Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0004624

Physical Location & Seq

Genomic Coordinates Reverse (-)

68423146 .. 68427696

Gene Structure 4551 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG483900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1263 bp

ATGCTTGGCACACTCCCTTCCACCTACCTCAAATGGGTCTCCACCAACCTCCGCGCCCGCGACTTCGAGCACTGGGCCAAGCTCGCCGACCAGGTCCTAAGCGACGCCGTTTACCGCGACCGCATCGAGTGGGAGTCCGCCGAGAACGCGCTCAGCGGTAACAGAAGCAACGCCGGCGGAGTTTCGGAGCTTCTGGGGATCAGCGACAGGTTCGGGTGGGACAACGATGACAAAGTTGGCTGGAGTAAAGTGAACTTCGAGCTTTTGGGTACTTCGAAAGGTGGGAGAATTCCGAGGAGGAAGAGTGAGACTGAAGTTGCAGAACAGAGTGGTTTGGAGGAGAGAGAGAAGAAGCAGGGTGAGGGTTTAGGGGAGAAGAGGAGGGAAAGGAGGGAGAGGAGGATGAGGATGCAGAGAGTGGAAGGTGGGGTTGGGAAGGAGGAGAAGGTTGGGGGTAGTTTAGGGAATGGAGTTGGATTAGGGAGGACTAGCAAGGAGAATGGTAATGAAGATAATTGGATGCTCATTCTTCCTTTCTCTATCAGAACGCTAATGACAAATAATAAAGAAAATGACACCTTAACATCAGGTGACAGTTCATTTGGAAAGCTTCCTGATCATCTCCTAATAGAGATCTTCATCCGGGTTCCCGTATCTGAATGGGTACGGATATGCTGTGTAAGAAAACAGTGGGCCAATCTTTTTCGTGGAGAATGCTTGTGGCGAGCTGCTCTATCTACGACATTTCCTTTGGCTAGCAAAGCTAAAAGTTGGCCTGGACCTATCCCTCGAGGTTTGAGCAAGAGGAGATTTGCTGCTTTATATGTTAGTGAGCACATCTTTGCTCTAGATGGTGAGATTGATGAGATAGTGGGGCATACTTATTTGTTTCTAAAAGAGCAGCTTGAGCTTTCATCTATGCCTCCACCATCTGGTATTTTGCACGGTACCATAATAGATCAGTTTATTGCTTGTGGTAAATCAAGAGACATGGCTCACGAGCTTGCTTCCCAGATATGGTTGGCTGTTCTTGACAATTTAGAGGAAACCGAACACACTTTTCAAATACTTAAACGTCTCGCACAAGAGGGGGATGTTTTTCTTCCATACCCGTACTCAAGATCAATCAAAGTCCAATGGAAGGTGTTTGAAAAGCTTTTCACTGATTTTCGTGACTGCCTCAACCATGTGGATTACTATGATGTCTTGGCTAGTGCAAAGAACAAGTTTCAGCCAATACCATCTACTTGGTTAGGTCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

QSregVF_b

Protein Analysis

420

Amino Acids

47.73

Weight (kDa)

7.13

Isoelectric Point (pI)

