCTTC	2 cut(s)	397, 626
Eco47I	GGWCC	1 cut(s)	242
Eco88I	CYCGRG	1 cut(s)	252
EcoO109I	RGGNCCY	1 cut(s)	242
EcoRI	GAATTC	1 cut(s)	176
EcoRII	CCWGG	1 cut(s)	238
FaeI	CATG	4 cut(s)	385, 457, 464, 653
FalI	AAGNNNNNCTT	4 cut(s)	180, 212, 351, 383
FatI	CATG	4 cut(s)	381, 453, 460, 649
FbaI	TGATCA	1 cut(s)	79
FblI	GTMKAC	1 cut(s)	400
Fnu4HI	GCNGC	2 cut(s)	192, 365
Fsp4HI	GCNGC	2 cut(s)	192, 365
FspBI	CTAG	2 cut(s)	219, 311
GluI	GCNGC	2 cut(s)	192, 365
HaeIII	GGCC	3 cut(s)	158, 238, 339
Hin1II	CATG	4 cut(s)	385, 457, 464, 653
HindIII	AAGCTT	2 cut(s)	71, 279
HphI	GGTGA	1 cut(s)	329
Hpy166II	GTNNAC	2 cut(s)	296, 401
Hpy188I	TCNGA	3 cut(s)	68, 107, 121
Hpy188III	TCNNGA	7 cut(s)	77, 311, 447, 461, 494, 582, 635
Hpy8I	GTNNAC	2 cut(s)	296, 401
HpyCH4III	ACNGT	1 cut(s)	41
HpyCH4IV	ACGT	1 cut(s)	538
HpyCH4V	TGCA	3 cut(s)	6, 406, 545
HpyF10VI	GCNNNNNNNGC	4 cut(s)	197, 224, 370, 551
HpyF3I	CTNAG	1 cut(s)	118
HpySE526I	ACGT	1 cut(s)	538
Hsp92II	CATG	4 cut(s)	385, 457, 464, 653
Ksp22I	TGATCA	1 cut(s)	79
Kzo9I	GATC	7 cut(s)	79, 330, 421, 463, 477, 584, 588
LpnPI	CCDG	9 cut(s)	90, 126, 151, 225, 252, 409, 466, 470, 488
Lsp1109I	GCAGC	2 cut(s)	178, 376
MaeI	CTAG	2 cut(s)	219, 311
MaeII	ACGT	1 cut(s)	538
MaeIII	GTNAC	1 cut(s)	719
MalI	GATC	7 cut(s)	81, 332, 423, 465, 479, 586, 590
MboI	GATC	7 cut(s)	79, 330, 421, 463, 477, 584, 588
MboII	GAAGA	4 cut(s)	384, 557, 613, 694
MflI	RGATCY	1 cut(s)	477
MhlI	GDGCHC	1 cut(s)	130
MlsI	TGGCCA	1 cut(s)	238
MluCI	AATT	5 cut(s)	96, 160, 176, 499, 527
MluNI	TGGCCA	1 cut(s)	238
MnlI	CCTC	7 cut(s)	248, 261, 261, 400, 425, 499, 597
Mox20I	TGGCCA	1 cut(s)	238
MscI	TGGCCA	1 cut(s)	238
MseI	TTAA	3 cut(s)	44, 144, 534
Msp20I	TGGCCA	1 cut(s)	238
MspR9I	CCNGG	1 cut(s)	240
MvaI	CCWGG	1 cut(s)	240
MvnI	CGCG	2 cut(s)	171, 636
MwoI	GCNNNNNNNGC	4 cut(s)	197, 224, 370, 551
NdeII	GATC	7 cut(s)	79, 330, 421, 463, 477, 584, 588
NheI	GCTAGC	1 cut(s)	218
NlaIII	CATG	4 cut(s)	385, 457, 464, 653
NlaIV	GGNNCC	1 cut(s)	412
NmeAIII	GCCGAG	1 cut(s)	248
NruI	TCGCGA	1 cut(s)	636
PaeR7I	CTCGAG	1 cut(s)	252
PagI	TCATGA	1 cut(s)	460
PkrI	GCNGC	2 cut(s)	193, 366
PpuMI	RGGWCCY	1 cut(s)	242
Psp5II	RGGWCCY	1 cut(s)	242
Psp6I	CCWGG	1 cut(s)	238
PspGI	CCWGG	1 cut(s)	238
PspN4I	GGNNCC	1 cut(s)	412
PspPI	GGNCC	3 cut(s)	156, 242, 337
PspPPI	RGGWCCY	1 cut(s)	242
PspXI	VCTCGAGB	1 cut(s)	252
PsuI	RGATCY	1 cut(s)	477
RruI	TCGCGA	1 cut(s)	636
RsaI	GTAC	2 cut(s)	572, 578
RsaNI	GTAC	2 cut(s)	571, 577
SaqAI	TTAA	3 cut(s)	44, 144, 534
SatI	GCNGC	2 cut(s)	192, 365
Sau3AI	GATC	7 cut(s)	79, 330, 421, 463, 477, 584, 588
Sau96I	GGNCC	3 cut(s)	156, 242, 337
ScrFI	CCNGG	1 cut(s)	240
SduI	GDGCHC	1 cut(s)	130
SetI	ASST	9 cut(s)	75, 193, 229, 236, 247, 283, 369, 541, 721
Sfr274I	CTCGAG	1 cut(s)	252
SinI	GGWCC	1 cut(s)	242
SlaI	CTCGAG	1 cut(s)	252
SmlI	CTYRAG	3 cut(s)	252, 368, 580
SmoI	CTYRAG	3 cut(s)	252, 368, 580
Sse9I	AATT	5 cut(s)	96, 160, 176, 499, 527
SsiI	CCGC	1 cut(s)	171
SspMI	CTAG	2 cut(s)	219, 311
StyD4I	CCNGG	1 cut(s)	238
TaaI	ACNGT	1 cut(s)	41
TaiI	ACGT	1 cut(s)	541
TaqI	TCGA	4 cut(s)	253, 446, 587, 707
TasI	AATT	5 cut(s)	96, 160, 176, 499, 527
Tru1I	TTAA	3 cut(s)	44, 144, 534
Tru9I	TTAA	3 cut(s)	44, 144, 534
TscAI	CASTG	1 cut(s)	158
TseI	GCWGC	2 cut(s)	191, 364
TspGWI	ACGGA	2 cut(s)	423, 558
TspRI	CASTG	1 cut(s)	158
VpaK11BI	GGWCC	1 cut(s)	242
XapI	RAATTY	2 cut(s)	96, 176
XbaI	TCTAGA	1 cut(s)	310
XhoI	CTCGAG	1 cut(s)	252
XmiI	GTMKAC	1 cut(s)	400
XspI	CTAG	2 cut(s)	219, 311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.