40.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004624)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20270 AT3G20270 AT3G20270 AT3G20270 AT3G20270 AT3G20270
fragaria_vesca	FvH4_6g36931 FvH4_6g36931 FvH4_6g36931
malus_domestica	MD09G1165400.v1.1 MD17G1162300.v1.1
prunus_persica	Prupe.3G023100_v2.0.a1
pyrus_communis	pycom09g08280
rosa_chinensis	RchiOBHm_Chr2g0149371 RchiOBHm_Chr2g0149381
rosa_laevigata	RLG00000020396 RLG00000020402
rosa_multiflora	Rmu_co8329327.1_g000001 Rmu_sc0000873.1_g000018 Rmu_sc0006867.1_g000001
rosa_roxburghii	Rroxscaffold_2G00098150 Rroxscaffold_2G00098160
rosa_rugosa	Rorug02G0411900
rosa_samantha	Rh2AG471600 Rh2AG471700 Rh2BG483900 Rh2CG457600 Rh2CG457700 Rh2DG492900 Rh2DG493000
rosa_wichuraiana	Rw2G038380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	789
Acc65I	GGTACC	1 cut(s)	947
AccB1I	GGYRCC	1 cut(s)	947
AccB7I	CCANNNNNTGG	1 cut(s)	932
AccII	CGCG	4 cut(s)	54, 60, 117, 149
AciI	CCGC	7 cut(s)	52, 58, 115, 121, 138, 156, 177
AclWI	GGATC	1 cut(s)	206
AcsI	RAATTY	1 cut(s)	288
AcuI	CTGAAG	1 cut(s)	333
AcyI	GRCGYC	1 cut(s)	105
AfaI	GTAC	4 cut(s)	271, 666, 949, 1115
AfiI	CCNNNNNNNGG	4 cut(s)	34, 932, 1017, 1141
AgsI	TTSAA	2 cut(s)	1064, 1151
AjnI	CCWGG	2 cut(s)	90, 775
AjuI	GAANNNNNNNTTGG	2 cut(s)	414, 446
Alw21I	GWGCWC	2 cut(s)	72, 837
Alw26I	GTCTC	4 cut(s)	43, 302, 981, 1082
AlwI	GGATC	1 cut(s)	206
Ama87I	CYCGRG	1 cut(s)	789
AoxI	GGCC	3 cut(s)	75, 693, 773
ApeKI	GCWGC	3 cut(s)	728, 815, 901
ApoI	RAATTY	1 cut(s)	288
ArsI	GACNNNNNNTTYG	4 cut(s)	584, 616, 733, 765
Asp718I	GGTACC	1 cut(s)	947
AspLEI	GCGC	2 cut(s)	56, 151
AspS9I	GGNCC	4 cut(s)	75, 94, 693, 779
AsuC2I	CCSGG	1 cut(s)	644
AsuHPI	GGTGA	3 cut(s)	371, 602, 866
AsuII	TTCGAA	1 cut(s)	275
AsuNHI	GCTAGC	1 cut(s)	755
AvaI	CYCGRG	1 cut(s)	789
AvaII	GGWCC	2 cut(s)	94, 779
BanI	GGYRCC	1 cut(s)	947
BauI	CACGAG	1 cut(s)	998
Bbv12I	GWGCWC	2 cut(s)	72, 837
BbvI	GCAGC	3 cut(s)	715, 802, 913
BccI	CCATC	3 cut(s)	845, 937, 1249
BceAI	ACGGC	1 cut(s)	92
BciT130I	CCWGG	2 cut(s)	92, 777
BclI	TGATCA	1 cut(s)	616
BcnI	CCSGG	1 cut(s)	644
BcoDI	GTCTC	4 cut(s)	43, 302, 981, 1082
BfaI	CTAG	4 cut(s)	489, 756, 848, 1212
BglII	AGATCT	1 cut(s)	633
BisI	GCNGC	3 cut(s)	729, 816, 902
BlpI	GCTNAGC	1 cut(s)	152
BlsI	GCNGC	3 cut(s)	730, 817, 903
Bme1390I	CCNGG	3 cut(s)	92, 644, 777
Bme18I	GGWCC	2 cut(s)	94, 779
BmeT110I	CYCGRG	1 cut(s)	789
BmgT120I	GGNCC	4 cut(s)	75, 94, 693, 779
BmiI	GGNNCC	2 cut(s)	648, 949
BmrFI	CCNGG	3 cut(s)	92, 644, 777
BmrI	ACTGGG	1 cut(s)	82
BmsI	GCATC	3 cut(s)	132, 399, 510
BmtI	GCTAGC	1 cut(s)	759
BmuI	ACTGGG	1 cut(s)	82
BpmI	CTGGAG	1 cut(s)	262
Bpu10I	CCTNAGC	1 cut(s)	98
Bpu1102I	GCTNAGC	1 cut(s)	152
Bpu14I	TTCGAA	1 cut(s)	275
BpuEI	CTTGAG	2 cut(s)	926, 1102
BpuMI	CCSGG	1 cut(s)	644
BsaBI	GATNNNNATC	1 cut(s)	638
BsaHI	GRCGYC	1 cut(s)	105
BsaI	GGTCTC	1 cut(s)	43
BsaJI	CCNNGG	1 cut(s)	293
BsaXI	ACNNNNNCTCC	2 cut(s)	289, 319
Bsc4I	CCNNNNNNNGG	4 cut(s)	34, 932, 1017, 1141
Bse118I	RCCGGY	1 cut(s)	173
Bse1I	ACTGG	1 cut(s)	77
Bse8I	GATNNNNATC	1 cut(s)	638
BseBI	CCWGG	2 cut(s)	92, 777
BseDI	CCNNGG	1 cut(s)	293
BseGI	GGATG	5 cut(s)	408, 414, 525, 639, 1099
BseJI	GATNNNNATC	1 cut(s)	638
BseLI	CCNNNNNNNGG	4 cut(s)	34, 932, 1017, 1141
BseMII	CTCAG	1 cut(s)	166
BseNI	ACTGG	1 cut(s)	77
BseRI	GAGGAG	6 cut(s)	310, 353, 394, 412, 455, 820
BseXI	GCAGC	3 cut(s)	715, 802, 913
Bsh1236I	CGCG	4 cut(s)	54, 60, 117, 149
Bsh1285I	CGRYCG	1 cut(s)	121
BshFI	GGCC	3 cut(s)	77, 695, 775
BshNI	GGYRCC	1 cut(s)	947
BsiEI	CGRYCG	1 cut(s)	121
BsiHKAI	GWGCWC	2 cut(s)	72, 837
BsiHKCI	CYCGRG	1 cut(s)	789
BsiSI	CCGG	2 cut(s)	174, 643
BslFI	GGGAC	1 cut(s)	233
BslI	CCNNNNNNNGG	4 cut(s)	34, 932, 1017, 1141
BsmAI	GTCTC	4 cut(s)	43, 302, 981, 1082
BsmBI	CGTCTC	1 cut(s)	1082
BsmFI	GGGAC	1 cut(s)	233
BsmI	GAATGC	1 cut(s)	719
BsnI	GGCC	3 cut(s)	77, 695, 775
Bso31I	GGTCTC	1 cut(s)	43
BsoBI	CYCGRG	1 cut(s)	789
Bsp119I	TTCGAA	1 cut(s)	275
Bsp1286I	GDGCHC	2 cut(s)	72, 837
Bsp143I	GATC	5 cut(s)	198, 616, 633, 958, 1121
Bsp1720I	GCTNAGC	1 cut(s)	152
BspACI	CCGC	7 cut(s)	52, 58, 115, 121, 138, 156, 177
BspANI	GGCC	3 cut(s)	77, 695, 775
BspCNI	CTCAG	1 cut(s)	165
BspFNI	CGCG	4 cut(s)	54, 60, 117, 149
BspLI	GGNNCC	2 cut(s)	648, 949
BspOI	GCTAGC	1 cut(s)	759
BspPI	GGATC	1 cut(s)	206
BspT104I	TTCGAA	1 cut(s)	275
BspT107I	GGYRCC	1 cut(s)	947
BspTNI	GGTCTC	1 cut(s)	43
BsrFI	RCCGGY	1 cut(s)	173
BsrI	ACTGG	1 cut(s)	77
BssAI	RCCGGY	1 cut(s)	173
BssECI	CCNNGG	1 cut(s)	293
BssMI	GATC	5 cut(s)	198, 616, 633, 958, 1121
BssNI	GRCGYC	1 cut(s)	105
BssSI	CACGAG	1 cut(s)	998
Bst2BI	CACGAG	1 cut(s)	998
Bst2UI	CCWGG	2 cut(s)	92, 777
Bst4CI	ACNGT	3 cut(s)	596, 690, 947
Bst6I	CTCTTC	2 cut(s)	296, 371
BstACI	GRCGYC	1 cut(s)	105
BstBI	TTCGAA	1 cut(s)	275
BstC8I	GCNNGC	6 cut(s)	58, 84, 175, 726, 757, 1005
BstDEI	CTNAG	2 cut(s)	98, 152
BstF5I	GGATG	5 cut(s)	408, 414, 525, 639, 1099
BstFNI	CGCG	4 cut(s)	54, 60, 117, 149
BstHHI	GCGC	2 cut(s)	56, 151
BstKTI	GATC	5 cut(s)	201, 619, 636, 961, 1124
BstMAI	GTCTC	4 cut(s)	43, 302, 981, 1082
BstMBI	GATC	5 cut(s)	198, 616, 633, 958, 1121
BstMCI	CGRYCG	1 cut(s)	121
BstMWI	GCNNNNNNNGC	5 cut(s)	83, 146, 174, 761, 907
BstNI	CCWGG	2 cut(s)	92, 777
BstSCI	CCNGG	3 cut(s)	90, 642, 775
BstUI	CGCG	4 cut(s)	54, 60, 117, 149
BstV1I	GCAGC	3 cut(s)	715, 802, 913
BstX2I	RGATCY	1 cut(s)	633
BstXI	CCANNNNNNTGG	1 cut(s)	1248
BstYI	RGATCY	1 cut(s)	633
BsuRI	GGCC	3 cut(s)	77, 695, 775
BtsCI	GGATG	5 cut(s)	408, 414, 525, 639, 1099
BtsIMutI	CAGTG	3 cut(s)	70, 695, 1161
Cac8I	GCNNGC	6 cut(s)	58, 84, 175, 726, 757, 1005
CfoI	GCGC	2 cut(s)	56, 151
Cfr10I	RCCGGY	1 cut(s)	173
Cfr13I	GGNCC	4 cut(s)	75, 94, 693, 779
CseI	GACGC	1 cut(s)	113
CsiI	ACCWGGT	1 cut(s)	90
Csp6I	GTAC	4 cut(s)	270, 665, 948, 1114
CviAII	CATG	2 cut(s)	991, 1187
CviQI	GTAC	4 cut(s)	270, 665, 948, 1114
DdeI	CTNAG	2 cut(s)	98, 152
DpnI	GATC	5 cut(s)	200, 618, 635, 960, 1123
DpnII	GATC	5 cut(s)	198, 616, 633, 958, 1121
Eam1104I	CTCTTC	2 cut(s)	296, 371
EarI	CTCTTC	2 cut(s)	296, 371
EciI	GGCGGA	2 cut(s)	127, 192
Eco31I	GGTCTC	1 cut(s)	43
Eco47I	GGWCC	2 cut(s)	94, 779
Eco57I	CTGAAG	1 cut(s)	333
Eco88I	CYCGRG	1 cut(s)	789
EcoO109I	RGGNCCY	1 cut(s)	94
EcoRI	GAATTC	1 cut(s)	288
EcoRII	CCWGG	2 cut(s)	90, 775
Esp3I	CGTCTC	1 cut(s)	1082
FaeI	CATG	2 cut(s)	994, 1190
FalI	AAGNNNNNCTT	2 cut(s)	888, 920
FaqI	GGGAC	1 cut(s)	233
FatI	CATG	2 cut(s)	990, 1186
FauI	CCCGC	1 cut(s)	65
FbaI	TGATCA	1 cut(s)	616
Fnu4HI	GCNGC	3 cut(s)	729, 816, 902
FokI	GGATG	5 cut(s)	415, 421, 532, 626, 1106
Fsp4HI	GCNGC	3 cut(s)	729, 816, 902
FspBI	CTAG	4 cut(s)	489, 756, 848, 1212
GlaI	GCGC	2 cut(s)	55, 150
GluI	GCNGC	3 cut(s)	729, 816, 902
GsuI	CTGGAG	1 cut(s)	262
HaeIII	GGCC	3 cut(s)	77, 695, 775
HapII	CCGG	2 cut(s)	174, 643
HgaI	GACGC	1 cut(s)	113
HhaI	GCGC	2 cut(s)	56, 151
Hin1I	GRCGYC	1 cut(s)	105
Hin1II	CATG	2 cut(s)	994, 1190
Hin6I	GCGC	2 cut(s)	54, 149
HinP1I	GCGC	2 cut(s)	54, 149
HindIII	AAGCTT	2 cut(s)	608, 1154
HinfI	GANTC	1 cut(s)	134
HpaII	CCGG	2 cut(s)	174, 643
HphI	GGTGA	3 cut(s)	371, 602, 866
Hpy166II	GTNNAC	2 cut(s)	112, 253
Hpy188I	TCNGA	4 cut(s)	187, 294, 545, 658
Hpy188III	TCNNGA	7 cut(s)	614, 848, 984, 998, 1031, 1119, 1172
Hpy8I	GTNNAC	2 cut(s)	112, 253
Hpy99I	CGWCG	1 cut(s)	107
HpyAV	CCTTC	5 cut(s)	27, 416, 430, 439, 1135
HpyCH4III	ACNGT	3 cut(s)	596, 690, 947
HpyCH4IV	ACGT	1 cut(s)	1075
HpyCH4V	TGCA	4 cut(s)	320, 412, 943, 1217
HpyF10VI	GCNNNNNNNGC	5 cut(s)	83, 146, 174, 761, 907
HpyF3I	CTNAG	2 cut(s)	98, 152
HpySE526I	ACGT	1 cut(s)	1075
Hsp92I	GRCGYC	1 cut(s)	105
Hsp92II	CATG	2 cut(s)	994, 1190
HspAI	GCGC	2 cut(s)	54, 149
KpnI	GGTACC	1 cut(s)	951
KroI	GCCGGC	1 cut(s)	173
KroNI	GCCGGC	1 cut(s)	175
Ksp22I	TGATCA	1 cut(s)	616
Kzo9I	GATC	5 cut(s)	198, 616, 633, 958, 1121
LmnI	GCTCC	1 cut(s)	187
Lsp1109I	GCAGC	3 cut(s)	715, 802, 913
LweI	GCATC	3 cut(s)	132, 399, 510
MabI	ACCWGGT	1 cut(s)	90
MaeI	CTAG	4 cut(s)	489, 756, 848, 1212
MaeII	ACGT	1 cut(s)	1075
MaeIII	GTNAC	4 cut(s)	158, 590, 1172, 1256
MalI	GATC	5 cut(s)	200, 618, 635, 960, 1123
MboI	GATC	5 cut(s)	198, 616, 633, 958, 1121
MboII	GAAGA	7 cut(s)	313, 361, 388, 521, 521, 628, 1094
MflI	RGATCY	1 cut(s)	633
MhlI	GDGCHC	2 cut(s)	72, 837
MluCI	AATT	3 cut(s)	288, 514, 1036
MlyI	GAGTC	1 cut(s)	143
MmeI	TCCRAC	1 cut(s)	454
MreI	CGCCGGCG	1 cut(s)	173
MroNI	GCCGGC	1 cut(s)	173
MseI	TTAA	2 cut(s)	581, 1071
MspA1I	CMGCKG	1 cut(s)	156
MspI	CCGG	2 cut(s)	174, 643
MspR9I	CCNGG	3 cut(s)	92, 644, 777
Mva1269I	GAATGC	1 cut(s)	719
MvaI	CCWGG	2 cut(s)	92, 777
MvnI	CGCG	4 cut(s)	54, 60, 117, 149
MwoI	GCNNNNNNNGC	5 cut(s)	83, 146, 174, 761, 907
NaeI	GCCGGC	1 cut(s)	175
NciI	CCSGG	1 cut(s)	644
NdeII	GATC	5 cut(s)	198, 616, 633, 958, 1121
NgoMIV	GCCGGC	1 cut(s)	173
NheI	GCTAGC	1 cut(s)	755
NlaIII	CATG	2 cut(s)	994, 1190
NlaIV	GGNNCC	2 cut(s)	648, 949
NmeAIII	GCCGAG	1 cut(s)	166
NmuCI	GTSAC	3 cut(s)	590, 1172, 1256
NspV	TTCGAA	1 cut(s)	275
PaeR7I	CTCGAG	1 cut(s)	789
PctI	GAATGC	1 cut(s)	719
PdiI	GCCGGC	1 cut(s)	175
PflFI	GACNNNGTC	1 cut(s)	92
PflMI	CCANNNNNTGG	1 cut(s)	932
PkrI	GCNGC	3 cut(s)	730, 817, 903
PleI	GAGTC	1 cut(s)	142
PpsI	GAGTC	1 cut(s)	142
PpuMI	RGGWCCY	1 cut(s)	94
Psp5II	RGGWCCY	1 cut(s)	94
Psp6I	CCWGG	2 cut(s)	90, 775
PspGI	CCWGG	2 cut(s)	90, 775
PspN4I	GGNNCC	2 cut(s)	648, 949
PspPI	GGNCC	4 cut(s)	75, 94, 693, 779
PspPPI	RGGWCCY	1 cut(s)	94
PspXI	VCTCGAGB	1 cut(s)	789
PsuI	RGATCY	1 cut(s)	633
PsyI	GACNNNGTC	1 cut(s)	92
RsaI	GTAC	4 cut(s)	271, 666, 949, 1115
RsaNI	GTAC	4 cut(s)	270, 665, 948, 1114
SaqAI	TTAA	2 cut(s)	581, 1071
SatI	GCNGC	3 cut(s)	729, 816, 902
Sau3AI	GATC	5 cut(s)	198, 616, 633, 958, 1121
Sau96I	GGNCC	4 cut(s)	75, 94, 693, 779
SchI	GAGTC	1 cut(s)	143
ScrFI	CCNGG	3 cut(s)	92, 644, 777
SduI	GDGCHC	2 cut(s)	72, 837
SexAI	ACCWGGT	1 cut(s)	90
SfaNI	GCATC	3 cut(s)	132, 399, 510
Sfr274I	CTCGAG	1 cut(s)	789
SfuI	TTCGAA	1 cut(s)	275
SgrAI	CRCCGGYG	1 cut(s)	173
SinI	GGWCC	2 cut(s)	94, 779
SlaI	CTCGAG	1 cut(s)	789
SmlI	CTYRAG	3 cut(s)	789, 905, 1117
SmoI	CTYRAG	3 cut(s)	789, 905, 1117
Sse9I	AATT	3 cut(s)	288, 514, 1036
SsiI	CCGC	7 cut(s)	52, 58, 115, 121, 138, 156, 177
SspMI	CTAG	4 cut(s)	489, 756, 848, 1212
StyD4I	CCNGG	3 cut(s)	90, 642, 775
TaaI	ACNGT	3 cut(s)	596, 690, 947
TaiI	ACGT	1 cut(s)	1078
TaqI	TCGA	5 cut(s)	66, 126, 258, 275, 790
TasI	AATT	3 cut(s)	288, 514, 1036
Tru1I	TTAA	2 cut(s)	581, 1071
Tru9I	TTAA	2 cut(s)	581, 1071
TscAI	CASTG	3 cut(s)	77, 695, 1168
TseFI	GTSAC	3 cut(s)	590, 1172, 1256
TseI	GCWGC	3 cut(s)	728, 815, 901
Tsp45I	GTSAC	3 cut(s)	590, 1172, 1256
TspDTI	ATGAA	4 cut(s)	522, 588, 628, 903
TspGWI	ACGGA	1 cut(s)	682
TspRI	CASTG	3 cut(s)	77, 695, 1168
Tth111I	GACNNNGTC	1 cut(s)	92
Van91I	CCANNNNNTGG	1 cut(s)	932
VpaK11BI	GGWCC	2 cut(s)	94, 779
XapI	RAATTY	1 cut(s)	288
XbaI	TCTAGA	1 cut(s)	847
XhoI	CTCGAG	1 cut(s)	789
XspI	CTAG	4 cut(s)	489, 756, 848, 1212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.